4WFB | Genus

Total Genus 12

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	12
sequence length	57
structure length	57
Chain Sequence	AKLQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVEE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus. pubmed doi rcsb
molecule keywords	23S rRNA
total genus	12
structure length	57
sequence length	57
ec nomenclature
pdb deposition date	2014-09-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
W	PF00327	Ribosomal_L30	Ribosomal protein L30p/L7e

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1390.20	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30; Chain: A,	Ribosomal protein L30, ferredoxin-like fold domain	4wfbW00

5GAHa 1YIJW 3CC2W 1VQ5W 2QA4W 3CCRW 3CCSW 1YITW 3CCEW 1Q82X 3OW2V 1Q86X 1VQPW 1VQNW 1M1KX 1K73X 5DM6W 2ZJPW 3CMEW 4IO9W 3PIPW 1YI2W 5GAEa 1N8RX 4WFBW 1YJNW 1VQOW 2QEXW 3DLLW 1JJ2V 1YJ9W 1KC8X 1QVGV 4IOAW 1M90X 2ZJQW 2ZJRW 3CCJW 3CCMW 3CC7W 5GADa 3PIOW 1K9MX 1VQMW 1Q7YX 5JVHW 3G6EW 3CMAW 1S72W 1W2BV 3CCVW 3CC4W 1YJWW 3CXCV 4WCEW 3I55W 1VQ7W 5DM7W 1QVFV 1K8AX 1VQ9W 3CD6W 5JVGW 1YHQW 1NJIX 3G4SW 1VQLW 1VQ8W 4WFNW 2OTJW 1VQ4W 3CCQW 4WFAW 3I56W 3CF5W 3CCLW 4WF9W 1Q81X 1VQ6W 5GAGa 5HL7W 4U67W 3CPWV 1BXYA 3G71W 4UY8Z 3CCUW 1KD1X 1KQSV 1VQKW 2OTLW 3J7ZZ 4IOCW
chains in the Genus database with same CATH superfamily

