4UY8Z

Molecular basis for the ribosome functioning as a l-tryptophan sensor - cryo-em structure of a tnac stalled e.coli ribosome
Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
58
structure length
58
Chain Sequence
AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYS2 (35-37)AH1 (17-26)TI1 (12-15)TIV1 (30-33)3H1 (51-53)S1 (4-7)S3 (55-57)O1 (8-10)AH2 (41-50)Updating...
connected with : NaN
molecule tags Ribosome
publication title Molecular Basis for the Ribosome Functioning as an L-Tryptophan Sensor.
pubmed doi rcsb
molecule keywords 50S RIBOSOMAL PROTEIN L32
total genus 15
structure length 58
sequence length 58
ec nomenclature
pdb deposition date 2014-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
Z PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 4uy8Z00
1N8RX 3CCJW 3CCQW 2ZJPW 1VQKW 1KQSV 4WFAW 3CCVW 2QEXW 1S72W 1VQ4W 5JVGW 1BXYA 1Q86X 5DM6W 1Q7YX 1Q82X 1YJNW 1VQ5W 3CD6W 1VQLW 3I55W 4IOAW 1W2BV 1VQ8W 4WFNW 3CCSW 1JJ2V 1K9MX 4WFBW 3CC4W 1YI2W 4WCEW 3CCUW 1QVGV 1YJ9W 5JVHW 3PIPW 4U67W 3CMEW 1YITW 3CC7W 3CF5W 3CC2W 5GADa 1VQMW 3J7ZZ 3PIOW 3CCLW 3G4SW 4IOCW 5DM7W 1Q81X 1NJIX 3OW2V 3CCRW 1KC8X 3CCEW 1VQ6W 1VQNW 3G6EW 2QA4W 5GAGa 1VQOW 2OTLW 3I56W 1M1KX 5GAHa 1YIJW 3CPWV 4WF9W 1QVFV 1K8AX 1VQ9W 3G71W 1VQPW 1YHQW 1M90X 1K73X 3DLLW 3CCMW 2ZJRW 5HL7W 2ZJQW 1VQ7W 3CMAW 1KD1X 4IO9W 4UY8Z 3CXCV 1YJWW 2OTJW 5GAEa
chains in the Genus database with same CATH superfamily
3DNJA 1RQSA 1RQUA 1N8RX 5CA3A 3O2HA 3W7TA 3CCJW 3CCQW 2ZJPW 1VQKW 1KQSV 4WFAW 3CCVW 1DD4A 2QEXW 1MBVB 1S72W 1VQ4W 5JVGW 1BXYA 1Q86X 5M19A 3W7SA 5DM6W 1MWUA 1Q7YX 1Q82X 1YJNW 1VQ5W 3CD6W 1VQLW 1DD3A 3I55W 1W2BV 4IOAW 3O1FA 2WA9A 1VQ8W 4WFNW 4CJNA 3CCSW 3O2OA 1JJ2V 1R6QC 1MWTA 1K9MX 4WFBW 4YKAA 3CC4W 1YI2W 4WCEW 3CCUW 1QVGV 1YJ9W 5JVHW 3W7WA 3PIPW 4U67W 3CMEW 1YITW 3G1BA 3CF5W 3ZG5A 3CC7W 3CC2W 5GADa 1VQMW 3J7ZZ 3PIOW 3CCLW 3G4SW 4IOCW 5DM7W 1Q81X 1MBXC 1VQQA 2W9RA 5M18A 1NJIX 3OW2V 4CPKA 3CCRW 1KC8X 3CCEW 1VQ6W 1VQNW 3G6EW 3G3PA 5M1AA 2QA4W 5GAGa 1VQOW 1MBUC 3W7XA 2OTLW 4BL3A 4BL2A 3I56W 1M1KX 4YJXA 1MWSA 5GAHa 1MWRA 1YIJW 1R6OC 3D3IA 3CPWV 4WF9W 1QVFV 1K8AX 3W7UA 1RQVA 1VQ9W 3G71W 1CTFA 3GQ0A 1VQPW 1YHQW 1M90X 1K73X 3DLLW 3CCMW 5GW7A 2ZJRW 1MG9A 4DKIA 5HL7W 3O1FB 2ZJQW 1VQ7W 3G19A 3CMAW 3ZG0A 4YJMA 1KD1X 3GW1A 4IO9W 2WA8A 4UY8Z 3O2BA 3GQ1A 3CXCV 1YJWW 2OTJW 3ZFZA 1LZWA 5GAEa
