3O1FA

P1 crystal form of e. coli clps at 1.4 a resolution
Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
81
structure length
80
Chain Sequence
SMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAVNKYARENEHPLLCTLEKA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (40-51)AH3 (78-95)EMPTYS2 (70-76)S1 (28-33)TI1 (35-38)AH2 (55-68)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Escherichia coli
publication title The ClpS Adaptor Mediates Staged Delivery of N-End Rule Substrates to the AAA+ ClpAP Protease.
pubmed doi rcsb
molecule keywords ATP-dependent Clp protease adapter protein clpS
total genus 24
structure length 80
sequence length 81
ec nomenclature
pdb deposition date 2010-07-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 3o1fA00
1LZWA 1RQUA 2W9RA 1R6OC 1RQSA 1MBXC 1CTFA 1RQVA 3GQ1A 3O1FA 2WA9A 4YJMA 1MG9A 3G1BA 3G3PA 3GW1A 3O2HA 3G19A 3GQ0A 4YKAA 2WA8A 4YJXA 3DNJA 3O1FB 1R6QC 1DD3A 3O2BA 3O2OA 1DD4A 1MBUC 1MBVB
chains in the Genus database with same CATH superfamily
1LZWA 1BXYA 5CA3A 1VQNW 3CCVW 3OW2V 1Q82X 1RQVA 3GQ1A 3O1FA 3ZG5A 4YJMA 3G1BA 4UY8Z 3O2HA 3W7UA 1VQ9W 4IO9W 1MWRA 3W7TA 5GW7A 3DNJA 1Q81X 3CCUW 1K8AX 5HL7W 1QVFV 3CC4W 3CMAW 1YITW 3J7ZZ 1MBVB 4WCEW 1MBUC 2OTLW 4DKIA 1MWUA 1K73X 1CTFA 1MWTA 1VQMW 1VQOW 3ZG0A 3CPWV 1VQ8W 3CMEW 3G19A 3CCRW 5GAHa 3I55W 3CD6W 5DM6W 1YIJW 1S72W 3W7WA 2WA8A 4CPKA 4WFNW 4BL2A 1VQKW 1YJ9W 1KD1X 4YJXA 5GADa 3G6EW 1Q7YX 1QVGV 3CCEW 2ZJQW 1KQSV 1YJWW 4WFBW 4WF9W 5M18A 1JJ2V 1RQUA 3CC7W 1R6OC 1MBXC 4BL3A 3G4SW 4CJNA 3CF5W 3CCJW 3DLLW 3W7XA 3ZFZA 1VQ7W 5JVGW 3I56W 5GAEa 2QEXW 5GAGa 1YI2W 1W2BV 3D3IA 3CC2W 5M1AA 1M90X 3O2OA 3CCSW 1YHQW 1VQLW 3CXCV 1N8RX 3CCQW 2W9RA 2QA4W 5JVHW 1KC8X 1NJIX 1M1KX 1RQSA 3W7SA 5M19A 4IOAW 1VQ6W 2WA9A 5DM7W 1MG9A 3G3PA 3GW1A 1Q86X 3PIOW 3GQ0A 2ZJRW 4YKAA 3CCMW 3G71W 1VQPW 3PIPW 4U67W 1YJNW 1K9MX 1VQQA 1MWSA 2OTJW 3O1FB 1R6QC 1DD3A 4IOCW 3O2BA 4WFAW 3CCLW 1VQ5W 2ZJPW 1DD4A 1VQ4W
chains in the Genus database with same CATH topology