5GAHa 3W7XA 1YIJW 3CC2W 1VQ5W 2QA4W 3CCRW 3CCSW 3O1FB 1YITW 4CPKA 4CJNA 3CCEW 1Q82X 3OW2V 1R6QC 1Q86X 1MWTA 1VQPW 1VQNW 1M1KX 3G19A 3O2BA 1RQVA 5DM6W 1K73X 5GW7A 2ZJPW 3O2OA 3CMEW 4IO9W 3GW1A 3PIPW 1YI2W 5GAEa 1VQQA 4BL3A 1N8RX 4WFBW 1YJNW 1VQOW 3ZG0A 2QEXW 3DLLW 3GQ0A 1LZWA 3G1BA 1JJ2V 1YJ9W 1MWSA 1KC8X 3W7TA 1QVGV 3DNJA 4IOAW 1M90X 2ZJQW 2ZJRW 1MBUC 4YJMA 3CCJW 3O1FA 3W7WA 3CCMW 3CC7W 5GADa 3PIOW 1VQMW 1K9MX 1Q7YX 5JVHW 3W7UA 4DKIA 3G6EW 1R6OC 2WA8A 3CMAW 1S72W 1W2BV 3CCVW 3CC4W 1YJWW 1RQUA 1MWRA 3W7SA 3CXCV 4WCEW 4YKAA 2WA9A 3I55W 3G3PA 1VQ7W 5DM7W 1QVFV 1K8AX 1VQ9W 1MBVB 1RQSA 5M1AA 3CD6W 3ZFZA 3ZG5A 5JVGW 1YHQW 1NJIX 3G4SW 1VQLW 3D3IA 1VQ8W 4WFNW 2OTJW 1VQ4W 4BL2A 5M18A 1DD3A 5M19A 3GQ1A 3CCQW 5CA3A 4WFAW 3I56W 2W9RA 3CF5W 3CCLW 4WF9W 1Q81X 1VQ6W 1MG9A 1CTFA 5GAGa 5HL7W 4U67W 3CPWV 1BXYA 4YJXA 3G71W 1MWUA 3CCUW 4UY8Z 1KD1X 1KQSV 1VQKW 2OTLW 1DD4A 3O2HA 1MBXC 3J7ZZ 4IOCW
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5GAH a;  1YIJ W;  3CC2 W;  1VQ5 W;  2QA4 W;  3CCR W;  3CCS W;  1YIT W;  3CCE W;  1Q82 X;  3OW2 V;  1Q86 X;  1VQP W;  1VQN W;  1M1K X;  1K73 X;  5DM6 W;  2ZJP W;  3CME W;  4IO9 W;  3PIP W;  1YI2 W;  5GAE a;  1N8R X;  4WFB W;  1YJN W;  1VQO W;  2QEX W;  3DLL W;  1JJ2 V;  1YJ9 W;  1KC8 X;  1QVG V;  4IOA W;  1M90 X;  2ZJQ W;  2ZJR W;  3CCJ W;  3CCM W;  3CC7 W;  5GAD a;  3PIO W;  1K9M X;  1VQM W;  1Q7Y X;  5JVH W;  3G6E W;  3CMA W;  1S72 W;  1W2B V;  3CCV W;  3CC4 W;  1YJW W;  3CXC V;  4WCE W;  3I55 W;  1VQ7 W;  5DM7 W;  1QVF V;  1K8A X;  1VQ9 W;  3CD6 W;  5JVG W;  1YHQ W;  1NJI X;  3G4S W;  1VQL W;  1VQ8 W;  4WFN W;  2OTJ W;  1VQ4 W;  3CCQ W;  4WFA W;  3I56 W;  3CF5 W;  3CCL W;  4WF9 W;  1Q81 X;  1VQ6 W;  5GAG a;  5HL7 W;  4U67 W;  3CPW V;  1BXY A;  3G71 W;  4UY8 Z;  3CCU W;  1KD1 X;  1KQS V;  1VQK W;  2OTL W;  3J7Z Z;  4IOC W; 
#chains in the Genus database with same CATH topology
 5GAH a;  3W7X A;  1YIJ W;  3CC2 W;  1VQ5 W;  2QA4 W;  3CCR W;  3CCS W;  3O1F B;  1YIT W;  4CPK A;  4CJN A;  3CCE W;  1Q82 X;  3OW2 V;  1R6Q C;  1Q86 X;  1MWT A;  1VQP W;  1VQN W;  1M1K X;  3G19 A;  3O2B A;  1RQV A;  5DM6 W;  1K73 X;  5GW7 A;  2ZJP W;  3O2O A;  3CME W;  4IO9 W;  3GW1 A;  3PIP W;  1YI2 W;  5GAE a;  1VQQ A;  4BL3 A;  1N8R X;  4WFB W;  1YJN W;  1VQO W;  3ZG0 A;  2QEX W;  3DLL W;  3GQ0 A;  1LZW A;  3G1B A;  1JJ2 V;  1YJ9 W;  1MWS A;  1KC8 X;  3W7T A;  1QVG V;  3DNJ A;  4IOA W;  1M90 X;  2ZJQ W;  2ZJR W;  1MBU C;  4YJM A;  3CCJ W;  3O1F A;  3W7W A;  3CCM W;  3CC7 W;  5GAD a;  3PIO W;  1VQM W;  1K9M X;  1Q7Y X;  5JVH W;  3W7U A;  4DKI A;  3G6E W;  1R6O C;  2WA8 A;  3CMA W;  1S72 W;  1W2B V;  3CCV W;  3CC4 W;  1YJW W;  1RQU A;  1MWR A;  3W7S A;  3CXC V;  4WCE W;  4YKA A;  2WA9 A;  3I55 W;  3G3P A;  1VQ7 W;  5DM7 W;  1QVF V;  1K8A X;  1VQ9 W;  1MBV B;  1RQS A;  5M1A A;  3CD6 W;  3ZFZ A;  3ZG5 A;  5JVG W;  1YHQ W;  1NJI X;  3G4S W;  1VQL W;  3D3I A;  1VQ8 W;  4WFN W;  2OTJ W;  1VQ4 W;  4BL2 A;  5M18 A;  1DD3 A;  5M19 A;  3GQ1 A;  3CCQ W;  5CA3 A;  4WFA W;  3I56 W;  2W9R A;  3CF5 W;  3CCL W;  4WF9 W;  1Q81 X;  1VQ6 W;  1MG9 A;  1CTF A;  5GAG a;  5HL7 W;  4U67 W;  3CPW V;  1BXY A;  4YJX A;  3G71 W;  1MWU A;  3CCU W;  4UY8 Z;  1KD1 X;  1KQS V;  1VQK W;  2OTL W;  1DD4 A;  3O2H A;  1MBX C;  3J7Z Z;  4IOC W; 
#chains in the Genus database with same CATH homology
 5GAH a;  1YIJ W;  3CC2 W;  1VQ5 W;  2QA4 W;  3CCR W;  3CCS W;  1YIT W;  3CCE W;  1Q82 X;  3OW2 V;  1Q86 X;  1VQP W;  1VQN W;  1M1K X;  1K73 X;  5DM6 W;  2ZJP W;  3CME W;  4IO9 W;  3PIP W;  1YI2 W;  5GAE a;  1N8R X;  4WFB W;  1YJN W;  1VQO W;  2QEX W;  3DLL W;  1JJ2 V;  1YJ9 W;  1KC8 X;  1QVG V;  4IOA W;  1M90 X;  2ZJQ W;  2ZJR W;  3CCJ W;  3CCM W;  3CC7 W;  5GAD a;  3PIO W;  1K9M X;  1VQM W;  1Q7Y X;  5JVH W;  3G6E W;  3CMA W;  1S72 W;  1W2B V;  3CCV W;  3CC4 W;  1YJW W;  3CXC V;  4WCE W;  3I55 W;  1VQ7 W;  5DM7 W;  1QVF V;  1K8A X;  1VQ9 W;  3CD6 W;  5JVG W;  1YHQ W;  1NJI X;  3G4S W;  1VQL W;  1VQ8 W;  4WFN W;  2OTJ W;  1VQ4 W;  3CCQ W;  4WFA W;  3I56 W;  3CF5 W;  3CCL W;  4WF9 W;  1Q81 X;  1VQ6 W;  5GAG a;  5HL7 W;  4U67 W;  3CPW V;  1BXY A;  3G71 W;  4UY8 Z;  3CCU W;  1KD1 X;  1KQS V;  1VQK W;  2OTL W;  3J7Z Z;  4IOC W;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4WFBW

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations