3G1BA

The structure of the m53a mutant of caulobacter crescentus clps protease adaptor protein in complex with wlfvqrdske peptide
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
80
structure length
80
Chain Sequence
LYRVLILNDDYTPAEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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connected with : NaN
molecule tags Peptide binding protein
source organism Caulobacter vibrioides
publication title Molecular basis of substrate selection by the N-end rule adaptor protein ClpS.
pubmed doi rcsb
molecule keywords ATP-dependent Clp protease adapter protein clpS
total genus 22
structure length 80
sequence length 80
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 3g1bA00
2WA8A 4YKAA 1RQVA 1LZWA 3O2HA 3O1FB 1DD3A 2W9RA 4YJMA 1CTFA 3G1BA 1MBXC 4YJXA 1MG9A 3O2BA 1MBUC 1RQSA 1R6OC 3GW1A 3O1FA 3G19A 3GQ1A 3O2OA 3GQ0A 1MBVB 1DD4A 2WA9A 3G3PA 3DNJA 1R6QC 1RQUA
chains in the Genus database with same CATH superfamily
5DM7W 4WFAW 3G4SW 5GADa 1YI2W 1MWTA 1QVGV 3CCMW 3CMAW 3I55W 1M1KX 3O2HA 1BXYA 1N8RX 3ZG5A 1MBXC 3W7TA 5JVHW 3OW2V 2OTJW 1VQ8W 4DKIA 1KC8X 1Q82X 1VQMW 1Q81X 5GAGa 2ZJPW 3I56W 3G3PA 1Q86X 5M18A 1MWRA 2WA8A 1KD1X 1VQPW 3CCEW 1VQQA 1K8AX 3CCSW 1NJIX 1RQVA 3PIOW 1K73X 1DD3A 4CJNA 2W9RA 3CPWV 3G1BA 1YITW 3CD6W 1VQ9W 3G6EW 4YJXA 5CA3A 3O2BA 2OTLW 1S72W 1KQSV 2QEXW 3D3IA 3G19A 3CMEW 3ZG0A 1MWSA 1JJ2V 1VQ6W 3J7ZZ 3CCRW 5JVGW 3CCQW 3W7XA 1YJWW 1VQKW 3DLLW 1YJ9W 3ZFZA 1YHQW 1LZWA 5HL7W 4YJMA 1CTFA 4BL2A 1K9MX 1VQ5W 4WFNW 4IO9W 3PIPW 2ZJRW 1RQSA 1R6OC 1VQNW 3G71W 1VQOW 3CCLW 3CCUW 1VQ7W 3CC4W 4WFBW 3O1FA 4IOAW 3GQ0A 1MBVB 1YIJW 2QA4W 1MWUA 3CF5W 1W2BV 4UY8Z 1VQLW 3DNJA 4WF9W 1RQUA 2ZJQW 3CCJW 3CXCV 1Q7YX 4YKAA 4IOCW 3W7UA 3O1FB 4CPKA 1YJNW 4U67W 1QVFV 1VQ4W 1MG9A 1MBUC 5GW7A 3CC2W 3GW1A 3CC7W 3CCVW 5M1AA 5M19A 3GQ1A 5GAHa 3W7WA 3O2OA 5DM6W 4BL3A 5GAEa 1DD4A 2WA9A 4WCEW 3W7SA 1M90X 1R6QC
chains in the Genus database with same CATH topology
