4WCEW

The crystal structure of the large ribosomal subunit of staphylococcus aureus
Total Genus 14
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
58
structure length
58
Chain Sequence
MAKLQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVEE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 23S rRNA
total genus 14
structure length 58
sequence length 58
ec nomenclature
pdb deposition date 2014-09-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 4wceW00
1Q7YX 1KD1X 3CCMW 1K9MX 2QEXW 1YI2W 1YIJW 3G6EW 4WF9W 3J7ZZ 3CCQW 5GADa 1KQSV 3CMAW 1QVGV 3PIOW 5GAGa 3CCLW 1VQ4W 1VQPW 5GAHa 3CCJW 1Q82X 2ZJPW 2ZJRW 1M90X 1VQNW 4IOCW 5HL7W 1VQMW 1VQ7W 4WFNW 4IOAW 1BXYA 1M1KX 3OW2V 3CC4W 3G71W 1Q86X 1VQOW 1VQ5W 5JVGW 2OTLW 3DLLW 4IO9W 3CCVW 3CPWV 1YJNW 1VQ8W 5DM6W 1KC8X 1VQKW 1VQ9W 1W2BV 2OTJW 1Q81X 2ZJQW 3G4SW 3I55W 1N8RX 3CCEW 1QVFV 3CC7W 4WCEW 4UY8Z 3CD6W 5GAEa 3CCUW 1JJ2V 1S72W 1K8AX 3CF5W 3CXCV 3I56W 3CCSW 1VQ6W 3CMEW 5DM7W 1YJWW 1VQLW 4WFAW 3CC2W 5JVHW 4U67W 1YITW 3PIPW 1NJIX 3CCRW 1YJ9W 2QA4W 4WFBW 1YHQW 1K73X
chains in the Genus database with same CATH superfamily
1Q7YX 3O2HA 3O1FA 1MWUA 1R6QC 1KD1X 3CCMW 1K9MX 3G3PA 2QEXW 1YI2W 1YIJW 3G6EW 4CJNA 1RQVA 3O2BA 4WF9W 3J7ZZ 3CCQW 5GADa 4YKAA 1KQSV 5GW7A 3CMAW 1QVGV 3PIOW 5GAGa 3CCLW 1VQ4W 3GW1A 1VQPW 2W9RA 1MWRA 5GAHa 3CCJW 3O1FB 4YJXA 1Q82X 3W7TA 4CPKA 4BL2A 2ZJPW 2ZJRW 1MBUC 1M90X 2WA9A 1VQNW 4IOCW 5HL7W 3GQ1A 1MBXC 1VQMW 1VQ7W 4WFNW 4BL3A 4IOAW 5M1AA 1MWTA 3G19A 1BXYA 1M1KX 3OW2V 3CC4W 3G71W 1Q86X 3W7SA 1VQOW 1VQ5W 5JVGW 2OTLW 3DLLW 4IO9W 1MBVB 1R6OC 3CCVW 3CPWV 1YJNW 3W7XA 3GQ0A 1MG9A 1VQ8W 5CA3A 3ZG5A 4DKIA 1DD4A 5DM6W 1KC8X 1VQKW 1VQ9W 3DNJA 3ZG0A 2WA8A 3ZFZA 1W2BV 2OTJW 1Q81X 2ZJQW 3G4SW 1MWSA 3I55W 1N8RX 3CCEW 1QVFV 5M18A 3CC7W 4WCEW 4UY8Z 3CD6W 3D3IA 5GAEa 3CCUW 1JJ2V 1S72W 1K8AX 3CF5W 1DD3A 3CXCV 3I56W 3CCSW 1VQ6W 1VQQA 3CMEW 4YJMA 5DM7W 1YJWW 3G1BA 1VQLW 5M19A 4WFAW 3CC2W 3W7WA 3W7UA 3O2OA 5JVHW 4U67W 1YITW 1LZWA 3PIPW 1RQUA 1NJIX 3CCRW 1CTFA 1YJ9W 2QA4W 4WFBW 1YHQW 1RQSA 1K73X
