3G3PA

The structure of the m53a mutant of the caulobacter crescentus clps in complex with a peptide containing an amino-terminal norleucine residue
Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
82
structure length
82
Chain Sequence
PSLYRVLILNDDYTPAEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
S1 (41-46)AH1 (53-64)AH2 (68-81)EMPTYTIV1 (48-51)Updating...
connected with : NaN
molecule tags Peptide binding protein
source organism Caulobacter vibrioides
publication title Structure of Caulobacter crescentus ClpS in complex with various peptides
rcsb
molecule keywords ATP-dependent Clp protease adapter protein clpS
total genus 23
structure length 82
sequence length 82
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-02-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 3g3pA00
3GQ1A 1MBXC 4YJXA 2WA8A 3O2OA 1R6OC 2W9RA 3O2BA 1R6QC 3G19A 3GW1A 3O1FA 4YKAA 1CTFA 3G1BA 1DD3A 1MG9A 1LZWA 1RQVA 3O1FB 1DD4A 3O2HA 1RQUA 2WA9A 4YJMA 1MBVB 1RQSA 3GQ0A 1MBUC 3DNJA 3G3PA
chains in the Genus database with same CATH superfamily
1VQ7W 4YJXA 3W7WA 3CPWV 1QVFV 5GAEa 5DM7W 3W7XA 3CC2W 3G19A 1YI2W 5M18A 1YJ9W 3CCVW 3CF5W 3G71W 2ZJRW 3PIPW 1VQPW 1VQLW 3ZG5A 1VQKW 1YJWW 1KQSV 5GAHa 4WF9W 5CA3A 3I55W 1RQVA 4IOAW 5DM6W 3G4SW 1Q81X 3G6EW 4YJMA 3W7UA 3CCSW 5GAGa 3CCLW 3G3PA 3GQ1A 1VQNW 1K9MX 1R6QC 3CC4W 3CCEW 1JJ2V 2ZJQW 3O1FA 4BL3A 3CMAW 5GADa 3W7SA 1W2BV 1VQQA 1DD3A 3DLLW 1YJNW 3O1FB 1Q7YX 4WCEW 4CPKA 3W7TA 3O2HA 3ZFZA 3CCUW 4IO9W 1K73X 4WFNW 3CCMW 4IOCW 1MBUC 1VQ5W 4WFAW 4UY8Z 3I56W 2ZJPW 1MWTA 1QVGV 2OTLW 1R6OC 2W9RA 1MWUA 4WFBW 3CD6W 3GW1A 1VQ4W 1VQ9W 1Q86X 1N8RX 4YKAA 1VQ8W 4U67W 1VQOW 5HL7W 3CC7W 1YIJW 1CTFA 5JVHW 3CXCV 1VQMW 1DD4A 1M1KX 1RQUA 5M1AA 1MBVB 1RQSA 3CMEW 3DNJA 3ZG0A 1MBXC 2WA8A 1KD1X 3O2OA 1K8AX 3O2BA 3CCRW 1BXYA 2OTJW 1KC8X 4CJNA 3D3IA 3PIOW 3OW2V 1YITW 3G1BA 1M90X 5M19A 1MWRA 3J7ZZ 4DKIA 1MG9A 1Q82X 2QEXW 5JVGW 1LZWA 3CCQW 3CCJW 1VQ6W 1YHQW 4BL2A 1S72W 2WA9A 1MWSA 3GQ0A 2QA4W 5GW7A 1NJIX
chains in the Genus database with same CATH topology
