3G1BA

The structure of the m53a mutant of caulobacter crescentus clps protease adaptor protein in complex with wlfvqrdske peptide
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
80
structure length
80
Chain Sequence
LYRVLILNDDYTPAEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Peptide binding protein
source organism Caulobacter vibrioides
publication title Molecular basis of substrate selection by the N-end rule adaptor protein ClpS.
pubmed doi rcsb
molecule keywords ATP-dependent Clp protease adapter protein clpS
total genus 22
structure length 80
sequence length 80
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 3g1bA00
1R6OC 3GW1A 1MBUC 3G19A 1RQUA 3O2OA 3G1BA 1RQSA 1MBVB 4YKAA 3GQ1A 3O2HA 3G3PA 1LZWA 3O1FB 4YJXA 3GQ0A 1DD4A 4YJMA 1R6QC 3O1FA 3DNJA 1CTFA 2W9RA 1DD3A 1MG9A 1MBXC 1RQVA 3O2BA 2WA9A 2WA8A
chains in the Genus database with same CATH superfamily
5M19A 2OTJW 3G1BA 1VQOW 1YJWW 1K9MX 1VQ7W 3I56W 1YITW 3O2HA 3CC2W 4YJXA 1VQQA 3GQ0A 4CJNA 1MWRA 3CCEW 1M1KX 4YJMA 1W2BV 1VQNW 3OW2V 1KC8X 1CTFA 4BL3A 1MWTA 3DLLW 3CCJW 1DD3A 1YIJW 3D3IA 3O2BA 3CCVW 5M1AA 5HL7W 4IOCW 5M18A 1RQSA 3CXCV 3ZG0A 3O1FB 5DM6W 2OTLW 5GW7A 4CPKA 3W7TA 5GAHa 3CCSW 3O1FA 3CCLW 3CCRW 2QA4W 4WFBW 3DNJA 4WF9W 3CPWV 3CC4W 1Q7YX 4DKIA 1MG9A 5JVHW 2QEXW 3W7SA 1YHQW 1Q81X 3ZG5A 4WFAW 3CC7W 3CCMW 1KD1X 1JJ2V 4U67W 2WA8A 3CF5W 4UY8Z 1BXYA 1M90X 1R6OC 3CCUW 3GW1A 2ZJPW 3O2OA 4IO9W 1NJIX 1VQ9W 3W7UA 3GQ1A 5GAGa 4BL2A 1VQ5W 1R6QC 1YI2W 1K8AX 1MWUA 4WFNW 3PIPW 1K73X 1MWSA 1VQKW 5DM7W 3CD6W 3CMEW 2ZJQW 3I55W 5JVGW 4IOAW 5CA3A 1KQSV 1Q82X 3G6EW 1YJNW 5GAEa 1S72W 1VQ6W 1MBVB 3ZFZA 3G71W 1VQPW 1VQMW 1VQ4W 1MBUC 3G19A 1RQUA 1YJ9W 4YKAA 5GADa 1N8RX 4WCEW 1VQLW 3G3PA 1LZWA 1Q86X 1DD4A 1QVGV 3W7WA 3G4SW 2ZJRW 2W9RA 3CCQW 3CMAW 1MBXC 1RQVA 3J7ZZ 3PIOW 1VQ8W 1QVFV 2WA9A 3W7XA
chains in the Genus database with same CATH topology
