4G38A

Mutational analysis of sulfite reductase hemoprotein reveals the mechanism for coordinated electron and proton transfer
Total Genus 161
50100150200250300350400020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
490
structure length
449
Chain Sequence
LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILPVHQMLHSVGLDALATAWDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
50100150200250300350400400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV5 (241-244)TVIa1 (222-225)AH1 (93-106)TII1 (86-89)AH3 (167-181)TI2 (115-118)TIV1 (122-125)TI1 (107-110)S16 (389-393)S3 (112-115)S7 (216-221)TII'1 (352-355)3H4 (363-365)S4 (119-122)S6 (152-157)AH2 (132-139)TVIII1 (161-164)S12 (355-360)S5 (143-144)TIV2 (146-149)TI3 (147-150)S15 (373-374)3H6 (448-450)S10 (272-278)S13 (366-367)S8 (235-241)TIV4 (223-226)AH4 (282-296)TI4 (226-229)TVIII2 (233-236)TI'2 (242-245)AH5 (307-314)AH6 (316-327)S9 (246-253)TII2 (260-263)TI5 (263-266)3H3 (279-281)TIV6 (297-305)AH7 (375-385)S17 (397-404)S11 (347-350)TI7 (419-422)TII3 (370-373)S14 (369-370)AH9 (426-430)TI6 (393-396)S18 (431-433)S1 (84-85)TIV3 (158-161)3H1 (164-166)3H2 (230-232)TVIa2 (436-439)AH8 (408-418)S2 (90-92)3H5 (405-407)TI9 (440-443)Updating...
connected with : NaN
publication title Mutational analysis of sulfite reductase hemoprotein reveals the mechanism for coordinated electron and proton transfer.
pubmed doi rcsb
molecule keywords Sulfite reductase [NADPH] hemoprotein beta-component
molecule tags Oxidoreductase
source organism Escherichia coli
total genus 161
structure length 449
sequence length 490
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 2012-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4g38A02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4g38A03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 4g38A01
3OR2A 1ZJ9A 3OR1A 4S3EA 2XSJB 3MM5B 2GEPA 3MMBA 4S3BA 5GEPA 3B0GA 3B0HA 3MMAA 4G9PA 3GEOA 4AOPA 3AOPA 3MM8A 3MMCA 3VKRA 3MM7B 3VLXA 2XSJA 5AOPA 4G38A 2V4JB 3MM5A 2AOPA 3VKPA 3VKTA 6GEPA 1ZJ8A 3MM6B 3MM9B 4GEPA 4S3CA 4S3FA 3B0NA 4S3DA 3VKQA 7GEPA 3B0LA 3B0JA 3MM7A 3OR2B 3NOYA 8GEPA 3VLZA 3OR1B 3VM1A 3VKSA 2V4JA 4G39A 4S38A 3MMBB 4HTRA 4S39A 3MM6A 3MM9A 3MMAB 4S3AA 4S23A 3VLYA 2AKJA 3VM0A 1AOPA 3MM8B 3MMCB 2Y0FA 3B0MA
chains in the Genus database with same CATH superfamily
3OR2A 1ZJ9A 3OR1A 4S3EA 2XSJB 3MM5B 2GEPA 3MMBA 4S3BA 5GEPA 3B0GA 3B0HA 3MMAA 4G9PA 3GEOA 4AOPA 3AOPA 3MM8A 3MMCA 3VKRA 3MM7B 3VLXA 2XSJA 5AOPA 4G38A 2V4JB 3MM5A 2AOPA 3VKPA 3VKTA 6GEPA 1ZJ8A 3MM6B 3MM9B 4GEPA 4S3CA 4S3FA 3B0NA 4S3DA 3VKQA 7GEPA 3B0LA 3B0JA 3MM7A 3OR2B 3NOYA 8GEPA 3VLZA 3OR1B 3VM1A 3VKSA 2V4JA 4G39A 4S38A 3MMBB 4HTRA 4S39A 3MM6A 3MM9A 3MMAB 4S3AA 4S23A 3VLYA 2AKJA 3VM0A 1AOPA 3MM8B 3MMCB 2Y0FA 3B0MA