3GQ1A 1MBXC 4YJXA 2WA8A 3O2OA 1R6OC 2W9RA 3O2BA 1R6QC 3G19A 3GW1A 3O1FA 4YKAA 1CTFA 3G1BA 1DD3A 1MG9A 1LZWA 1RQVA 3O1FB 1DD4A 3O2HA 1RQUA 2WA9A 4YJMA 1MBVB 1RQSA 3GQ0A 1MBUC 3DNJA 3G3PA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3GQ1 A;  1MBX C;  4YJX A;  2WA8 A;  3O2O A;  1R6O C;  2W9R A;  3O2B A;  1R6Q C;  3G19 A;  3GW1 A;  3O1F A;  4YKA A;  1CTF A;  3G1B A;  1DD3 A;  1MG9 A;  1LZW A;  1RQV A;  3O1F B;  1DD4 A;  3O2H A;  1RQU A;  2WA9 A;  4YJM A;  1MBV B;  1RQS A;  3GQ0 A;  1MBU C;  3DNJ A;  3G3P A; 
#chains in the Genus database with same CATH topology
 1VQ7 W;  4YJX A;  3W7W A;  3CPW V;  1QVF V;  5GAE a;  5DM7 W;  3W7X A;  3CC2 W;  3G19 A;  1YI2 W;  5M18 A;  1YJ9 W;  3CCV W;  3CF5 W;  3G71 W;  2ZJR W;  3PIP W;  1VQP W;  1VQL W;  3ZG5 A;  1VQK W;  1YJW W;  1KQS V;  5GAH a;  4WF9 W;  5CA3 A;  3I55 W;  1RQV A;  4IOA W;  5DM6 W;  3G4S W;  1Q81 X;  3G6E W;  4YJM A;  3W7U A;  3CCS W;  5GAG a;  3CCL W;  3G3P A;  3GQ1 A;  1VQN W;  1K9M X;  1R6Q C;  3CC4 W;  3CCE W;  1JJ2 V;  2ZJQ W;  3O1F A;  4BL3 A;  3CMA W;  5GAD a;  3W7S A;  1W2B V;  1VQQ A;  1DD3 A;  3DLL W;  1YJN W;  3O1F B;  1Q7Y X;  4WCE W;  4CPK A;  3W7T A;  3O2H A;  3ZFZ A;  3CCU W;  4IO9 W;  1K73 X;  4WFN W;  3CCM W;  4IOC W;  1MBU C;  1VQ5 W;  4WFA W;  4UY8 Z;  3I56 W;  2ZJP W;  1MWT A;  1QVG V;  2OTL W;  1R6O C;  2W9R A;  1MWU A;  4WFB W;  3CD6 W;  3GW1 A;  1VQ4 W;  1VQ9 W;  1Q86 X;  1N8R X;  4YKA A;  1VQ8 W;  4U67 W;  1VQO W;  5HL7 W;  3CC7 W;  1YIJ W;  1CTF A;  5JVH W;  3CXC V;  1VQM W;  1DD4 A;  1M1K X;  1RQU A;  5M1A A;  1MBV B;  1RQS A;  3CME W;  3DNJ A;  3ZG0 A;  1MBX C;  2WA8 A;  1KD1 X;  3O2O A;  1K8A X;  3O2B A;  3CCR W;  1BXY A;  2OTJ W;  1KC8 X;  4CJN A;  3D3I A;  3PIO W;  3OW2 V;  1YIT W;  3G1B A;  1M90 X;  5M19 A;  1MWR A;  3J7Z Z;  4DKI A;  1MG9 A;  1Q82 X;  2QEX W;  5JVG W;  1LZW A;  3CCQ W;  3CCJ W;  1VQ6 W;  1YHQ W;  4BL2 A;  1S72 W;  2WA9 A;  1MWS A;  3GQ0 A;  2QA4 W;  5GW7 A;  1NJI X; 
#chains in the Genus database with same CATH homology
 3GQ1 A;  1MBX C;  4YJX A;  2WA8 A;  3O2O A;  1R6O C;  2W9R A;  3O2B A;  1R6Q C;  3G19 A;  3GW1 A;  3O1F A;  4YKA A;  1CTF A;  3G1B A;  1DD3 A;  1MG9 A;  1LZW A;  1RQV A;  3O1F B;  1DD4 A;  3O2H A;  1RQU A;  2WA9 A;  4YJM A;  1MBV B;  1RQS A;  3GQ0 A;  1MBU C;  3DNJ A;  3G3P A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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