3G3PA

The structure of the m53a mutant of the caulobacter crescentus clps in complex with a peptide containing an amino-terminal norleucine residue
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
82
structure length
82
Chain Sequence
PSLYRVLILNDDYTPAEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of Caulobacter crescentus ClpS in complex with various peptides
rcsb
molecule tags Peptide binding protein
source organism Caulobacter vibrioides
molecule keywords ATP-dependent Clp protease adapter protein clpS
total genus 23
structure length 82
sequence length 82
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-02-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 3g3pA00
1DD4A 3O1FA 1MBUC 1CTFA 3GQ0A 3O1FB 2WA9A 4YKAA 1R6QC 3GQ1A 1MBXC 3G3PA 1LZWA 4YJMA 3G1BA 1MG9A 1RQSA 1MBVB 3GW1A 3G19A 2WA8A 1RQVA 2W9RA 1R6OC 1RQUA 4YJXA 3DNJA 3O2HA 3O2OA 3O2BA 1DD3A
chains in the Genus database with same CATH superfamily
3I56W 3CMAW 1BXYA 5GADa 1MWUA 3O1FA 1Q7YX 1YJ9W 1VQ7W 3GQ0A 2QEXW 1VQQA 1YHQW 3CMEW 1N8RX 3J7ZZ 5M1AA 1K73X 1NJIX 1Q86X 1VQ9W 3CXCV 3ZG0A 3G3PA 4CJNA 4DKIA 4WFAW 3CCRW 3PIOW 3CC4W 4YJMA 3G71W 3CC7W 3W7WA 5GAGa 3GW1A 1VQOW 2WA8A 1MWTA 1R6OC 2ZJPW 5GAHa 1VQ4W 4YJXA 3O2OA 1K9MX 1VQKW 1YIJW 5M18A 1DD3A 3CPWV 2ZJRW 3CCLW 1MBUC 1YJWW 1JJ2V 4BL3A 3O1FB 5DM6W 3GQ1A 1S72W 2ZJQW 5JVGW 4WCEW 5JVHW 1VQPW 3CCMW 1KQSV 3CC2W 3CCVW 1YITW 1KC8X 3CF5W 1MG9A 1RQSA 3OW2V 1VQ6W 1RQVA 4CPKA 1VQ5W 3O2HA 3O2BA 5GW7A 3DLLW 4IOCW 4U67W 1DD4A 2QA4W 1Q81X 4WF9W 2OTLW 1CTFA 2OTJW 3ZG5A 1MWRA 1KD1X 2WA9A 1VQNW 3CCSW 1VQMW 1YI2W 1M90X 3W7XA 1MBXC 3I55W 3G6EW 3ZFZA 4WFNW 3D3IA 1QVGV 4IO9W 3CCQW 3W7SA 4WFBW 1MBVB 3CCJW 3CCEW 3G19A 2W9RA 1QVFV 1RQUA 3DNJA 5M19A 3CCUW 1VQLW 3W7UA 4IOAW 1M1KX 3G4SW 4YKAA 1MWSA 1Q82X 1R6QC 1YJNW 5GAEa 1W2BV 5DM7W 3CD6W 1LZWA 3PIPW 1K8AX 3G1BA 4BL2A 5HL7W 5CA3A 1VQ8W 3W7TA 4UY8Z
chains in the Genus database with same CATH topology