chains in the Genus database with same CATH topology
1N8RX 3CCJW 3CCQW 2ZJPW 1VQKW 1KQSV 4WFAW 3CCVW 2QEXW 1S72W 1VQ4W 5JVGW 1BXYA 1Q86X 5DM6W 1Q7YX 1Q82X 1YJNW 1VQ5W 3CD6W 1VQLW 3I55W 4IOAW 1W2BV 1VQ8W 4WFNW 3CCSW 1JJ2V 1K9MX 4WFBW 3CC4W 1YI2W 4WCEW 3CCUW 1QVGV 1YJ9W 5JVHW 3PIPW 4U67W 3CMEW 1YITW 3CC7W 3CF5W 3CC2W 5GADa 1VQMW 3J7ZZ 3PIOW 3CCLW 3G4SW 4IOCW 5DM7W 1Q81X 1NJIX 3OW2V 3CCRW 1KC8X 3CCEW 1VQ6W 1VQNW 3G6EW 2QA4W 5GAGa 1VQOW 2OTLW 3I56W 1M1KX 5GAHa 1YIJW 3CPWV 4WF9W 1QVFV 1K8AX 1VQ9W 3G71W 1VQPW 1YHQW 1M90X 1K73X 3DLLW 3CCMW 2ZJRW 5HL7W 2ZJQW 1VQ7W 3CMAW 1KD1X 4IO9W 4UY8Z 3CXCV 1YJWW 2OTJW 5GAEa
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1N8R X;  3CCJ W;  3CCQ W;  2ZJP W;  1VQK W;  1KQS V;  4WFA W;  3CCV W;  2QEX W;  1S72 W;  1VQ4 W;  5JVG W;  1BXY A;  1Q86 X;  5DM6 W;  1Q7Y X;  1Q82 X;  1YJN W;  1VQ5 W;  3CD6 W;  1VQL W;  3I55 W;  4IOA W;  1W2B V;  1VQ8 W;  4WFN W;  3CCS W;  1JJ2 V;  1K9M X;  4WFB W;  3CC4 W;  1YI2 W;  4WCE W;  3CCU W;  1QVG V;  1YJ9 W;  5JVH W;  3PIP W;  4U67 W;  3CME W;  1YIT W;  3CC7 W;  3CF5 W;  3CC2 W;  5GAD a;  1VQM W;  3J7Z Z;  3PIO W;  3CCL W;  3G4S W;  4IOC W;  5DM7 W;  1Q81 X;  1NJI X;  3OW2 V;  3CCR W;  1KC8 X;  3CCE W;  1VQ6 W;  1VQN W;  3G6E W;  2QA4 W;  5GAG a;  1VQO W;  2OTL W;  3I56 W;  1M1K X;  5GAH a;  1YIJ W;  3CPW V;  4WF9 W;  1QVF V;  1K8A X;  1VQ9 W;  3G71 W;  1VQP W;  1YHQ W;  1M90 X;  1K73 X;  3DLL W;  3CCM W;  2ZJR W;  5HL7 W;  2ZJQ W;  1VQ7 W;  3CMA W;  1KD1 X;  4IO9 W;  4UY8 Z;  3CXC V;  1YJW W;  2OTJ W;  5GAE a; 
#chains in the Genus database with same CATH topology