chains in the Genus database with same CATH topology
3OR2A 1ZJ9A 3OR1A 4S3EA 2XSJB 3MM5B 2GEPA 3MMBA 4S3BA 5GEPA 3B0GA 3B0HA 3MMAA 4G9PA 3GEOA 4AOPA 3AOPA 3MM8A 3MMCA 3VKRA 3MM7B 3VLXA 2XSJA 5AOPA 4G38A 2V4JB 3MM5A 2AOPA 3VKPA 3VKTA 6GEPA 1ZJ8A 3MM6B 3MM9B 4GEPA 4S3CA 4S3FA 3B0NA 4S3DA 3VKQA 7GEPA 3B0LA 3B0JA 3MM7A 3OR2B 3NOYA 8GEPA 3VLZA 3OR1B 3VM1A 3VKSA 2V4JA 4G39A 4S38A 3MMBB 4HTRA 4S39A 3MM6A 3MM9A 3MMAB 4S3AA 4S23A 3VLYA 2AKJA 3VM0A 1AOPA 3MM8B 3MMCB 2Y0FA 3B0MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OR2 A;  1ZJ9 A;  3OR1 A;  4S3E A;  2XSJ B;  3MM5 B;  2GEP A;  3MMB A;  4S3B A;  5GEP A;  3B0G A;  3B0H A;  3MMA A;  4G9P A;  3GEO A;  4AOP A;  3AOP A;  3MM8 A;  3MMC A;  3VKR A;  3MM7 B;  3VLX A;  2XSJ A;  5AOP A;  4G38 A;  2V4J B;  3MM5 A;  2AOP A;  3VKP A;  3VKT A;  6GEP A;  1ZJ8 A;  3MM6 B;  3MM9 B;  4GEP A;  4S3C A;  4S3F A;  3B0N A;  4S3D A;  3VKQ A;  7GEP A;  3B0L A;  3B0J A;  3MM7 A;  3OR2 B;  3NOY A;  8GEP A;  3VLZ A;  3OR1 B;  3VM1 A;  3VKS A;  2V4J A;  4G39 A;  4S38 A;  3MMB B;  4HTR A;  4S39 A;  3MM6 A;  3MM9 A;  3MMA B;  4S3A A;  4S23 A;  3VLY A;  2AKJ A;  3VM0 A;  1AOP A;  3MM8 B;  3MMC B;  2Y0F A;  3B0M A; 
#chains in the Genus database with same CATH topology
 3OR2 A;  1ZJ9 A;  3OR1 A;  4S3E A;  2XSJ B;  3MM5 B;  2GEP A;  3MMB A;  4S3B A;  5GEP A;  3B0G A;  3B0H A;  3MMA A;  4G9P A;  3GEO A;  4AOP A;  3AOP A;  3MM8 A;  3MMC A;  3VKR A;  3MM7 B;  3VLX A;  2XSJ A;  5AOP A;  4G38 A;  2V4J B;  3MM5 A;  2AOP A;  3VKP A;  3VKT A;  6GEP A;  1ZJ8 A;  3MM6 B;  3MM9 B;  4GEP A;  4S3C A;  4S3F A;  3B0N A;  4S3D A;  3VKQ A;  7GEP A;  3B0L A;  3B0J A;  3MM7 A;  3OR2 B;  3NOY A;  8GEP A;  3VLZ A;  3OR1 B;  3VM1 A;  3VKS A;  2V4J A;  4G39 A;  4S38 A;  3MMB B;  4HTR A;  4S39 A;  3MM6 A;  3MM9 A;  3MMA B;  4S3A A;  4S23 A;  3VLY A;  2AKJ A;  3VM0 A;  1AOP A;  3MM8 B;  3MMC B;  2Y0F A;  3B0M A; 
#chains in the Genus database with same CATH homology
 3OR2 A;  1ZJ9 A;  3OR1 A;  4S3E A;  2XSJ B;  3MM5 B;  2GEP A;  3MMB A;  4S3B A;  5GEP A;  3B0G A;  3B0H A;  3MMA A;  4G9P A;  3GEO A;  4AOP A;  3AOP A;  3MM8 A;  3MMC A;  3VKR A;  3MM7 B;  3VLX A;  2XSJ A;  5AOP A;  4G38 A;  2V4J B;  3MM5 A;  2AOP A;  3VKP A;  3VKT A;  6GEP A;  1ZJ8 A;  3MM6 B;  3MM9 B;  4GEP A;  4S3C A;  4S3F A;  3B0N A;  4S3D A;  3VKQ A;  7GEP A;  3B0L A;  3B0J A;  3MM7 A;  3OR2 B;  3NOY A;  8GEP A;  3VLZ A;  3OR1 B;  3VM1 A;  3VKS A;  2V4J A;  4G39 A;  4S38 A;  3MMB B;  4HTR A;  4S39 A;  3MM6 A;  3MM9 A;  3MMA B;  4S3A A;  4S23 A;  3VLY A;  2AKJ A;  3VM0 A;  1AOP A;  3MM8 B;  3MMC B;  2Y0F A;  3B0M A; 
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