chains in the Genus database with same CATH topology
1Q7YX 1KD1X 3CCMW 1K9MX 2QEXW 1YI2W 1YIJW 3G6EW 4WF9W 3J7ZZ 3CCQW 5GADa 1KQSV 3CMAW 1QVGV 3PIOW 5GAGa 3CCLW 1VQ4W 1VQPW 5GAHa 3CCJW 1Q82X 2ZJPW 2ZJRW 1M90X 1VQNW 4IOCW 5HL7W 1VQMW 1VQ7W 4WFNW 4IOAW 1BXYA 1M1KX 3OW2V 3CC4W 3G71W 1Q86X 1VQOW 1VQ5W 5JVGW 2OTLW 3DLLW 4IO9W 3CCVW 3CPWV 1YJNW 1VQ8W 5DM6W 1KC8X 1VQKW 1VQ9W 1W2BV 2OTJW 1Q81X 2ZJQW 3G4SW 3I55W 1N8RX 3CCEW 1QVFV 3CC7W 4WCEW 4UY8Z 3CD6W 5GAEa 3CCUW 1JJ2V 1S72W 1K8AX 3CF5W 3CXCV 3I56W 3CCSW 1VQ6W 3CMEW 5DM7W 1YJWW 1VQLW 4WFAW 3CC2W 5JVHW 4U67W 1YITW 3PIPW 1NJIX 3CCRW 1YJ9W 2QA4W 4WFBW 1YHQW 1K73X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q7Y X;  1KD1 X;  3CCM W;  1K9M X;  2QEX W;  1YI2 W;  1YIJ W;  3G6E W;  4WF9 W;  3J7Z Z;  3CCQ W;  5GAD a;  1KQS V;  3CMA W;  1QVG V;  3PIO W;  5GAG a;  3CCL W;  1VQ4 W;  1VQP W;  5GAH a;  3CCJ W;  1Q82 X;  2ZJP W;  2ZJR W;  1M90 X;  1VQN W;  4IOC W;  5HL7 W;  1VQM W;  1VQ7 W;  4WFN W;  4IOA W;  1BXY A;  1M1K X;  3OW2 V;  3CC4 W;  3G71 W;  1Q86 X;  1VQO W;  1VQ5 W;  5JVG W;  2OTL W;  3DLL W;  4IO9 W;  3CCV W;  3CPW V;  1YJN W;  1VQ8 W;  5DM6 W;  1KC8 X;  1VQK W;  1VQ9 W;  1W2B V;  2OTJ W;  1Q81 X;  2ZJQ W;  3G4S W;  3I55 W;  1N8R X;  3CCE W;  1QVF V;  3CC7 W;  4WCE W;  4UY8 Z;  3CD6 W;  5GAE a;  3CCU W;  1JJ2 V;  1S72 W;  1K8A X;  3CF5 W;  3CXC V;  3I56 W;  3CCS W;  1VQ6 W;  3CME W;  5DM7 W;  1YJW W;  1VQL W;  4WFA W;  3CC2 W;  5JVH W;  4U67 W;  1YIT W;  3PIP W;  1NJI X;  3CCR W;  1YJ9 W;  2QA4 W;  4WFB W;  1YHQ W;  1K73 X; 
#chains in the Genus database with same CATH topology
 1Q7Y X;  3O2H A;  3O1F A;  1MWU A;  1R6Q C;  1KD1 X;  3CCM W;  1K9M X;  3G3P A;  2QEX W;  1YI2 W;  1YIJ W;  3G6E W;  4CJN A;  1RQV A;  3O2B A;  4WF9 W;  3J7Z Z;  3CCQ W;  5GAD a;  4YKA A;  1KQS V;  5GW7 A;  3CMA W;  1QVG V;  3PIO W;  5GAG a;  3CCL W;  1VQ4 W;  3GW1 A;  1VQP W;  2W9R A;  1MWR A;  5GAH a;  3CCJ W;  3O1F B;  4YJX A;  1Q82 X;  