3VM1A

Assimilatory nitrite reductase (nii3) - n226k mutant - hco3 complex from tobacco leaf
Total Genus 192

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
538
structure length
538
Chain Sequence
VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWKPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title X-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity
pubmed doi rcsb
molecule keywords Nitrite reductase
molecule tags Oxidoreductase
source organism Nicotiana tabacum
total genus 192
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vm1A02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vm1A03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3vm1A01
3VKPA 2V4JA 3MM7A 8GEPA 2XSJB 4GEPA 1AOPA 3B0MA 3MMCA 3VKRA 4G9PA 3VM0A 3B0LA 3MM9B 4S3BA 4AOPA 3MM8A 3VLZA 4S3DA 7GEPA 3MM5B 4S23A 2GEPA 2Y0FA 3MM6A 4HTRA 3OR1A 3MMBB 3OR2B 3VLXA 2XSJA 3OR1B 3B0HA 3MMAB 3VKSA 3AOPA 3B0JA 3MM6B 3GEOA 2AOPA 3MM7B 1ZJ8A 4G38A 4G39A 4S3AA 2V4JB 3MM9A 4S3EA 4S39A 4S38A 3VKQA 3VKTA 3VM1A 3MMCB 3NOYA 5AOPA 3MM5A 6GEPA 3MM8B 2AKJA 3MMBA 1ZJ9A 4S3CA 3OR2A 3MMAA 5GEPA 4S3FA 3VLYA 3B0NA 3B0GA
chains in the Genus database with same CATH superfamily
3VKPA 2V4JA 3MM7A 8GEPA 2XSJB 4GEPA 1AOPA 3B0MA 3MMCA 3VKRA 4G9PA 3VM0A 3B0LA 3MM9B 4S3BA 4AOPA 3MM8A 3VLZA 4S3DA 7GEPA 3MM5B 4S23A 2GEPA 2Y0FA 3MM6A 4HTRA 3OR1A 3MMBB 3OR2B 3VLXA 2XSJA 3OR1B 3B0HA 3MMAB 3VKSA 3AOPA 3B0JA 3MM6B 3GEOA 2AOPA 3MM7B 1ZJ8A 4G38A 4G39A 4S3AA 2V4JB 3MM9A 4S3EA 4S39A 4S38A 3VKQA 3VKTA 3VM1A 3MMCB 3NOYA 5AOPA 3MM5A 6GEPA 3MM8B 2AKJA 3MMBA 1ZJ9A 4S3CA 3OR2A 3MMAA 5GEPA 4S3FA 3VLYA 3B0NA 3B0GA
chains in the Genus database with same CATH topology
3VKPA 2V4JA 3MM7A 8GEPA 2XSJB 4GEPA 1AOPA 3B0MA 3MMCA 3VKRA 4G9PA 3VM0A 3B0LA 3MM9B 4S3BA 4AOPA 3MM8A 3VLZA 4S3DA 7GEPA 3MM5B 4S23A 2GEPA 2Y0FA 3MM6A 4HTRA 3OR1A 3MMBB 3OR2B 3VLXA 2XSJA 3OR1B 3B0HA 3MMAB 3VKSA 3AOPA 3B0JA 3MM6B 3GEOA 2AOPA 3MM7B 1ZJ8A 4G38A 4G39A 4S3AA 2V4JB 3MM9A 4S3EA 4S39A 4S38A 3VKQA 3VKTA 3VM1A 3MMCB 3NOYA 5AOPA 3MM5A 6GEPA 3MM8B 2AKJA 3MMBA 1ZJ9A 4S3CA 3OR2A 3MMAA 5GEPA 4S3FA 3VLYA 3B0NA 3B0GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VKP A;  2V4J A;  3MM7 A;  8GEP