3PIOW

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
55
structure length
55
Chain Sequence
MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/antibiotic
publication title Crystal structure of the synergistic antibiotic pair, lankamycin and lankacidin, in complex with the large ribosomal subunit.
pubmed doi rcsb
molecule keywords RIBOSOMAL 23S RNA
total genus 11
structure length 55
sequence length 55
ec nomenclature
pdb deposition date 2010-11-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 3pioW00
2QA4W 4IOAW 1K73X 3G6EW 1K8AX 1VQ6W 3PIOW 2ZJRW 3CC2W 1Q81X 3CCJW 4WFAW 1VQ5W 3CCSW 1BXYA 1VQMW 1VQPW 3PIPW 5DM6W 3CD6W 4WCEW 1KQSV 1M90X 1VQLW 3CCVW 1KD1X 3CMAW 5GAEa 2ZJQW 2ZJPW 3CMEW 1W2BV 5JVGW 3CCLW 3CCRW 1KC8X 5HL7W 4IO9W 1YI2W 1K9MX 1VQ4W 3I56W 3CCMW 3CPWV 5GADa 3J7ZZ 1YJ9W 1VQ7W 3CC4W 1VQNW 1YHQW 4WFBW 1VQ9W 3CC7W 1YITW 4UY8Z 3G71W 1YJWW 3G4SW 5JVHW 2OTLW 1Q82X 3CCUW 2OTJW 3OW2V 3CCQW 1VQKW 1YJNW 1N8RX 1M1KX 4WFNW 4U67W 2QEXW 3I55W 5GAHa 1JJ2V 4WF9W 1Q86X 3CCEW 5DM7W 1YIJW 1QVGV 1VQ8W 1QVFV 1Q7YX 5GAGa 1VQOW 4IOCW 3CXCV 1NJIX 3CF5W 1S72W 3DLLW
chains in the Genus database with same CATH superfamily
1RQVA 3O2BA 1RQSA 1VQQA 2QA4W 4IOAW 1K73X 3G6EW 1K8AX 1VQ6W 3PIOW 2ZJRW 3CC2W 1Q81X 1MWUA 3G3PA 3CCJW 3D3IA 5GW7A 4WFAW 1VQ5W 3CCSW 1BXYA 1VQMW 3GW1A 1VQPW 3PIPW 4BL3A 1MWRA 3W7SA 5DM6W 3CD6W 3ZG0A 4WCEW 2WA9A 1KQSV 1MG9A 1M90X 1LZWA 1CTFA 4BL2A 3GQ0A 1VQLW 3CCVW 1MWTA 1KD1X 3CMAW 5GAEa 2WA8A 2ZJQW 2ZJPW 3CMEW 1MWSA 1W2BV 3ZFZA 5JVGW 3W7WA 3CCLW 3CCRW 1KC8X 5HL7W 4IO9W 1YI2W 3DNJA 4YJXA 1K9MX 5CA3A 1VQ4W 5M18A 3I56W 3G19A 3CCMW 2W9RA 4CJNA 3CPWV 5GADa 3ZG5A 3J7ZZ 1YJ9W 1VQ7W 3CC4W 1VQNW 1YHQW 4WFBW 1VQ9W 3CC7W 1YITW 3GQ1A 5M1AA 3G71W 4UY8Z 1DD3A 3O2HA 3W7UA 1YJWW 1MBVB 3G4SW 5JVHW 2OTLW 1Q82X 3CCUW 2OTJW 4YJMA 3OW2V 3G1BA 3CCQW 1VQKW 1RQUA 1YJNW 1MBXC 1N8RX 1M1KX 4WFNW 4U67W 2QEXW 3O1FA 3I55W 5GAHa 1R6OC 1JJ2V 4WF9W 1Q86X 3CCEW 5DM7W 3O1FB 1YIJW 3W7XA 1DD4A 4DKIA 1QVGV 1VQ8W 1QVFV 1Q7YX 5GAGa 1VQOW 4CPKA 4IOCW 3CXCV 1MBUC 1R6QC 1NJIX 3CF5W 3O2OA 1S72W 5M19A 4YKAA 3DLLW 3W7TA