3W7T A;  4CPK A;  4BL2 A;  2ZJP W;  2ZJR W;  1MBU C;  1M90 X;  2WA9 A;  1VQN W;  4IOC W;  5HL7 W;  3GQ1 A;  1MBX C;  1VQM W;  1VQ7 W;  4WFN W;  4BL3 A;  4IOA W;  5M1A A;  1MWT A;  3G19 A;  1BXY A;  1M1K X;  3OW2 V;  3CC4 W;  3G71 W;  1Q86 X;  3W7S A;  1VQO W;  1VQ5 W;  5JVG W;  2OTL W;  3DLL W;  4IO9 W;  1MBV B;  1R6O C;  3CCV W;  3CPW V;  1YJN W;  3W7X A;  3GQ0 A;  1MG9 A;  1VQ8 W;  5CA3 A;  3ZG5 A;  4DKI A;  1DD4 A;  5DM6 W;  1KC8 X;  1VQK W;  1VQ9 W;  3DNJ A;  3ZG0 A;  2WA8 A;  3ZFZ A;  1W2B V;  2OTJ W;  1Q81 X;  2ZJQ W;  3G4S W;  1MWS A;  3I55 W;  1N8R X;  3CCE W;  1QVF V;  5M18 A;  3CC7 W;  4WCE W;  4UY8 Z;  3CD6 W;  3D3I A;  5GAE a;  3CCU W;  1JJ2 V;  1S72 W;  1K8A X;  3CF5 W;  1DD3 A;  3CXC V;  3I56 W;  3CCS W;  1VQ6 W;  1VQQ A;  3CME W;  4YJM A;  5DM7 W;  1YJW W;  3G1B A;  1VQL W;  5M19 A;  4WFA W;  3CC2 W;  3W7W A;  3W7U A;  3O2O A;  5JVH W;  4U67 W;  1YIT W;  1LZW A;  3PIP W;  1RQU A;  1NJI X;  3CCR W;  1CTF A;  1YJ9 W;  2QA4 W;  4WFB W;  1YHQ W;  1RQS A;  1K73 X; 
#chains in the Genus database with same CATH homology
 1Q7Y X;  1KD1 X;  3CCM W;  1K9M X;  2QEX W;  1YI2 W;  1YIJ W;  3G6E W;  4WF9 W;  3J7Z Z;  3CCQ W;  5GAD a;  1KQS V;  3CMA W;  1QVG V;  3PIO W;  5GAG a;  3CCL W;  1VQ4 W;  1VQP W;  5GAH a;  3CCJ W;  1Q82 X;  2ZJP W;  2ZJR W;  1M90 X;  1VQN W;  4IOC W;  5HL7 W;  1VQM W;  1VQ7 W;  4WFN W;  4IOA W;  1BXY A;  1M1K X;  3OW2 V;  3CC4 W;  3G71 W;  1Q86 X;  1VQO W;  1VQ5 W;  5JVG W;  2OTL W;  3DLL W;  4IO9 W;  3CCV W;  3CPW V;  1YJN W;  1VQ8 W;  5DM6 W;  1KC8 X;  1VQK W;  1VQ9 W;  1W2B V;  2OTJ W;  1Q81 X;  2ZJQ W;  3G4S W;  3I55 W;  1N8R X;  3CCE W;  1QVF V;  3CC7 W;  4WCE W;  4UY8 Z;  3CD6 W;  5GAE a;  3CCU W;  1JJ2 V;  1S72 W;  1K8A X;  3CF5 W;  3CXC V;  3I56 W;  3CCS W;  1VQ6 W;  3CME W;  5DM7 W;  1YJW W;  1VQL W;  4WFA W;  3CC2 W;  5JVH W;  4U67 W;  1YIT W;  3PIP W;  1NJI X;  3CCR W;  1YJ9 W;  2QA4 W;  4WFB W;  1YHQ W;  1K73 X; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...