A;  2XSJ B;  4GEP A;  1AOP A;  3B0M A;  3MMC A;  3VKR A;  4G9P A;  3VM0 A;  3B0L A;  3MM9 B;  4S3B A;  4AOP A;  3MM8 A;  3VLZ A;  4S3D A;  7GEP A;  3MM5 B;  4S23 A;  2GEP A;  2Y0F A;  3MM6 A;  4HTR A;  3OR1 A;  3MMB B;  3OR2 B;  3VLX A;  2XSJ A;  3OR1 B;  3B0H A;  3MMA B;  3VKS A;  3AOP A;  3B0J A;  3MM6 B;  3GEO A;  2AOP A;  3MM7 B;  1ZJ8 A;  4G38 A;  4G39 A;  4S3A A;  2V4J B;  3MM9 A;  4S3E A;  4S39 A;  4S38 A;  3VKQ A;  3VKT A;  3VM1 A;  3MMC B;  3NOY A;  5AOP A;  3MM5 A;  6GEP A;  3MM8 B;  2AKJ A;  3MMB A;  1ZJ9 A;  4S3C A;  3OR2 A;  3MMA A;  5GEP A;  4S3F A;  3VLY A;  3B0N A;  3B0G A; 
#chains in the Genus database with same CATH topology
 3VKP A;  2V4J A;  3MM7 A;  8GEP A;  2XSJ B;  4GEP A;  1AOP A;  3B0M A;  3MMC A;  3VKR A;  4G9P A;  3VM0 A;  3B0L A;  3MM9 B;  4S3B A;  4AOP A;  3MM8 A;  3VLZ A;  4S3D A;  7GEP A;  3MM5 B;  4S23 A;  2GEP A;  2Y0F A;  3MM6 A;  4HTR A;  3OR1 A;  3MMB B;  3OR2 B;  3VLX A;  2XSJ A;  3OR1 B;  3B0H A;  3MMA B;  3VKS A;  3AOP A;  3B0J A;  3MM6 B;  3GEO A;  2AOP A;  3MM7 B;  1ZJ8 A;  4G38 A;  4G39 A;  4S3A A;  2V4J B;  3MM9 A;  4S3E A;  4S39 A;  4S38 A;  3VKQ A;  3VKT A;  3VM1 A;  3MMC B;  3NOY A;  5AOP A;  3MM5 A;  6GEP A;  3MM8 B;  2AKJ A;  3MMB A;  1ZJ9 A;  4S3C A;  3OR2 A;  3MMA A;  5GEP A;  4S3F A;  3VLY A;  3B0N A;  3B0G A; 
#chains in the Genus database with same CATH homology
 3VKP A;  2V4J A;  3MM7 A;  8GEP A;  2XSJ B;  4GEP A;  1AOP A;  3B0M A;  3MMC A;  3VKR A;  4G9P A;  3VM0 A;  3B0L A;  3MM9 B;  4S3B A;  4AOP A;  3MM8 A;  3VLZ A;  4S3D A;  7GEP A;  3MM5 B;  4S23 A;  2GEP A;  2Y0F A;  3MM6 A;  4HTR A;  3OR1 A;  3MMB B;  3OR2 B;  3VLX A;  2XSJ A;  3OR1 B;  3B0H A;  3MMA B;  3VKS A;  3AOP A;  3B0J A;  3MM6 B;  3GEO A;  2AOP A;  3MM7 B;  1ZJ8 A;  4G38 A;  4G39 A;  4S3A A;  2V4J B;  3MM9 A;  4S3E A;  4S39 A;  4S38 A;  3VKQ A;  3VKT A;  3VM1 A;  3MMC B;  3NOY A;  5AOP A;  3MM5 A;  6GEP A;  3MM8 B;  2AKJ A;  3MMB A;  1ZJ9 A;  4S3C A;  3OR2 A;  3MMA A;  5GEP A;  4S3F A;  3VLY A;  3B0N A;  3B0G A; 
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similar chains in the pdb database (?% sequence similarity)

 
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