4YJXA

The structure of agrobacterium tumefaciens clps2 bound to l-phenylalaninamide
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
83
structure length
83
Chain Sequence
RPKLYKVMLLNDDYTPREFVTVVLKAVFRMSEDTGRRVMMTAHRFGSAVVVVCERDIAETKAKEATDLGKEAGFPLMFTTEPE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis of an N-Degron Adaptor with More Stringent Specificity.
pubmed doi rcsb
molecule tags Protein binding
source organism Agrobacterium fabrum (strain c58 / atcc 33970)
molecule keywords ATP-dependent Clp protease adapter protein ClpS 2
total genus 24
structure length 83
sequence length 83
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2015-03-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 4yjxA00
1MG9A 3GQ1A 4YJMA 1CTFA 3GW1A 2W9RA 1RQSA 1MBXC 1DD4A 1LZWA 3O2BA 3G3PA 3G19A 1RQVA 2WA9A 1R6OC 1MBUC 1MBVB 3G1BA 3O1FA 3GQ0A 4YKAA 3O1FB 1RQUA 4YJXA 1R6QC 3O2OA 1DD3A 3DNJA 2WA8A 3O2HA
chains in the Genus database with same CATH superfamily
5M18A 3GQ1A 4YJMA 3CC4W 3CCSW 1CTFA 3CXCV 1Q81X 3G6EW 3CCVW 1W2BV 1S72W 3OW2V 3DLLW 5DM7W 1Q82X 1MBVB 4WCEW 2ZJQW 3CC7W 5CA3A 3CCMW 3I56W 1M90X 1VQPW 3CCEW 4YJXA 5GADa 1R6QC 3CMEW 5GW7A 5GAHa 3O2OA 3ZG0A 1KQSV 1MWUA 1YHQW 1YJ9W 3GW1A 1YJNW 1MBXC 5JVHW 1KC8X 5GAEa 2ZJRW 1VQ6W 1QVGV 3CCUW 3G3PA 3ZFZA 3G19A 3G71W 4WFNW 2WA9A 1Q7YX 1Q86X 5M1AA 1R6OC 4WFAW 1K9MX 1VQ5W 3W7TA 4BL2A 1VQ9W 1VQNW 4YKAA 1YITW 3W7SA 4IO9W 5JVGW 1YI2W 1MWSA 3D3IA 2ZJPW 5M19A 5GAGa 3ZG5A 5DM6W 1MWRA 1DD4A 3CCQW 1LZWA 4CPKA 3W7UA 1VQ8W 3CCRW 4CJNA 1RQVA 3CPWV 1VQQA 5HL7W 1YJWW 2QEXW 1NJIX 3CC2W 3W7XA 4WFBW 3W7WA 2OTJW 3PIPW 3CF5W 2OTLW 3O1FB 1QVFV 1VQ4W 1RQUA 3I55W 1VQLW 4UY8Z 3DNJA 4BL3A 2WA8A 1K8AX 1MG9A 4IOCW 3CCJW 2QA4W 2W9RA 1RQSA 1BXYA 1VQ7W 1KD1X 3O2BA 1YIJW 1VQOW 4DKIA 1MBUC 3CD6W 3G1BA 3O1FA 1VQKW 3GQ0A 3CCLW 4IOAW 1N8RX 1VQMW 3PIOW 4U67W 1K73X 1JJ2V 4WF9W 1MWTA 3J7ZZ 3G4SW 3CMAW 1DD3A 1M1KX 3O2HA
chains in the Genus database with same CATH topology
