3GW1A

The structure of the caulobacter crescentus clps protease adaptor protein in complex with fgg tripeptide
Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
82
structure length
82
Chain Sequence
PSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
AH1 (53-64)AH2 (68-81)EMPTYTIV1 (48-51)S1 (40-46)Updating...
connected with : NaN
molecule tags Peptide binding protein
source organism Caulobacter vibrioides
publication title Molecular basis of substrate selection by the N-end rule adaptor protein ClpS.
pubmed doi rcsb
molecule keywords ATP-dependent Clp protease adapter protein clpS
total genus 27
structure length 82
sequence length 82
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-03-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 3gw1A00
2WA9A 4YKAA 1RQVA 3GQ0A 1R6OC 1RQUA 3DNJA 1CTFA 3G1BA 4YJXA 1RQSA 3O1FA 3G19A 1DD4A 3O2BA 1DD3A 3G3PA 1MBUC 2W9RA 3O1FB 3GW1A 1R6QC 1MBXC 3GQ1A 3O2OA 4YJMA 3O2HA 1LZWA 2WA8A 1MG9A 1MBVB
chains in the Genus database with same CATH superfamily
4YKAA 3PIPW 3CCMW 5JVGW 3GQ0A 1R6OC 1RQUA 3I56W 4YJXA 4WF9W 1K73X 5HL7W 1S72W 1KC8X 1DD3A 3OW2V 1VQNW 2ZJPW 5M19A 1R6QC 4IOAW 3CPWV 3ZG5A 3ZG0A 3DLLW 5M1AA 2OTLW 1VQOW 3W7TA 2WA8A 3CMEW 1MWTA 1VQ6W 1VQPW 1VQ5W 1VQQA 3W7WA 1QVGV 1YJ9W 3DNJA 1YIJW 5M18A 1YITW 1VQ7W 1CTFA 4BL3A 4CPKA 3J7ZZ 1YI2W 3CCJW 1MWUA 1DD4A 3O2BA 3CC7W 5GW7A 1YJNW 3G3PA 2W9RA 3CCSW 1VQMW 1KD1X 3CCLW 3CF5W 3G6EW 1W2BV 4YJMA 1VQ9W 5GAEa 3PIOW 1BXYA 5CA3A 1LZWA 1YJWW 1K8AX 1MG9A 3CCVW 2ZJRW 1N8RX 2QEXW 4CJNA 3CCEW 3G1BA 1MWRA 4WFBW 1MWSA 3G19A 1Q82X 1NJIX 2QA4W 3W7XA 4U67W 5GAHa 1MBUC 3O1FB 5GAGa 3GW1A 4IOCW 1VQKW 3O2OA 4WFNW 3CC2W 5DM6W 3CCRW 3G71W 3CCQW 1Q7YX 1MBVB 1VQLW 1KQSV 1Q86X 2WA9A 3I55W 3D3IA 1QVFV 1M90X 4UY8Z 1RQVA 4DKIA 1YHQW 5DM7W 4WCEW 3CD6W 1JJ2V 2ZJQW 1RQSA 3CMAW 3O1FA 3W7UA 1VQ8W 1M1KX 2OTJW 3ZFZA 3CC4W 3W7SA 1VQ4W 1Q81X 1MBXC 4BL2A 3GQ1A 3G4SW 5JVHW 1K9MX 4WFAW 3CXCV 4IO9W 3O2HA 3CCUW 5GADa
chains in the Genus database with same CATH topology
