3VM1A

Assimilatory nitrite reductase (nii3) - n226k mutant - hco3 complex from tobacco leaf
Total Genus 192
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
538
structure length
538
Chain Sequence
VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWKPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title X-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity
pubmed doi rcsb
molecule keywords Nitrite reductase
molecule tags Oxidoreductase
source organism Nicotiana tabacum
total genus 192
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vm1A02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vm1A03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3vm1A01
3VM1A 4AOPA 3OR1A 4G38A 3MMAB 3MM5A 4HTRA 8GEPA 2AOPA 2V4JA 3MM8A 3VM0A 3GEOA 4S39A 3VLZA 5GEPA 1ZJ9A 3MMBA 4G9PA 2XSJB 3NOYA 6GEPA 2AKJA 4S3BA 3OR1B 3MM5B 3VKRA 2V4JB 3OR2A 3B0MA 3MM6A 3B0GA 3MMCA 3VKSA 3VLXA 3VLYA 3MM7A 2GEPA 3MM8B 4S3AA 4S3CA 3B0JA 3VKQA 3VKPA 4S38A 3B0HA 3MM9A 3MMAA 2Y0FA 3MMBB 5AOPA 7GEPA 3B0NA 3B0LA 4GEPA 3VKTA 3AOPA 3OR2B 4S3DA 3MM7B 3MM6B 3MMCB 4S3EA 4S23A 4S3FA 4G39A 2XSJA 1AOPA 3MM9B 1ZJ8A
chains in the Genus database with same CATH superfamily
3VM1A 4AOPA 3OR1A 4G38A 3MMAB 3MM5A 4HTRA 8GEPA 2AOPA 2V4JA 3MM8A 3VM0A 3GEOA 4S39A 3VLZA 5GEPA 1ZJ9A 3MMBA 4G9PA 2XSJB 3NOYA 6GEPA 2AKJA 4S3BA 3OR1B 3MM5B 3VKRA 2V4JB 3OR2A 3B0MA 3MM6A 3B0GA 3MMCA 3VKSA 3VLXA 3VLYA 3MM7A 2GEPA 3MM8B 4S3AA 4S3CA 3B0JA 3VKQA 3VKPA 4S38A 3B0HA 3MM9A 3MMAA 2Y0FA 3MMBB 5AOPA 7GEPA 3B0NA 3B0LA 4GEPA 3VKTA 3AOPA 3OR2B 4S3DA 3MM7B 3MM6B 3MMCB 4S3EA 4S23A 4S3FA 4G39A 2XSJA 1AOPA 3MM9B 1ZJ8A
chains in the Genus database with same CATH topology
3VM1A 4AOPA 3OR1A 4G38A 3MMAB 3MM5A 4HTRA 8GEPA 2AOPA 2V4JA 3MM8A 3VM0A 3GEOA 4S39A 3VLZA 5GEPA 1ZJ9A 3MMBA 4G9PA 2XSJB 3NOYA 6GEPA 2AKJA 4S3BA 3OR1B 3MM5B 3VKRA 2V4JB 3OR2A 3B0MA 3MM6A 3B0GA 3MMCA 3VKSA 3VLXA 3VLYA 3MM7A 2GEPA 3MM8B 4S3AA 4S3CA 3B0JA 3VKQA 3VKPA 4S38A 3B0HA 3MM9A 3MMAA 2Y0FA 3MMBB 5AOPA 7GEPA 3B0NA 3B0LA 4GEPA 3VKTA 3AOPA 3OR2B 4S3DA 3MM7B 3MM6B 3MMCB 4S3EA 4S23A 4S3FA 4G39A 2XSJA 1AOPA 3MM9B 1ZJ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VM1 A;  4AOP A;  3OR1 A;  4G38 A;  3MMA B;  3MM5 A;  4HTR A;  8GEP A;  2AOP A;  2V4J A;  3MM8 A;  3VM0 A;  3GEO A;  4S39 A;  3VLZ A;  5GEP A;  1ZJ9 A;  3MMB A;  4G9P A;  2XSJ B;  3NOY A;  6GEP A;  2AKJ A;  4S3B A;  3OR1 B;  3MM5 B;  3VKR A;  2V4J B;  3OR2 A;  3B0M A;  3MM6 A;  3B0G A;  3MMC A;  3VKS A;  3VLX A;  3VLY A;  3MM7 A;  2GEP A;  3MM8 B;  4S3A A;  4S3C A;  3B0J A;  3VKQ A;  3VKP A;  4S38 A;  3B0H A;  3MM9 A;  3MMA A;  2Y0F A;  3MMB B;  5AOP A;  7GEP A;  3B0N A;  3B0L A;  4GEP A;  3VKT A;  3AOP A;  3OR2 B;  4S3D A;  3MM7 B;  3MM6 B;  3MMC B;  4S3E A;  4S23 A;  4S3F A;  4G39 A;  2XSJ A;  1AOP A;  3MM9 B;  1ZJ8 A; 
#chains in the Genus database with same CATH topology
 3VM1 A;  4AOP A;  3OR1 A;  4G38 A;  3MMA B;  3MM5 A;  4HTR A;  8GEP A;  2AOP A;  2V4J A;  3MM8 A;  3VM0 A;  3GEO A;  4S39 A;  3VLZ A;  5GEP A;  1ZJ9 A;  3MMB A;  4G9P A;  2XSJ B;  3NOY A;  6GEP A;  2AKJ A;  4S3B A;  3OR1 B;  3MM5 B;  3VKR A;  2V4J B;  3OR2 A;  3B0M A;  3MM6 A;  3B0G A;  3MMC A;  3VKS A;  3VLX A;  3VLY A;  3MM7 A;  2GEP A;  3MM8 B;  4S3A A;  4S3C A;  3B0J A;  3VKQ A;  3VKP A;  4S38 A;  3B0H A;  3MM9 A;  3MMA A;  2Y0F A;  3MMB B;  5AOP A;  7GEP A;  3B0N A;  3B0L A;  4GEP A;  3VKT A;  3AOP A;  3OR2 B;  4S3D A;  3MM7 B;  3MM6 B;  3MMC B;  4S3E A;  4S23 A;  4S3F A;  4G39 A;  2XSJ A;  1AOP A;  3MM9 B;  1ZJ8 A; 
#chains in the Genus database with same CATH homology
 3VM1 A;  4AOP A;  3OR1 A;  4G38 A;  3MMA B;  3MM5 A;  4HTR A;  8GEP A;  2AOP A;  2V4J A;  3MM8 A;  3VM0 A;  3GEO A;  4S39 A;  3VLZ A;  5GEP A;  1ZJ9 A;  3MMB A;  4G9P A;  2XSJ B;  3NOY A;  6GEP A;  2AKJ A;  4S3B A;  3OR1 B;  3MM5 B;  3VKR A;  2V4J B;  3OR2 A;  3B0M A;  3MM6 A;  3B0G A;  3MMC A;  3VKS A;  3VLX A;  3VLY A;  3MM7 A;  2GEP A;  3MM8 B;  4S3A A;  4S3C A;  3B0J A;  3VKQ A;  3VKP A;  4S38 A;  3B0H A;  3MM9 A;  3MMA A;  2Y0F A;  3MMB B;  5AOP A;  7GEP A;  3B0N A;  3B0L A;  4GEP A;  3VKT A;  3AOP A;  3OR2 B;  4S3D A;  3MM7 B;  3MM6 B;  3MMC B;  4S3E A;  4S23 A;  4S3F A;  4G39 A;  2XSJ A;  1AOP A;  3MM9 B;  1ZJ8 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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