3VLYA

Assimilatory nitrite reductase (nii3) - n226k mutant - so3 partial complex from tobacco leaf
Total Genus 190

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
538
structure length
538
Chain Sequence
VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWKPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Oxidoreductase
source organism Nicotiana tabacum
publication title X-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity
pubmed doi rcsb
molecule keywords Nitrite reductase
total genus 190
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vlyA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vlyA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3vlyA01
3MM5B 8GEPA 1ZJ8A 3MM7B 3MM9B 4S3DA 3MM6B 2GEPA 3B0JA 3B0LA 3B0HA 4GEPA 3MM8B 5AOPA 3MMBA 3VLYA 3OR2B 4G39A 3MMCB 2XSJB 3MMAA 3OR1B 3VKTA 3VKSA 3NOYA 4S3BA 4S3CA 2V4JB 3B0GA 3MM5A 4G9PA 7GEPA 3B0MA 3AOPA 1ZJ9A 3MM9A 3MM7A 3VM0A 3MM6A 6GEPA 3B0NA 2AKJA 4S38A 5GEPA 3VLZA 3GEOA 3MM8A 3VKRA 4HTRA 3OR2A 4G38A 3MMCA 2XSJA 3OR1A 2AOPA 4S3EA 4S3FA 2V4JA 3VM1A 3MMBB 3MMAB 4S39A 3VKQA 1AOPA 2Y0FA 4S3AA 3VLXA 3VKPA 4S23A 4AOPA
chains in the Genus database with same CATH superfamily
3MM5B 8GEPA 1ZJ8A 3MM7B 3MM9B 4S3DA 3MM6B 2GEPA 3B0JA 3B0LA 3B0HA 4GEPA 3MM8B 5AOPA 3MMBA 3VLYA 3OR2B 4G39A 3MMCB 2XSJB 3MMAA 3OR1B 3VKTA 3VKSA 3NOYA 4S3BA 4S3CA 2V4JB 3B0GA 3MM5A 4G9PA 7GEPA 3B0MA 3AOPA 1ZJ9A 3MM9A 3MM7A 3VM0A 3MM6A 6GEPA 3B0NA 2AKJA 4S38A 5GEPA 3VLZA 3GEOA 3MM8A 3VKRA 4HTRA 3OR2A 4G38A 3MMCA 2XSJA 3OR1A 2AOPA 4S3EA 4S3FA 2V4JA 3VM1A 3MMBB 3MMAB 4S39A 3VKQA 1AOPA 2Y0FA 4S3AA 3VLXA 3VKPA 4S23A 4AOPA
chains in the Genus database with same CATH topology
3MM5B 8GEPA 1ZJ8A 3MM7B 3MM9B 4S3DA 3MM6B 2GEPA 3B0JA 3B0LA 3B0HA 4GEPA 3MM8B 5AOPA 3MMBA 3VLYA 3OR2B 4G39A 3MMCB 2XSJB 3MMAA 3OR1B 3VKTA 3VKSA 3NOYA 4S3BA 4S3CA 2V4JB 3B0GA 3MM5A 4G9PA 7GEPA 3B0MA 3AOPA 1ZJ9A 3MM9A 3MM7A 3VM0A 3MM6A 6GEPA 3B0NA 2AKJA 4S38A 5GEPA 3VLZA 3GEOA 3MM8A 3VKRA 4HTRA 3OR2A 4G38A 3MMCA 2XSJA 3OR1A 2AOPA 4S3EA 4S3FA 2V4JA 3VM1A 3MMBB 3MMAB 4S39A 3VKQA 1AOPA 2Y0FA 4S3AA 3VLXA 3VKPA 4S23A 4AOPA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3MM5 B;  8GEP A;  1ZJ8 A;  3MM7 B;  3MM9 B;  4S3D A;  3MM6 B;  2GEP A;  3B0J A;  3B0L A;  3B0H A;  4GEP A;  3MM8 B;  5AOP A;  3MMB A;  3VLY A;  3OR2 B;  4G39 A;  3MMC B;  2XSJ B;  3MMA A;  3OR1 B;  3VKT A;  3VKS A;  3NOY A;  4S3B A;  4S3C A;  2V4J B;  3B0G A;  3MM5 A;  4G9P A;  7GEP A;  3B0M A;  3AOP A;  1ZJ9 A;  3MM9 A;  3MM7 A;  3VM0 A;  3MM6 A;  6GEP A;  3B0N A;  2AKJ A;  4S38 A;  5GEP A;  3VLZ A;  3GEO A;  3MM8 A;  3VKR A;  4HTR A;  3OR2 A;  4G38 A;  3MMC A;  2XSJ A;  3OR1 A;  2AOP A;  4S3E A;  4S3F A;  2V4J A;  3VM1 A;  3MMB B;  3MMA B;  4S39 A;  3VKQ A;  1AOP A;  2Y0F A;  4S3A A;  3VLX A;  3VKP A;  4S23 A;  4AOP A; 
#chains in the Genus database with same CATH topology
 3MM5 B;  8GEP A;  1ZJ8 A;  3MM7 B;  3MM9 B;  4S3D A;  3MM6 B;  2GEP A;  3B0J A;  3B0L A;  3B0H A;  4GEP A;  3MM8 B;  5AOP A;  3MMB A;  3VLY A;  3OR2 B;  4G39 A;  3MMC B;  2XSJ B;  3MMA A;  3OR1 B;  3VKT A;  3VKS A;  3NOY A;  4S3B A;  4S3C A;  2V4J B;  3B0G A;  3MM5 A;  4G9P A;  7GEP A;  3B0M A;  3AOP A;  1ZJ9 A;  3MM9 A;  3MM7 A;  3VM0 A;  3MM6 A;  6GEP A;  3B0N A;  2AKJ A;  4S38 A;  5GEP A;  3VLZ A;  3GEO A;  3MM8 A;  3VKR A;  4HTR A;  3OR2 A;  4G38 A;  3MMC A;  2XSJ A;  3OR1 A;  2AOP A;  4S3E A;  4S3F A;  2V4J A;  3VM1 A;  3MMB B;  3MMA B;  4S39 A;  3VKQ A;  1AOP A;  2Y0F A;  4S3A A;  3VLX A;  3VKP A;  4S23 A;  4AOP A; 
#chains in the Genus database with same CATH homology
 3MM5 B;  8GEP A;  1ZJ8 A;  3MM7 B;  3MM9 B;  4S3D A;  3MM6 B;  2GEP A;  3B0J A;  3B0L A;  3B0H A;  4GEP A;  3MM8 B;  5AOP A;  3MMB A;  3VLY A;  3OR2 B;  4G39 A;  3MMC B;  2XSJ B;  3MMA A;  3OR1 B;  3VKT A;  3VKS A;  3NOY A;  4S3B A;  4S3C A;  2V4J B;  3B0G A;  3MM5 A;  4G9P A;  7GEP A;  3B0M A;  3AOP A;  1ZJ9 A;  3MM9 A;  3MM7 A;  3VM0 A;  3MM6 A;  6GEP A;  3B0N A;  2AKJ A;  4S38 A;  5GEP A;  3VLZ A;  3GEO A;  3MM8 A;  3VKR A;  4HTR A;  3OR2 A;  4G38 A;  3MMC A;  2XSJ A;  3OR1 A;  2AOP A;  4S3E A;  4S3F A;  2V4J A;  3VM1 A;  3MMB B;  3MMA B;  4S39 A;  3VKQ A;  1AOP A;  2Y0F A;  4S3A A;  3VLX A;  3VKP A;  4S23 A;  4AOP A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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