3GQ0A

The structure of the caulobacter crescentus clps protease adaptor protein - apo structure with no peptide
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
82
structure length
82
Chain Sequence
PSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
S1 (41-46)AH1 (53-64)AH2 (68-81)EMPTYTIV1 (48-51)Updating...
connected with : NaN
molecule tags Peptide binding protein
source organism Caulobacter vibrioides
publication title Molecular basis of substrate selection by the N-end rule adaptor protein ClpS.
pubmed doi rcsb
molecule keywords ATP-dependent Clp protease adapter protein clpS
total genus 25
structure length 82
sequence length 82
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 3gq0A00
1R6OC 1DD4A 1LZWA 3G1BA 1MBXC 1MG9A 4YJMA 1RQVA 1MBUC 3GW1A 3O2OA 3O1FA 1DD3A 1RQSA 3G3PA 3GQ1A 3O2HA 2WA9A 4YJXA 3DNJA 2W9RA 1MBVB 3GQ0A 3O1FB 3O2BA 2WA8A 1CTFA 3G19A 1R6QC 1RQUA 4YKAA
chains in the Genus database with same CATH superfamily
1MWTA 3PIOW 4YJMA 1W2BV 1RQVA 3W7TA 2OTJW 4WFAW 3O2OA 1KQSV 3CCLW 4U67W 2ZJRW 3W7WA 1YITW 3CCUW 3D3IA 1VQQA 4IO9W 1MBVB 3GQ0A 3W7XA 3O1FB 3J7ZZ 3CCRW 1KD1X 3CCMW 1VQOW 4WFNW 1VQ9W 3CCVW 4DKIA 3CC4W 1YHQW 1Q81X 1MWSA 4YKAA 3CCSW 5M18A 3CF5W 5JVGW 4IOCW 1S72W 4WFBW 3CCQW 1JJ2V 3G1BA 1QVGV 1Q7YX 2ZJPW 3GW1A 1M1KX 3O1FA 5M19A 5CA3A 5HL7W 1RQSA 4BL2A 5JVHW 4CPKA 1VQ5W 2WA9A 1VQMW 4YJXA 3CC2W 5GW7A 3I55W 2W9RA 4BL3A 1YJWW 5GAGa 3I56W 1R6QC 1M90X 2QA4W 5GADa 1MWUA 3CC7W 5GAEa 1VQ6W 3CD6W 1R6OC 1DD4A 5GAHa 4WF9W 3W7SA 1K73X 3ZG0A 1YIJW 3G3PA 3GQ1A 1K8AX 2QEXW 3CCEW 1KC8X 3CMEW 1YI2W 1YJ9W 1Q86X 1VQNW 3O2BA 2WA8A 3G19A 3CPWV 1N8RX 5DM6W 3W7UA 4WCEW 1VQPW 1BXYA 1VQ7W 1VQ8W 1QVFV 2ZJQW 3CCJW 1VQKW 4UY8Z 1LZWA 3ZFZA 1YJNW 3G6EW 1MBXC 1MG9A 1NJIX 1MBUC 3OW2V 1Q82X 1DD3A 1VQLW 5DM7W 3CXCV 3O2HA 1VQ4W 2OTLW 4IOAW 5M1AA 3DNJA 1MWRA 3ZG5A 3DLLW 3G71W 3G4SW 3CMAW 1CTFA 1RQUA 4CJNA 1K9MX 3PIPW
chains in the Genus database with same CATH topology