1DD4A 3O1FA 1MBUC 1CTFA 3GQ0A 3O1FB 2WA9A 4YKAA 1R6QC 3GQ1A 1MBXC 3G3PA 1LZWA 4YJMA 3G1BA 1MG9A 1RQSA 1MBVB 3GW1A 3G19A 2WA8A 1RQVA 2W9RA 1R6OC 1RQUA 4YJXA 3DNJA 3O2HA 3O2OA 3O2BA 1DD3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DD4 A;  3O1F A;  1MBU C;  1CTF A;  3GQ0 A;  3O1F B;  2WA9 A;  4YKA A;  1R6Q C;  3GQ1 A;  1MBX C;  3G3P A;  1LZW A;  4YJM A;  3G1B A;  1MG9 A;  1RQS A;  1MBV B;  3GW1 A;  3G19 A;  2WA8 A;  1RQV A;  2W9R A;  1R6O C;  1RQU A;  4YJX A;  3DNJ A;  3O2H A;  3O2O A;  3O2B A;  1DD3 A; 
#chains in the Genus database with same CATH topology
 3I56 W;  3CMA W;  1BXY A;  5GAD a;  1MWU A;  3O1F A;  1Q7Y X;  1YJ9 W;  1VQ7 W;  3GQ0 A;  2QEX W;  1VQQ A;  1YHQ W;  3CME W;  1N8R X;  3J7Z Z;  5M1A A;  1K73 X;  1NJI X;  1Q86 X;  1VQ9 W;  3CXC V;  3ZG0 A;  3G3P A;  4CJN A;  4DKI A;  4WFA W;  3CCR W;  3PIO W;  3CC4 W;  4YJM A;  3G71 W;  3CC7 W;  3W7W A;  5GAG a;  3GW1 A;  1VQO W;  2WA8 A;  1MWT A;  1R6O C;  2ZJP W;  5GAH a;  1VQ4 W;  4YJX A;  3O2O A;  1K9M X;  1VQK W;  1YIJ W;  5M18 A;  1DD3 A;  3CPW V;  2ZJR W;  3CCL W;  1MBU C;  1YJW W;  1JJ2 V;  4BL3 A;  3O1F B;  5DM6 W;  3GQ1 A;  1S72 W;  2ZJQ W;  5JVG W;  4WCE W;  5JVH W;  1VQP W;  3CCM W;  1KQS V;  3CC2 W;  3CCV W;  1YIT W;  1KC8 X;  3CF5 W;  1MG9 A;  1RQS A;  3OW2 V;  1VQ6 W;  1RQV A;  4CPK A;  1VQ5 W;  3O2H A;  3O2B A;  5GW7 A;  3DLL W;  4IOC W;  4U67 W;  1DD4 A;  2QA4 W;  1Q81 X;  4WF9 W;  2OTL W;  1CTF A;  2OTJ W;  3ZG5 A;  1MWR A;  1KD1 X;  2WA9 A;  1VQN W;  3CCS W;  1VQM W;  1YI2 W;  1M90 X;  3W7X A;  1MBX C;  3I55 W;  3G6E W;  3ZFZ A;  4WFN W;  3D3I A;  1QVG V;  4IO9 W;  3CCQ W;  3W7S A;  4WFB W;  1MBV B;  3CCJ W;  3CCE W;  3G19 A;  2W9R A;  1QVF V;  1RQU A;  3DNJ A;  5M19 A;  3CCU W;  1VQL W;  3W7U A;  4IOA W;  1M1K X;  3G4S W;  4YKA A;  1MWS A;  1Q82 X;  1R6Q C;  1YJN W;  5GAE a;  1W2B V;  5DM7 W;  3CD6 W;  1LZW A;  3PIP W;  1K8A X;  3G1B A;  4BL2 A;  5HL7 W;  5CA3 A;  1VQ8 W;  3W7T A;  4UY8 Z; 
#chains in the Genus database with same CATH homology
 1DD4 A;  3O1F A;  1MBU C;  1CTF A;  3GQ0 A;  3O1F B;  2WA9 A;  4YKA A;  1R6Q C;  3GQ1 A;  1MBX C;  3G3P A;  1LZW A;  4YJM A;  3G1B A;  1MG9 A;  1RQS A;  1MBV B;  3GW1 A;  3G19 A;  2WA8 A;  1RQV A;  2W9R A;  1R6O C;  1RQU A;  4YJX A;  3DNJ A;  3O2H A;  3O2O A;  3O2B A;  1DD3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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