1MG9A 3GQ1A 4YJMA 1CTFA 3GW1A 2W9RA 1RQSA 1MBXC 1DD4A 1LZWA 3O2BA 3G3PA 3G19A 1RQVA 2WA9A 1R6OC 1MBUC 1MBVB 3G1BA 3O1FA 3GQ0A 4YKAA 3O1FB 1RQUA 4YJXA 1R6QC 3O2OA 1DD3A 3DNJA 2WA8A 3O2HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MG9 A;  3GQ1 A;  4YJM A;  1CTF A;  3GW1 A;  2W9R A;  1RQS A;  1MBX C;  1DD4 A;  1LZW A;  3O2B A;  3G3P A;  3G19 A;  1RQV A;  2WA9 A;  1R6O C;  1MBU C;  1MBV B;  3G1B A;  3O1F A;  3GQ0 A;  4YKA A;  3O1F B;  1RQU A;  4YJX A;  1R6Q C;  3O2O A;  1DD3 A;  3DNJ A;  2WA8 A;  3O2H A; 
#chains in the Genus database with same CATH topology
 5M18 A;  3GQ1 A;  4YJM A;  3CC4 W;  3CCS W;  1CTF A;  3CXC V;  1Q81 X;  3G6E W;  3CCV W;  1W2B V;  1S72 W;  3OW2 V;  3DLL W;  5DM7 W;  1Q82 X;  1MBV B;  4WCE W;  2ZJQ W;  3CC7 W;  5CA3 A;  3CCM W;  3I56 W;  1M90 X;  1VQP W;  3CCE W;  4YJX A;  5GAD a;  1R6Q C;  3CME W;  5GW7 A;  5GAH a;  3O2O A;  3ZG0 A;  1KQS V;  1MWU A;  1YHQ W;  1YJ9 W;  3GW1 A;  1YJN W;  1MBX C;  5JVH W;  1KC8 X;  5GAE a;  2ZJR W;  1VQ6 W;  1QVG V;  3CCU W;  3G3P A;  3ZFZ A;  3G19 A;  3G71 W;  4WFN W;  2WA9 A;  1Q7Y X;  1Q86 X;  5M1A A;  1R6O C;  4WFA W;  1K9M X;  1VQ5 W;  3W7T A;  4BL2 A;  1VQ9 W;  1VQN W;  4YKA A;  1YIT W;  3W7S A;  4IO9 W;  5JVG W;  1YI2 W;  1MWS A;  3D3I A;  2ZJP W;  5M19 A;  5GAG a;  3ZG5 A;  5DM6 W;  1MWR A;  1DD4 A;  3CCQ W;  1LZW A;  4CPK A;  3W7U A;  1VQ8 W;  3CCR W;  4CJN A;  1RQV A;  3CPW V;  1VQQ A;  5HL7 W;  1YJW W;  2QEX W;  1NJI X;  3CC2 W;  3W7X A;  4WFB W;  3W7W A;  2OTJ W;  3PIP W;  3CF5 W;  2OTL W;  3O1F B;  1QVF V;  1VQ4 W;  1RQU A;  3I55 W;  1VQL W;  4UY8 Z;  3DNJ A;  4BL3 A;  2WA8 A;  1K8A X;  1MG9 A;  4IOC W;  3CCJ W;  2QA4 W;  2W9R A;  1RQS A;  1BXY A;  1VQ7 W;  1KD1 X;  3O2B A;  1YIJ W;  1VQO W;  4DKI A;  1MBU C;  3CD6 W;  3G1B A;  3O1F A;  1VQK W;  3GQ0 A;  3CCL W;  4IOA W;  1N8R X;  1VQM W;  3PIO W;  4U67 W;  1K73 X;  1JJ2 V;  4WF9 W;  1MWT A;  3J7Z Z;  3G4S W;  3CMA W;  1DD3 A;  1M1K X;  3O2H A; 
#chains in the Genus database with same CATH homology
 1MG9 A;  3GQ1 A;  4YJM A;  1CTF A;  3GW1 A;  2W9R A;  1RQS A;  1MBX C;  1DD4 A;  1LZW A;  3O2B A;  3G3P A;  3G19 A;  1RQV A;  2WA9 A;  1R6O C;  1MBU C;  1MBV B;  3G1B A;  3O1F A;  3GQ0 A;  4YKA A;  3O1F B;  1RQU A;  4YJX A;  1R6Q C;  3O2O A;  1DD3 A;  3DNJ A;  2WA8 A;  3O2H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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