2WA9A 4YKAA 1RQVA 3GQ0A 1R6OC 1RQUA 3DNJA 1CTFA 3G1BA 4YJXA 1RQSA 3O1FA 3G19A 1DD4A 3O2BA 1DD3A 3G3PA 1MBUC 2W9RA 3O1FB 3GW1A 1R6QC 1MBXC 3GQ1A 3O2OA 4YJMA 3O2HA 1LZWA 2WA8A 1MG9A 1MBVB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2WA9 A;  4YKA A;  1RQV A;  3GQ0 A;  1R6O C;  1RQU A;  3DNJ A;  1CTF A;  3G1B A;  4YJX A;  1RQS A;  3O1F A;  3G19 A;  1DD4 A;  3O2B A;  1DD3 A;  3G3P A;  1MBU C;  2W9R A;  3O1F B;  3GW1 A;  1R6Q C;  1MBX C;  3GQ1 A;  3O2O A;  4YJM A;  3O2H A;  1LZW A;  2WA8 A;  1MG9 A;  1MBV B; 
#chains in the Genus database with same CATH topology
 4YKA A;  3PIP W;  3CCM W;  5JVG W;  3GQ0 A;  1R6O C;  1RQU A;  3I56 W;  4YJX A;  4WF9 W;  1K73 X;  5HL7 W;  1S72 W;  1KC8 X;  1DD3 A;  3OW2 V;  1VQN W;  2ZJP W;  5M19 A;  1R6Q C;  4IOA W;  3CPW V;  3ZG5 A;  3ZG0 A;  3DLL W;  5M1A A;  2OTL W;  1VQO W;  3W7T A;  2WA8 A;  3CME W;  1MWT A;  1VQ6 W;  1VQP W;  1VQ5 W;  1VQQ A;  3W7W A;  1QVG V;  1YJ9 W;  3DNJ A;  1YIJ W;  5M18 A;  1YIT W;  1VQ7 W;  1CTF A;  4BL3 A;  4CPK A;  3J7Z Z;  1YI2 W;  3CCJ W;  1MWU A;  1DD4 A;  3O2B A;  3CC7 W;  5GW7 A;  1YJN W;  3G3P A;  2W9R A;  3CCS W;  1VQM W;  1KD1 X;  3CCL W;  3CF5 W;  3G6E W;  1W2B V;  4YJM A;  1VQ9 W;  5GAE a;  3PIO W;  1BXY A;  5CA3 A;  1LZW A;  1YJW W;  1K8A X;  1MG9 A;  3CCV W;  2ZJR W;  1N8R X;  2QEX W;  4CJN A;  3CCE W;  3G1B A;  1MWR A;  4WFB W;  1MWS A;  3G19 A;  1Q82 X;  1NJI X;  2QA4 W;  3W7X A;  4U67 W;  5GAH a;  1MBU C;  3O1F B;  5GAG a;  3GW1 A;  4IOC W;  1VQK W;  3O2O A;  4WFN W;  3CC2 W;  5DM6 W;  3CCR W;  3G71 W;  3CCQ W;  1Q7Y X;  1MBV B;  1VQL W;  1KQS V;  1Q86 X;  2WA9 A;  3I55 W;  3D3I A;  1QVF V;  1M90 X;  4UY8 Z;  1RQV A;  4DKI A;  1YHQ W;  5DM7 W;  4WCE W;  3CD6 W;  1JJ2 V;  2ZJQ W;  1RQS A;  3CMA W;  3O1F A;  3W7U A;  1VQ8 W;  1M1K X;  2OTJ W;  3ZFZ A;  3CC4 W;  3W7S A;  1VQ4 W;  1Q81 X;  1MBX C;  4BL2 A;  3GQ1 A;  3G4S W;  5JVH W;  1K9M X;  4WFA W;  3CXC V;  4IO9 W;  3O2H A;  3CCU W;  5GAD a; 
#chains in the Genus database with same CATH homology
 2WA9 A;  4YKA A;  1RQV A;  3GQ0 A;  1R6O C;  1RQU A;  3DNJ A;  1CTF A;  3G1B A;  4YJX A;  1RQS A;  3O1F A;  3G19 A;  1DD4 A;  3O2B A;  1DD3 A;  3G3P A;  1MBU C;  2W9R A;  3O1F B;  3GW1 A;  1R6Q C;  1MBX C;  3GQ1 A;  3O2O A;  4YJM A;  3O2H A;  1LZW A;  2WA8 A;  1MG9 A;  1MBV B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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