chains in the Genus database with same CATH topology
2QA4W 4IOAW 1K73X 3G6EW 1K8AX 1VQ6W 3PIOW 2ZJRW 3CC2W 1Q81X 3CCJW 4WFAW 1VQ5W 3CCSW 1BXYA 1VQMW 1VQPW 3PIPW 5DM6W 3CD6W 4WCEW 1KQSV 1M90X 1VQLW 3CCVW 1KD1X 3CMAW 5GAEa 2ZJQW 2ZJPW 3CMEW 1W2BV 5JVGW 3CCLW 3CCRW 1KC8X 5HL7W 4IO9W 1YI2W 1K9MX 1VQ4W 3I56W 3CCMW 3CPWV 5GADa 3J7ZZ 1YJ9W 1VQ7W 3CC4W 1VQNW 1YHQW 4WFBW 1VQ9W 3CC7W 1YITW 4UY8Z 3G71W 1YJWW 3G4SW 5JVHW 2OTLW 1Q82X 3CCUW 2OTJW 3OW2V 3CCQW 1VQKW 1YJNW 1N8RX 1M1KX 4WFNW 4U67W 2QEXW 3I55W 5GAHa 1JJ2V 4WF9W 1Q86X 3CCEW 5DM7W 1YIJW 1QVGV 1VQ8W 1QVFV 1Q7YX 5GAGa 1VQOW 4IOCW 3CXCV 1NJIX 3CF5W 1S72W 3DLLW
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QA4 W;  4IOA W;  1K73 X;  3G6E W;  1K8A X;  1VQ6 W;  3PIO W;  2ZJR W;  3CC2 W;  1Q81 X;  3CCJ W;  4WFA W;  1VQ5 W;  3CCS W;  1BXY A;  1VQM W;  1VQP W;  3PIP W;  5DM6 W;  3CD6 W;  4WCE W;  1KQS V;  1M90 X;  1VQL W;  3CCV W;  1KD1 X;  3CMA W;  5GAE a;  2ZJQ W;  2ZJP W;  3CME W;  1W2B V;  5JVG W;  3CCL W;  3CCR W;  1KC8 X;  5HL7 W;  4IO9 W;  1YI2 W;  1K9M X;  1VQ4 W;  3I56 W;  3CCM W;  3CPW V;  5GAD a;  3J7Z Z;  1YJ9 W;  1VQ7 W;  3CC4 W;  1VQN W;  1YHQ W;  4WFB W;  1VQ9 W;  3CC7 W;  1YIT W;  4UY8 Z;  3G71 W;  1YJW W;  3G4S W;  5JVH W;  2OTL W;  1Q82 X;  3CCU W;  2OTJ W;  3OW2 V;  3CCQ W;  1VQK W;  1YJN W;  1N8R X;  1M1K X;  4WFN W;  4U67 W;  2QEX W;  3I55 W;  5GAH a;  1JJ2 V;  4WF9 W;  1Q86 X;  3CCE W;  5DM7 W;  1YIJ W;  1QVG V;  1VQ8 W;  1QVF V;  1Q7Y X;  5GAG a;  1VQO W;  4IOC W;  3CXC V;  1NJI X;  3CF5 W;  1S72 W;  3DLL W; 
#chains in the Genus database with same CATH topology
 1RQV A;  3O2B A;  1RQS A;  1VQQ A;  2QA4 W;  4IOA W;  1K73 X;  3G6E W;  1K8A X;  1VQ6 W;  3PIO W;  2ZJR W;  3CC2 W;  1Q81 X;  1MWU A;  3G3P A;  3CCJ W;  3D3I A;  5GW7 A;  4WFA W;  1VQ5 W;  3CCS W;  1BXY A;  1VQM W;  3GW1 A;  1VQP W;  3PIP W;  4BL3 A;  1MWR A;  3W7S A;  5DM6 W;  3CD6 W;  3ZG0 A;  4WCE W;  2WA9 A;  1KQS V;  1MG9 A;  1M90 X;  1LZW A;  1CTF A;  