2WA8A 4YKAA 1RQVA 1LZWA 3O2HA 3O1FB 1DD3A 2W9RA 4YJMA 1CTFA 3G1BA 1MBXC 4YJXA 1MG9A 3O2BA 1MBUC 1RQSA 1R6OC 3GW1A 3O1FA 3G19A 3GQ1A 3O2OA 3GQ0A 1MBVB 1DD4A 2WA9A 3G3PA 3DNJA 1R6QC 1RQUA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2WA8 A;  4YKA A;  1RQV A;  1LZW A;  3O2H A;  3O1F B;  1DD3 A;  2W9R A;  4YJM A;  1CTF A;  3G1B A;  1MBX C;  4YJX A;  1MG9 A;  3O2B A;  1MBU C;  1RQS A;  1R6O C;  3GW1 A;  3O1F A;  3G19 A;  3GQ1 A;  3O2O A;  3GQ0 A;  1MBV B;  1DD4 A;  2WA9 A;  3G3P A;  3DNJ A;  1R6Q C;  1RQU A; 
#chains in the Genus database with same CATH topology
 5DM7 W;  4WFA W;  3G4S W;  5GAD a;  1YI2 W;  1MWT A;  1QVG V;  3CCM W;  3CMA W;  3I55 W;  1M1K X;  3O2H A;  1BXY A;  1N8R X;  3ZG5 A;  1MBX C;  3W7T A;  5JVH W;  3OW2 V;  2OTJ W;  1VQ8 W;  4DKI A;  1KC8 X;  1Q82 X;  1VQM W;  1Q81 X;  5GAG a;  2ZJP W;  3I56 W;  3G3P A;  1Q86 X;  5M18 A;  1MWR A;  2WA8 A;  1KD1 X;  1VQP W;  3CCE W;  1VQQ A;  1K8A X;  3CCS W;  1NJI X;  1RQV A;  3PIO W;  1K73 X;  1DD3 A;  4CJN A;  2W9R A;  3CPW V;  3G1B A;  1YIT W;  3CD6 W;  1VQ9 W;  3G6E W;  4YJX A;  5CA3 A;  3O2B A;  2OTL W;  1S72 W;  1KQS V;  2QEX W;  3D3I A;  3G19 A;  3CME W;  3ZG0 A;  1MWS A;  1JJ2 V;  1VQ6 W;  3J7Z Z;  3CCR W;  5JVG W;  3CCQ W;  3W7X A;  1YJW W;  1VQK W;  3DLL W;  1YJ9 W;  3ZFZ A;  1YHQ W;  1LZW A;  5HL7 W;  4YJM A;  1CTF A;  4BL2 A;  1K9M X;  1VQ5 W;  4WFN W;  4IO9 W;  3PIP W;  2ZJR W;  1RQS A;  1R6O C;  1VQN W;  3G71 W;  1VQO W;  3CCL W;  3CCU W;  1VQ7 W;  3CC4 W;  4WFB W;  3O1F A;  4IOA W;  3GQ0 A;  1MBV B;  1YIJ W;  2QA4 W;  1MWU A;  3CF5 W;  1W2B V;  4UY8 Z;  1VQL W;  3DNJ A;  4WF9 W;  1RQU A;  2ZJQ W;  3CCJ W;  3CXC V;  1Q7Y X;  4YKA A;  4IOC W;  3W7U A;  3O1F B;  4CPK A;  1YJN W;  4U67 W;  1QVF V;  1VQ4 W;  1MG9 A;  1MBU C;  5GW7 A;  3CC2 W;  3GW1 A;  3CC7 W;  3CCV W;  5M1A A;  5M19 A;  3GQ1 A;  5GAH a;  3W7W A;  3O2O A;  5DM6 W;  4BL3 A;  5GAE a;  1DD4 A;  2WA9 A;  4WCE W;  3W7S A;  1M90 X;  1R6Q C; 
#chains in the Genus database with same CATH homology
 2WA8 A;  4YKA A;  1RQV A;  1LZW A;  3O2H A;  3O1F B;  1DD3 A;  2W9R A;  4YJM A;  1CTF A;  3G1B A;  1MBX C;  4YJX A;  1MG9 A;  3O2B A;  1MBU C;  1RQS A;  1R6O C;  3GW1 A;  3O1F A;  3G19 A;  3GQ1 A;  3O2O A;  3GQ0 A;  1MBV B;  1DD4 A;  2WA9 A;  3G3P A;  3DNJ A;  1R6Q C;  1RQU A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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