4WCEW

The crystal structure of the large ribosomal subunit of staphylococcus aureus
Total Genus 14

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
58
structure length
58
Chain Sequence
MAKLQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVEE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYS1 (3-8)S3 (54-56)TII'2 (30-33)TII'1 (12-15)TI'1 (16-19)TI'2 (17-20)3H4 (51-53)3H1 (21-26)S2 (33-38)3H2 (43-45)TIV2 (40-43)3H3 (47-49)Updating...
connected with : NaN
molecule tags Ribosome
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule keywords 23S rRNA
total genus 14
structure length 58
sequence length 58
ec nomenclature
pdb deposition date 2014-09-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 4wceW00
3PIOW 5JVGW 5JVHW 2OTJW 3CMAW 1K8AX 2ZJQW 3CCUW 5GADa 5HL7W 1Q82X 3CC2W 3CXCV 4UY8Z 1VQLW 3PIPW 2ZJPW 4IOCW 1BXYA 1N8RX 1Q86X 4WF9W 3CMEW 1YJ9W 3CCMW 1YIJW 1Q81X 1VQPW 1QVFV 1YHQW 1VQ5W 1W2BV 1K9MX 1VQ7W 4U67W 1VQOW 1K73X 3CD6W 3CCRW 1VQNW 2QEXW 1VQKW 3G71W 3G6EW 4WFBW 3CCJW 5GAGa 2ZJRW 5GAEa 3G4SW 1YJNW 4IOAW 5DM6W 3CPWV 1VQ9W 4WFAW 1NJIX 1Q7YX 3CCVW 3CCQW 1KQSV 1KD1X 3I56W 3I55W 3CCLW 1M90X 3CF5W 1M1KX 5DM7W 2QA4W 1VQ8W 1VQ6W 1S72W 1VQMW 3OW2V 1YI2W 1VQ4W 1YJWW 4WFNW 3CC4W 3CCEW 3CCSW 1KC8X 3J7ZZ 5GAHa 3DLLW 1QVGV 4WCEW 2OTLW 1JJ2V 1YITW 4IO9W 3CC7W
chains in the Genus database with same CATH superfamily
3PIOW 4CJNA 4YJXA 5JVGW 5JVHW 2OTJW 3CMAW 1MBVB 1K8AX 3G1BA 2ZJQW 3CCUW 5GADa 5HL7W 3DNJA 1MWUA 1Q82X 3GW1A 3CC2W 5M1AA 3CXCV 4IO9W 4UY8Z 1VQLW 3PIPW 2ZJPW 4IOCW 5CA3A 1BXYA 1MWRA 1N8RX 1R6QC 1Q86X 2WA8A 2W9RA 3ZFZA 1VQQA 4WF9W 3CMEW 1MWTA 3CCMW 1YJ9W 4YKAA 3W7UA 1YIJW 1Q81X 4BL3A 1VQPW 1QVFV 5GW7A 1YHQW 1VQ5W 1LZWA 3W7SA 1W2BV 1K9MX 1VQ7W 4U67W 1VQOW 1K73X 3CD6W 3CCRW 3ZG5A 2QEXW 1VQKW 1VQNW 3G71W 3G6EW 4WFBW 5M18A 3CCJW 5GAGa 1MBUC 2ZJRW 5GAEa 3G4SW 1YJNW 4IOAW 5DM6W 3CPWV 1CTFA 1MG9A 1VQ9W 4WFAW 1NJIX 3W7WA 1MBXC 1RQUA 1Q7YX 3CCVW 3CCQW 1DD4A 3O1FA 1R6OC 3W7XA 1KQSV 1RQSA 1KD1X 3I56W 3GQ1A 3ZG0A 3I55W 2WA9A 3CCLW 3O2OA 4BL2A 3CF5W 1M90X 1M1KX 5DM7W 2QA4W 1VQ8W 1VQ6W 1RQVA 1S72W 4DKIA 3O1FB 1VQMW 3O2HA 3D3IA 3OW2V 3G19A 1YI2W 1MWSA 1VQ4W 1YJWW 3G3PA 4YJMA 4WFNW 5M19A 3CC4W 3CCEW 3CCSW 1KC8X 1DD3A 3GQ0A 4CPKA 3J7ZZ 5GAHa 3W7TA 3DLLW 1QVGV 4WCEW 2OTLW 1JJ2V 1YITW 3O2BA 3CC7W