1LZWA 1RQUA 2W9RA 1R6OC 1RQSA 1MBXC 1CTFA 1RQVA 3GQ1A 3O1FA 2WA9A 4YJMA 1MG9A 3G1BA 3G3PA 3GW1A 3O2HA 3G19A 3GQ0A 4YKAA 2WA8A 4YJXA 3DNJA 3O1FB 1R6QC 1DD3A 3O2BA 3O2OA 1DD4A 1MBUC 1MBVB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LZW A;  1RQU A;  2W9R A;  1R6O C;  1RQS A;  1MBX C;  1CTF A;  1RQV A;  3GQ1 A;  3O1F A;  2WA9 A;  4YJM A;  1MG9 A;  3G1B A;  3G3P A;  3GW1 A;  3O2H A;  3G19 A;  3GQ0 A;  4YKA A;  2WA8 A;  4YJX A;  3DNJ A;  3O1F B;  1R6Q C;  1DD3 A;  3O2B A;  3O2O A;  1DD4 A;  1MBU C;  1MBV B; 
#chains in the Genus database with same CATH topology
 1LZW A;  1BXY A;  5CA3 A;  1VQN W;  3CCV W;  3OW2 V;  1Q82 X;  1RQV A;  3GQ1 A;  3O1F A;  3ZG5 A;  4YJM A;  3G1B A;  4UY8 Z;  3O2H A;  3W7U A;  1VQ9 W;  4IO9 W;  1MWR A;  3W7T A;  5GW7 A;  3DNJ A;  1Q81 X;  3CCU W;  1K8A X;  5HL7 W;  1QVF V;  3CC4 W;  3CMA W;  1YIT W;  3J7Z Z;  1MBV B;  4WCE W;  1MBU C;  2OTL W;  4DKI A;  1MWU A;  1K73 X;  1CTF A;  1MWT A;  1VQM W;  1VQO W;  3ZG0 A;  3CPW V;  1VQ8 W;  3CME W;  3G19 A;  3CCR W;  5GAH a;  3I55 W;  3CD6 W;  5DM6 W;  1YIJ W;  1S72 W;  3W7W A;  2WA8 A;  4CPK A;  4WFN W;  4BL2 A;  1VQK W;  1YJ9 W;  1KD1 X;  4YJX A;  5GAD a;  3G6E W;  1Q7Y X;  1QVG V;  3CCE W;  2ZJQ W;  1KQS V;  1YJW W;  4WFB W;  4WF9 W;  5M18 A;  1JJ2 V;  1RQU A;  3CC7 W;  1R6O C;  1MBX C;  4BL3 A;  3G4S W;  4CJN A;  3CF5 W;  3CCJ W;  3DLL W;  3W7X A;  3ZFZ A;  1VQ7 W;  5JVG W;  3I56 W;  5GAE a;  2QEX W;  5GAG a;  1YI2 W;  1W2B V;  3D3I A;  3CC2 W;  5M1A A;  1M90 X;  3O2O A;  3CCS W;  1YHQ W;  1VQL W;  3CXC V;  1N8R X;  3CCQ W;  2W9R A;  2QA4 W;  5JVH W;  1KC8 X;  1NJI X;  1M1K X;  1RQS A;  3W7S A;  5M19 A;  4IOA W;  1VQ6 W;  2WA9 A;  5DM7 W;  1MG9 A;  3G3P A;  3GW1 A;  1Q86 X;  3PIO W;  3GQ0 A;  2ZJR W;  4YKA A;  3CCM W;  3G71 W;  1VQP W;  3PIP W;  4U67 W;  1YJN W;  1K9M X;  1VQQ A;  1MWS A;  2OTJ W;  3O1F B;  1R6Q C;  1DD3 A;  4IOC W;  3O2B A;  4WFA W;  3CCL W;  1VQ5 W;  2ZJP W;  1DD4 A;  1VQ4 W; 
#chains in the Genus database with same CATH homology
 1LZW A;  1RQU A;  2W9R A;  1R6O C;  1RQS A;  1MBX C;  1CTF A;  1RQV A;  3GQ1 A;  3O1F A;  2WA9 A;  4YJM A;  1MG9 A;  3G1B A;  3G3P A;  3GW1 A;  3O2H A;  3G19 A;  3GQ0 A;  4YKA A;  2WA8 A;  4YJX A;  3DNJ A;  3O1F B;  1R6Q C;  1DD3 A;  3O2B A;  3O2O A;  1DD4 A;  1MBU C;  1MBV B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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