3O2BA

E. coli clps in complex with a phe n-end rule peptide
Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
84
structure length
84
Chain Sequence
KPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
AH2 (55-68)S1 (27-33)EMPTYAH3 (78-95)S2 (70-77)TI1 (35-38)AH1 (40-51)Updating...
connected with : NaN
molecule tags Peptide binding protein
source organism Escherichia coli
publication title The ClpS adaptor mediates staged delivery of N-end rule substrates to the AAA+ ClpAP protease.
pubmed doi rcsb
molecule keywords ATP-dependent Clp protease adaptor protein ClpS
total genus 24
structure length 84
sequence length 84
chains with identical sequence C
ec nomenclature
pdb deposition date 2010-07-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 3o2bA00
1R6QC 1MBUC 1RQSA 3O1FB 3O2BA 1RQUA 1MBVB 2WA8A 3O2HA 4YJMA 1RQVA 1CTFA 3G3PA 2W9RA 1MG9A 3G1BA 3GQ1A 1LZWA 1DD4A 1DD3A 1MBXC 3GW1A 4YKAA 3DNJA 2WA9A 3G19A 3O1FA 3GQ0A 4YJXA 3O2OA 1R6OC
chains in the Genus database with same CATH superfamily
1R6QC 1MWUA 3CMAW 4BL2A 5JVGW 3O2BA 2WA8A 4YJMA 3O2HA 1YJWW 1CTFA 5DM6W 4IOAW 1VQLW 1QVGV 3CC2W 1MG9A 3G1BA 5GW7A 1VQ4W 3CC4W 2OTLW 4IOCW 4U67W 3W7XA 3CCVW 3CC7W 3I56W 1YI2W 1NJIX 3W7TA 4CPKA 2ZJQW 1VQ8W 1VQPW 3G19A 1K8AX 2QEXW 1VQNW 4YJXA 1VQ9W 1Q82X 1N8RX 3D3IA 3J7ZZ 1W2BV 3G4SW 3CCRW 4WFAW 3CCEW 4IO9W 2ZJPW 1K73X 3CCQW 1VQ6W 4WFBW 1MWTA 1VQQA 4BL3A 1Q86X 3CPWV 5GAGa 4YKAA 1Q81X 1BXYA 3CCJW 1YITW 5HL7W 3CXCV 1VQKW 3PIOW 3OW2V 3O1FA 3GQ0A 3ZG5A 3O2OA 5CA3A 3CMEW 3ZG0A 1YHQW 5M19A 2OTJW 3W7SA 1RQSA 1MWRA 5M18A 1MBVB 3CCMW 1MWSA 3I55W 3CF5W 3PIPW 3CCUW 1VQOW 3G71W 1DD4A 1LZWA 4WCEW 1DD3A 1MBXC 1K9MX 1VQ5W 3W7UA 4WF9W 3G6EW 5DM7W 3DNJA 2WA9A 3CCLW 1M1KX 5GAHa 3CD6W 1MBUC 1KC8X 1M90X 3O1FB 1KD1X 2ZJRW 1RQUA 5JVHW 1RQVA 1VQ7W 3G3PA 3DLLW 2W9RA 4CJNA 1YJNW 1Q7YX 3GQ1A 5GAEa 3ZFZA 5GADa 3CCSW 4DKIA 4UY8Z 1KQSV 3GW1A 5M1AA 4WFNW 1YJ9W 1QVFV 3W7WA 1VQMW 1S72W 1YIJW 2QA4W 1JJ2V 1R6OC
chains in the Genus database with same CATH topology
1R6QC 1MBUC 1RQSA 3O1FB 3O2BA 1RQUA 1MBVB 2WA8A 3O2HA 4YJMA 1RQVA 1CTFA 3G3PA 2W9RA 1MG9A 3G1BA 3GQ1A 1LZWA 1DD4A 1DD3A 1MBXC 3GW1A 4YKAA 3DNJA 2WA9A 3G19A 3O1FA 3GQ0A 4YJXA 3O2OA 1R6OC