chains in the Genus database with same CATH topology
3PIOW 5JVGW 5JVHW 2OTJW 3CMAW 1K8AX 2ZJQW 3CCUW 5GADa 5HL7W 1Q82X 3CC2W 3CXCV 4UY8Z 1VQLW 3PIPW 2ZJPW 4IOCW 1BXYA 1N8RX 1Q86X 4WF9W 3CMEW 1YJ9W 3CCMW 1YIJW 1Q81X 1VQPW 1QVFV 1YHQW 1VQ5W 1W2BV 1K9MX 1VQ7W 4U67W 1VQOW 1K73X 3CD6W 3CCRW 1VQNW 2QEXW 1VQKW 3G71W 3G6EW 4WFBW 3CCJW 5GAGa 2ZJRW 5GAEa 3G4SW 1YJNW 4IOAW 5DM6W 3CPWV 1VQ9W 4WFAW 1NJIX 1Q7YX 3CCVW 3CCQW 1KQSV 1KD1X 3I56W 3I55W 3CCLW 1M90X 3CF5W 1M1KX 5DM7W 2QA4W 1VQ8W 1VQ6W 1S72W 1VQMW 3OW2V 1YI2W 1VQ4W 1YJWW 4WFNW 3CC4W 3CCEW 3CCSW 1KC8X 3J7ZZ 5GAHa 3DLLW 1QVGV 4WCEW 2OTLW 1JJ2V 1YITW 4IO9W 3CC7W
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3PIO W;  5JVG W;  5JVH W;  2OTJ W;  3CMA W;  1K8A X;  2ZJQ W;  3CCU W;  5GAD a;  5HL7 W;  1Q82 X;  3CC2 W;  3CXC V;  4UY8 Z;  1VQL W;  3PIP W;  2ZJP W;  4IOC W;  1BXY A;  1N8R X;  1Q86 X;  4WF9 W;  3CME W;  1YJ9 W;  3CCM W;  1YIJ W;  1Q81 X;  1VQP W;  1QVF V;  1YHQ W;  1VQ5 W;  1W2B V;  1K9M X;  1VQ7 W;  4U67 W;  1VQO W;  1K73 X;  3CD6 W;  3CCR W;  1VQN W;  2QEX W;  1VQK W;  3G71 W;  3G6E W;  4WFB W;  3CCJ W;  5GAG a;  2ZJR W;  5GAE a;  3G4S W;  1YJN W;  4IOA W;  5DM6 W;  3CPW V;  1VQ9 W;  4WFA W;  1NJI X;  1Q7Y X;  3CCV W;  3CCQ W;  1KQS V;  1KD1 X;  3I56 W;  3I55 W;  3CCL W;  1M90 X;  3CF5 W;  1M1K X;  5DM7 W;  2QA4 W;  1VQ8 W;  1VQ6 W;  1S72 W;  1VQM W;  3OW2 V;  1YI2 W;  1VQ4 W;  1YJW W;  4WFN W;  3CC4 W;  3CCE W;  3CCS W;  1KC8 X;  3J7Z Z;  5GAH a;  3DLL W;  1QVG V;  4WCE W;  2OTL W;  1JJ2 V;  1YIT W;  4IO9 W;  3CC7 W; 
#chains in the Genus database with same CATH topology