1R6OC 3GW1A 1MBUC 3G19A 1RQUA 3O2OA 3G1BA 1RQSA 1MBVB 4YKAA 3GQ1A 3O2HA 3G3PA 1LZWA 3O1FB 4YJXA 3GQ0A 1DD4A 4YJMA 1R6QC 3O1FA 3DNJA 1CTFA 2W9RA 1DD3A 1MG9A 1MBXC 1RQVA 3O2BA 2WA9A 2WA8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R6O C;  3GW1 A;  1MBU C;  3G19 A;  1RQU A;  3O2O A;  3G1B A;  1RQS A;  1MBV B;  4YKA A;  3GQ1 A;  3O2H A;  3G3P A;  1LZW A;  3O1F B;  4YJX A;  3GQ0 A;  1DD4 A;  4YJM A;  1R6Q C;  3O1F A;  3DNJ A;  1CTF A;  2W9R A;  1DD3 A;  1MG9 A;  1MBX C;  1RQV A;  3O2B A;  2WA9 A;  2WA8 A; 
#chains in the Genus database with same CATH topology
 5M19 A;  2OTJ W;  3G1B A;  1VQO W;  1YJW W;  1K9M X;  1VQ7 W;  3I56 W;  1YIT W;  3O2H A;  3CC2 W;  4YJX A;  1VQQ A;  3GQ0 A;  4CJN A;  1MWR A;  3CCE W;  1M1K X;  4YJM A;  1W2B V;  1VQN W;  3OW2 V;  1KC8 X;  1CTF A;  4BL3 A;  1MWT A;  3DLL W;  3CCJ W;  1DD3 A;  1YIJ W;  3D3I A;  3O2B A;  3CCV W;  5M1A A;  5HL7 W;  4IOC W;  5M18 A;  1RQS A;  3CXC V;  3ZG0 A;  3O1F B;  5DM6 W;  2OTL W;  5GW7 A;  4CPK A;  3W7T A;  5GAH a;  3CCS W;  3O1F A;  3CCL W;  3CCR W;  2QA4 W;  4WFB W;  3DNJ A;  4WF9 W;  3CPW V;  3CC4 W;  1Q7Y X;  4DKI A;  1MG9 A;  5JVH W;  2QEX W;  3W7S A;  1YHQ W;  1Q81 X;  3ZG5 A;  4WFA W;  3CC7 W;  3CCM W;  1KD1 X;  1JJ2 V;  4U67 W;  2WA8 A;  3CF5 W;  4UY8 Z;  1BXY A;  1M90 X;  1R6O C;  3CCU W;  3GW1 A;  2ZJP W;  3O2O A;  4IO9 W;  1NJI X;  1VQ9 W;  3W7U A;  3GQ1 A;  5GAG a;  4BL2 A;  1VQ5 W;  1R6Q C;  1YI2 W;  1K8A X;  1MWU A;  4WFN W;  3PIP W;  1K73 X;  1MWS A;  1VQK W;  5DM7 W;  3CD6 W;  3CME W;  2ZJQ W;  3I55 W;  5JVG W;  4IOA W;  5CA3 A;  1KQS V;  1Q82 X;  3G6E W;  1YJN W;  5GAE a;  1S72 W;  1VQ6 W;  1MBV B;  3ZFZ A;  3G71 W;  1VQP W;  1VQM W;  1VQ4 W;  1MBU C;  3G19 A;  1RQU A;  1YJ9 W;  4YKA A;  5GAD a;  1N8R X;  4WCE W;  1VQL W;  3G3P A;  1LZW A;  1Q86 X;  1DD4 A;  1QVG V;  3W7W A;  3G4S W;  2ZJR W;  2W9R A;  3CCQ W;  3CMA W;  1MBX C;  1RQV A;  3J7Z Z;  3PIO W;  1VQ8 W;  1QVF V;  2WA9 A;  3W7X A; 
#chains in the Genus database with same CATH homology
 1R6O C;  3GW1 A;  1MBU C;  3G19 A;  1RQU A;  3O2O A;  3G1B A;  1RQS A;  1MBV B;  4YKA A;  3GQ1 A;  3O2H A;  3G3P A;  1LZW A;  3O1F B;  4YJX A;  3GQ0 A;  1DD4 A;  4YJM A;  1R6Q C;  3O1F A;  3DNJ A;  1CTF A;  2W9R A;  1DD3 A;  1MG9 A;  1MBX C;  1RQV A;  3O2B A;  2WA9 A;  2WA8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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