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1R6Q C;  1MBU C;  1RQS A;  3O1F B;  3O2B A;  1RQU A;  1MBV B;  2WA8 A;  3O2H A;  4YJM A;  1RQV A;  1CTF A;  3G3P A;  2W9R A;  1MG9 A;  3G1B A;  3GQ1 A;  1LZW A;  1DD4 A;  1DD3 A;  1MBX C;  3GW1 A;  4YKA A;  3DNJ A;  2WA9 A;  3G19 A;  3O1F A;  3GQ0 A;  4YJX A;  3O2O A;  1R6O C; 
#chains in the Genus database with same CATH topology
 1R6Q C;  1MWU A;  3CMA W;  4BL2 A;  5JVG W;  3O2B A;  2WA8 A;  4YJM A;  3O2H A;  1YJW W;  1CTF A;  5DM6 W;  4IOA W;  1VQL W;  1QVG V;  3CC2 W;  1MG9 A;  3G1B A;  5GW7 A;  1VQ4 W;  3CC4 W;  2OTL W;  4IOC W;  4U67 W;  3W7X A;  3CCV W;  3CC7 W;  3I56 W;  1YI2 W;  1NJI X;  3W7T A;  4CPK A;  2ZJQ W;  1VQ8 W;  1VQP W;  3G19 A;  1K8A X;  2QEX W;  1VQN W;  4YJX A;  1VQ9 W;  1Q82 X;  1N8R X;  3D3I A;  3J7Z Z;  1W2B V;  3G4S W;  3CCR W;  4WFA W;  3CCE W;  4IO9 W;  2ZJP W;  1K73 X;  3CCQ W;  1VQ6 W;  4WFB W;  1MWT A;  1VQQ A;  4BL3 A;  1Q86 X;  3CPW V;  5GAG a;  4YKA A;  1Q81 X;  1BXY A;  3CCJ W;  1YIT W;  5HL7 W;  3CXC V;  1VQK W;  3PIO W;  3OW2 V;  3O1F A;  3GQ0 A;  3ZG5 A;  3O2O A;  5CA3 A;  3CME W;  3ZG0 A;  1YHQ W;  5M19 A;  2OTJ W;  3W7S A;  1RQS A;  1MWR A;  5M18 A;  1MBV B;  3CCM W;  1MWS A;  3I55 W;  3CF5 W;  3PIP W;  3CCU W;  1VQO W;  3G71 W;  1DD4 A;  1LZW A;  4WCE W;  1DD3 A;  1MBX C;  1K9M X;  1VQ5 W;  3W7U A;  4WF9 W;  3G6E W;  5DM7 W;  3DNJ A;  2WA9 A;  3CCL W;  1M1K X;  5GAH a;  3CD6 W;  1MBU C;  1KC8 X;  1M90 X;  3O1F B;  1KD1 X;  2ZJR W;  1RQU A;  5JVH W;  1RQV A;  1VQ7 W;  3G3P A;  3DLL W;  2W9R A;  4CJN A;  1YJN W;  1Q7Y X;  3GQ1 A;  5GAE a;  3ZFZ A;  5GAD a;  3CCS W;  4DKI A;  4UY8 Z;  1KQS V;  3GW1 A;  5M1A A;  4WFN W;  1YJ9 W;  1QVF V;  3W7W A;  1VQM W;  1S72 W;  1YIJ W;  2QA4 W;  1JJ2 V;  1R6O C; 
#chains in the Genus database with same CATH homology
 1R6Q C;  1MBU C;  1RQS A;  3O1F B;  3O2B A;  1RQU A;  1MBV B;  2WA8 A;  3O2H A;  4YJM A;  1RQV A;  1CTF A;  3G3P A;  2W9R A;  1MG9 A;  3G1B A;  3GQ1 A;  1LZW A;  1DD4 A;  1DD3 A;  1MBX C;  3GW1 A;  4YKA A;  3DNJ A;  2WA9 A;  3G19 A;  3O1F A;  3GQ0 A;  4YJX A;  3O2O A;  1R6O C;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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