 3PIO W;  4CJN A;  4YJX A;  5JVG W;  5JVH W;  2OTJ W;  3CMA W;  1MBV B;  1K8A X;  3G1B A;  2ZJQ W;  3CCU W;  5GAD a;  5HL7 W;  3DNJ A;  1MWU A;  1Q82 X;  3GW1 A;  3CC2 W;  5M1A A;  3CXC V;  4IO9 W;  4UY8 Z;  1VQL W;  3PIP W;  2ZJP W;  4IOC W;  5CA3 A;  1BXY A;  1MWR A;  1N8R X;  1R6Q C;  1Q86 X;  2WA8 A;  2W9R A;  3ZFZ A;  1VQQ A;  4WF9 W;  3CME W;  1MWT A;  3CCM W;  1YJ9 W;  4YKA A;  3W7U A;  1YIJ W;  1Q81 X;  4BL3 A;  1VQP W;  1QVF V;  5GW7 A;  1YHQ W;  1VQ5 W;  1LZW A;  3W7S A;  1W2B V;  1K9M X;  1VQ7 W;  4U67 W;  1VQO W;  1K73 X;  3CD6 W;  3CCR W;  3ZG5 A;  2QEX W;  1VQK W;  1VQN W;  3G71 W;  3G6E W;  4WFB W;  5M18 A;  3CCJ W;  5GAG a;  1MBU C;  2ZJR W;  5GAE a;  3G4S W;  1YJN W;  4IOA W;  5DM6 W;  3CPW V;  1CTF A;  1MG9 A;  1VQ9 W;  4WFA W;  1NJI X;  3W7W A;  1MBX C;  1RQU A;  1Q7Y X;  3CCV W;  3CCQ W;  1DD4 A;  3O1F A;  1R6O C;  3W7X A;  1KQS V;  1RQS A;  1KD1 X;  3I56 W;  3GQ1 A;  3ZG0 A;  3I55 W;  2WA9 A;  3CCL W;  3O2O A;  4BL2 A;  3CF5 W;  1M90 X;  1M1K X;  5DM7 W;  2QA4 W;  1VQ8 W;  1VQ6 W;  1RQV A;  1S72 W;  4DKI A;  3O1F B;  1VQM W;  3O2H A;  3D3I A;  3OW2 V;  3G19 A;  1YI2 W;  1MWS A;  1VQ4 W;  1YJW W;  3G3P A;  4YJM A;  4WFN W;  5M19 A;  3CC4 W;  3CCE W;  3CCS W;  1KC8 X;  1DD3 A;  3GQ0 A;  4CPK A;  3J7Z Z;  5GAH a;  3W7T A;  3DLL W;  1QVG V;  4WCE W;  2OTL W;  1JJ2 V;  1YIT W;  3O2B A;  3CC7 W; 
#chains in the Genus database with same CATH homology
 3PIO W;  5JVG W;  5JVH W;  2OTJ W;  3CMA W;  1K8A X;  2ZJQ W;  3CCU W;  5GAD a;  5HL7 W;  1Q82 X;  3CC2 W;  3CXC V;  4UY8 Z;  1VQL W;  3PIP W;  2ZJP W;  4IOC W;  1BXY A;  1N8R X;  1Q86 X;  4WF9 W;  3CME W;  1YJ9 W;  3CCM W;  1YIJ W;  1Q81 X;  1VQP W;  1QVF V;  1YHQ W;  1VQ5 W;  1W2B V;  1K9M X;  1VQ7 W;  4U67 W;  1VQO W;  1K73 X;  3CD6 W;  3CCR W;  1VQN W;  2QEX W;  1VQK W;  3G71 W;  3G6E W;  4WFB W;  3CCJ W;  5GAG a;  2ZJR W;  5GAE a;  3G4S W;  1YJN W;  4IOA W;  5DM6 W;  3CPW V;  1VQ9 W;  4WFA W;  1NJI X;  1Q7Y X;  3CCV W;  3CCQ W;  1KQS V;  1KD1 X;  3I56 W;  3I55 W;  3CCL W;  1M90 X;  3CF5 W;  1M1K X;  5DM7 W;  2QA4 W;  1VQ8 W;  1VQ6 W;  1S72 W;  1VQM W;  3OW2 V;  1YI2 W;  1VQ4 W;  1YJW W;  4WFN W;  3CC4 W;  3CCE W;  3CCS W;  1KC8 X;  3J7Z Z;  5GAH a;  3DLL W;  1QVG V;  4WCE W;  2OTL W;  1JJ2 V;  1YIT W;  4IO9 W;  3CC7 W;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
Application loaded.