 3DNJ A;  1RQS A;  1RQU A;  1N8R X;  5CA3 A;  3O2H A;  3W7T A;  3CCJ W;  3CCQ W;  2ZJP W;  1VQK W;  1KQS V;  4WFA W;  3CCV W;  1DD4 A;  2QEX W;  1MBV B;  1S72 W;  1VQ4 W;  5JVG W;  1BXY A;  1Q86 X;  5M19 A;  3W7S A;  5DM6 W;  1MWU A;  1Q7Y X;  1Q82 X;  1YJN W;  1VQ5 W;  3CD6 W;  1VQL W;  1DD3 A;  3I55 W;  1W2B V;  4IOA W;  3O1F A;  2WA9 A;  1VQ8 W;  4WFN W;  4CJN A;  3CCS W;  3O2O A;  1JJ2 V;  1R6Q C;  1MWT A;  1K9M X;  4WFB W;  4YKA A;  3CC4 W;  1YI2 W;  4WCE W;  3CCU W;  1QVG V;  1YJ9 W;  5JVH W;  3W7W A;  3PIP W;  4U67 W;  3CME W;  1YIT W;  3G1B A;  3CF5 W;  3ZG5 A;  3CC7 W;  3CC2 W;  5GAD a;  1VQM W;  3J7Z Z;  3PIO W;  3CCL W;  3G4S W;  4IOC W;  5DM7 W;  1Q81 X;  1MBX C;  1VQQ A;  2W9R A;  5M18 A;  1NJI X;  3OW2 V;  4CPK A;  3CCR W;  1KC8 X;  3CCE W;  1VQ6 W;  1VQN W;  3G6E W;  3G3P A;  5M1A A;  2QA4 W;  5GAG a;  1VQO W;  1MBU C;  3W7X A;  2OTL W;  4BL3 A;  4BL2 A;  3I56 W;  1M1K X;  4YJX A;  1MWS A;  5GAH a;  1MWR A;  1YIJ W;  1R6O C;  3D3I A;  3CPW V;  4WF9 W;  1QVF V;  1K8A X;  3W7U A;  1RQV A;  1VQ9 W;  3G71 W;  1CTF A;  3GQ0 A;  1VQP W;  1YHQ W;  1M90 X;  1K73 X;  3DLL W;  3CCM W;  5GW7 A;  2ZJR W;  1MG9 A;  4DKI A;  5HL7 W;  3O1F B;  2ZJQ W;  1VQ7 W;  3G19 A;  3CMA W;  3ZG0 A;  4YJM A;  1KD1 X;  3GW1 A;  4IO9 W;  2WA8 A;  4UY8 Z;  3O2B A;  3GQ1 A;  3CXC V;  1YJW W;  2OTJ W;  3ZFZ A;  1LZW A;  5GAE a; 
#chains in the Genus database with same CATH homology
 1N8R X;  3CCJ W;  3CCQ W;  2ZJP W;  1VQK W;  1KQS V;  4WFA W;  3CCV W;  2QEX W;  1S72 W;  1VQ4 W;  5JVG W;  1BXY A;  1Q86 X;  5DM6 W;  1Q7Y X;  1Q82 X;  1YJN W;  1VQ5 W;  3CD6 W;  1VQL W;  3I55 W;  4IOA W;  1W2B V;  1VQ8 W;  4WFN W;  3CCS W;  1JJ2 V;  1K9M X;  4WFB W;  3CC4 W;  1YI2 W;  4WCE W;  3CCU W;  1QVG V;  1YJ9 W;  5JVH W;  3PIP W;  4U67 W;  3CME W;  1YIT W;  3CC7 W;  3CF5 W;  3CC2 W;  5GAD a;  1VQM W;  3J7Z Z;  3PIO W;  3CCL W;  3G4S W;  4IOC W;  5DM7 W;  1Q81 X;  1NJI X;  3OW2 V;  3CCR W;  1KC8 X;  3CCE W;  1VQ6 W;  1VQN W;  3G6E W;  2QA4 W;  5GAG a;  1VQO W;  2OTL W;  3I56 W;  1M1K X;  5GAH a;  1YIJ W;  3CPW V;  4WF9 W;  1QVF V;  1K8A X;  1VQ9 W;  3G71 W;  1VQP W;  1YHQ W;  1M90 X;  1K73 X;  3DLL W;  3CCM W;  2ZJR W;  5HL7 W;  2ZJQ W;  1VQ7 W;  3CMA W;  1KD1 X;  4IO9 W;  4UY8 Z;  3CXC V;  1YJW W;  2OTJ W;  5GAE a;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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