4BL2 A;  3GQ0 A;  1VQL W;  3CCV W;  1MWT A;  1KD1 X;  3CMA W;  5GAE a;  2WA8 A;  2ZJQ W;  2ZJP W;  3CME W;  1MWS A;  1W2B V;  3ZFZ A;  5JVG W;  3W7W A;  3CCL W;  3CCR W;  1KC8 X;  5HL7 W;  4IO9 W;  1YI2 W;  3DNJ A;  4YJX A;  1K9M X;  5CA3 A;  1VQ4 W;  5M18 A;  3I56 W;  3G19 A;  3CCM W;  2W9R A;  4CJN A;  3CPW V;  5GAD a;  3ZG5 A;  3J7Z Z;  1YJ9 W;  1VQ7 W;  3CC4 W;  1VQN W;  1YHQ W;  4WFB W;  1VQ9 W;  3CC7 W;  1YIT W;  3GQ1 A;  5M1A A;  3G71 W;  4UY8 Z;  1DD3 A;  3O2H A;  3W7U A;  1YJW W;  1MBV B;  3G4S W;  5JVH W;  2OTL W;  1Q82 X;  3CCU W;  2OTJ W;  4YJM A;  3OW2 V;  3G1B A;  3CCQ W;  1VQK W;  1RQU A;  1YJN W;  1MBX C;  1N8R X;  1M1K X;  4WFN W;  4U67 W;  2QEX W;  3O1F A;  3I55 W;  5GAH a;  1R6O C;  1JJ2 V;  4WF9 W;  1Q86 X;  3CCE W;  5DM7 W;  3O1F B;  1YIJ W;  3W7X A;  1DD4 A;  4DKI A;  1QVG V;  1VQ8 W;  1QVF V;  1Q7Y X;  5GAG a;  1VQO W;  4CPK A;  4IOC W;  3CXC V;  1MBU C;  1R6Q C;  1NJI X;  3CF5 W;  3O2O A;  1S72 W;  5M19 A;  4YKA A;  3DLL W;  3W7T A; 
#chains in the Genus database with same CATH homology
 2QA4 W;  4IOA W;  1K73 X;  3G6E W;  1K8A X;  1VQ6 W;  3PIO W;  2ZJR W;  3CC2 W;  1Q81 X;  3CCJ W;  4WFA W;  1VQ5 W;  3CCS W;  1BXY A;  1VQM W;  1VQP W;  3PIP W;  5DM6 W;  3CD6 W;  4WCE W;  1KQS V;  1M90 X;  1VQL W;  3CCV W;  1KD1 X;  3CMA W;  5GAE a;  2ZJQ W;  2ZJP W;  3CME W;  1W2B V;  5JVG W;  3CCL W;  3CCR W;  1KC8 X;  5HL7 W;  4IO9 W;  1YI2 W;  1K9M X;  1VQ4 W;  3I56 W;  3CCM W;  3CPW V;  5GAD a;  3J7Z Z;  1YJ9 W;  1VQ7 W;  3CC4 W;  1VQN W;  1YHQ W;  4WFB W;  1VQ9 W;  3CC7 W;  1YIT W;  4UY8 Z;  3G71 W;  1YJW W;  3G4S W;  5JVH W;  2OTL W;  1Q82 X;  3CCU W;  2OTJ W;  3OW2 V;  3CCQ W;  1VQK W;  1YJN W;  1N8R X;  1M1K X;  4WFN W;  4U67 W;  2QEX W;  3I55 W;  5GAH a;  1JJ2 V;  4WF9 W;  1Q86 X;  3CCE W;  5DM7 W;  1YIJ W;  1QVG V;  1VQ8 W;  1QVF V;  1Q7Y X;  5GAG a;  1VQO W;  4IOC W;  3CXC V;  1NJI X;  3CF5 W;  1S72 W;  3DLL W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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