1R6OC 1DD4A 1LZWA 3G1BA 1MBXC 1MG9A 4YJMA 1RQVA 1MBUC 3GW1A 3O2OA 3O1FA 1DD3A 1RQSA 3G3PA 3GQ1A 3O2HA 2WA9A 4YJXA 3DNJA 2W9RA 1MBVB 3GQ0A 3O1FB 3O2BA 2WA8A 1CTFA 3G19A 1R6QC 1RQUA 4YKAA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1R6O C;  1DD4 A;  1LZW A;  3G1B A;  1MBX C;  1MG9 A;  4YJM A;  1RQV A;  1MBU C;  3GW1 A;  3O2O A;  3O1F A;  1DD3 A;  1RQS A;  3G3P A;  3GQ1 A;  3O2H A;  2WA9 A;  4YJX A;  3DNJ A;  2W9R A;  1MBV B;  3GQ0 A;  3O1F B;  3O2B A;  2WA8 A;  1CTF A;  3G19 A;  1R6Q C;  1RQU A;  4YKA A; 
#chains in the Genus database with same CATH topology
 1MWT A;  3PIO W;  4YJM A;  1W2B V;  1RQV A;  3W7T A;  2OTJ W;  4WFA W;  3O2O A;  1KQS V;  3CCL W;  4U67 W;  2ZJR W;  3W7W A;  1YIT W;  3CCU W;  3D3I A;  1VQQ A;  4IO9 W;  1MBV B;  3GQ0 A;  3W7X A;  3O1F B;  3J7Z Z;  3CCR W;  1KD1 X;  3CCM W;  1VQO W;  4WFN W;  1VQ9 W;  3CCV W;  4DKI A;  3CC4 W;  1YHQ W;  1Q81 X;  1MWS A;  4YKA A;  3CCS W;  5M18 A;  3CF5 W;  5JVG W;  4IOC W;  1S72 W;  4WFB W;  3CCQ W;  1JJ2 V;  3G1B A;  1QVG V;  1Q7Y X;  2ZJP W;  3GW1 A;  1M1K X;  3O1F A;  5M19 A;  5CA3 A;  5HL7 W;  1RQS A;  4BL2 A;  5JVH W;  4CPK A;  1VQ5 W;  2WA9 A;  1VQM W;  4YJX A;  3CC2 W;  5GW7 A;  3I55 W;  2W9R A;  4BL3 A;  1YJW W;  5GAG a;  3I56 W;  1R6Q C;  1M90 X;  2QA4 W;  5GAD a;  1MWU A;  3CC7 W;  5GAE a;  1VQ6 W;  3CD6 W;  1R6O C;  1DD4 A;  5GAH a;  4WF9 W;  3W7S A;  1K73 X;  3ZG0 A;  1YIJ W;  3G3P A;  3GQ1 A;  1K8A X;  2QEX W;  3CCE W;  1KC8 X;  3CME W;  1YI2 W;  1YJ9 W;  1Q86 X;  1VQN W;  3O2B A;  2WA8 A;  3G19 A;  3CPW V;  1N8R X;  5DM6 W;  3W7U A;  4WCE W;  1VQP W;  1BXY A;  1VQ7 W;  1VQ8 W;  1QVF V;  2ZJQ W;  3CCJ W;  1VQK W;  4UY8 Z;  1LZW A;  3ZFZ A;  1YJN W;  3G6E W;  1MBX C;  1MG9 A;  1NJI X;  1MBU C;  3OW2 V;  1Q82 X;  1DD3 A;  1VQL W;  5DM7 W;  3CXC V;  3O2H A;  1VQ4 W;  2OTL W;  4IOA W;  5M1A A;  3DNJ A;  1MWR A;  3ZG5 A;  3DLL W;  3G71 W;  3G4S W;  3CMA W;  1CTF A;  1RQU A;  4CJN A;  1K9M X;  3PIP W; 
#chains in the Genus database with same CATH homology
 1R6O C;  1DD4 A;  1LZW A;  3G1B A;  1MBX C;  1MG9 A;  4YJM A;  1RQV A;  1MBU C;  3GW1 A;  3O2O A;  3O1F A;  1DD3 A;  1RQS A;  3G3P A;  3GQ1 A;  3O2H A;  2WA9 A;  4YJX A;  3DNJ A;  2W9R A;  1MBV B;  3GQ0 A;  3O1F B;  3O2B A;  2WA8 A;  1CTF A;  3G19 A;  1R6Q C;  1RQU A;  4YKA A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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