4YKAA

The structure of agrobacterium tumefaciens clps2 in complex with l-tyrosinamide
Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
83
structure length
83
Chain Sequence
RPKLYKVMLLNDDYTPREFVTVVLKAVFRMSEDTGRRVMMTAHRFGSAVVVVCERDIAETKAKEATDLGKEAGFPLMFTTEPE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
S1 (23-29)TIV1 (31-34)AH2 (51-64)EMPTYAH1 (36-47)AH3 (74-91)S2 (66-73)Updating...
connected with : NaN
molecule tags Protein binding
source organism Agrobacterium fabrum (strain c58 / atcc 33970)
publication title Structural Basis of an N-Degron Adaptor with More Stringent Specificity.
pubmed doi rcsb
molecule keywords ATP-dependent Clp protease adapter protein ClpS 2
total genus 24
structure length 83
sequence length 83
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2015-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 4ykaA00
3G1BA 1LZWA 1DD3A 3GQ1A 1DD4A 1RQSA 3O2HA 3O1FB 1RQVA 2WA9A 1R6QC 1MBUC 3GQ0A 4YKAA 1MBXC 4YJXA 1RQUA 3G3PA 3O2BA 1MBVB 3GW1A 3O2OA 2WA8A 1R6OC 4YJMA 3G19A 2W9RA 1MG9A 1CTFA 3O1FA 3DNJA
chains in the Genus database with same CATH superfamily
5M19A 3CF5W 3W7UA 1VQ8W 1VQMW 3W7SA 5GAHa 3I56W 1VQ4W 1RQSA 3CCMW 3CCSW 2WA9A 3CCUW 1VQ6W 1VQ5W 1KD1X 4YJXA 1RQUA 5GW7A 1YI2W 1M1KX 2OTLW 3G4SW 3CCQW 2OTJW 2WA8A 3ZFZA 1QVFV 5DM6W 5M1AA 5M18A 1VQNW 1YJNW 4WFBW 3DNJA 4IOCW 4BL2A 1LZWA 1DD3A 3D3IA 4WCEW 1DD4A 3G6EW 4IOAW 4DKIA 3I55W 1M90X 1BXYA 4BL3A 1NJIX 2QEXW 1Q81X 5GADa 3PIPW 2ZJRW 1MBXC 1Q7YX 1VQPW 4WF9W 3G3PA 1MWUA 3O2BA 1MBVB 1YIJW 3GW1A 4CJNA 1KQSV 5CA3A 2W9RA 4WFNW 5JVHW 4WFAW 1MWSA 3G71W 1K8AX 1N8RX 1YJ9W 3PIOW 3O2HA 4IO9W 3W7XA 1RQVA 3CMAW 2ZJPW 3CC4W 1YHQW 5GAGa 4YKAA 1YITW 3CCLW 1VQ9W 3ZG0A 3DLLW 3CCEW 5HL7W 3CC7W 1VQOW 3O2OA 1R6OC 3G19A 3CCVW 1Q86X 1MG9A 3CCJW 1CTFA 3O1FA 1QVGV 3W7WA 1YJWW 3G1BA 1S72W 5GAEa 1JJ2V 3CC2W 3GQ1A 1K73X 2ZJQW 3CPWV 3CCRW 3O1FB 1W2BV 3ZG5A 1K9MX 3W7TA 1VQQA 5DM7W 1R6QC 3OW2V 1MBUC 3GQ0A 1KC8X 1MWRA 3CD6W 1VQLW 4CPKA 1Q82X 4UY8Z 3J7ZZ 4YJMA 1MWTA 3CMEW 1VQ7W 5JVGW 4U67W 1VQKW 2QA4W 3CXCV
chains in the Genus database with same CATH topology
3G1BA 1LZWA 1DD3A 3GQ1A 1DD4A 1RQSA 3O2HA 3O1FB 1RQVA 2WA9A 1R6QC 1MBUC 3GQ0A 4YKAA 1MBXC 4YJXA 1RQUA 3G3PA 3O2BA 1MBVB 3GW1A 3O2OA 2WA8A 1R6OC 4YJMA 3G19A 2W9RA 1MG9A 1CTFA 3O1FA 3DNJA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3G1B A;  1LZW A;  1DD3 A;  3GQ1 A;  1DD4 A;  1RQS A;  3O2H A;  3O1F B;  1RQV A;  2WA9 A;  1R6Q C;  1MBU C;  3GQ0 A;  4YKA A;  1MBX C;  4YJX A;  1RQU A;  3G3P A;  3O2B A;  1MBV B;  3GW1 A;  3O2O A;  2WA8 A;  1R6O C;  4YJM A;  3G19 A;  2W9R A;  1MG9 A;  1CTF A;  3O1F A;  3DNJ A; 
#chains in the Genus database with same CATH topology
 5M19 A;  3CF5 W;  3W7U A;  1VQ8 W;  1VQM W;  3W7S A;  5GAH a;  3I56 W;  1VQ4 W;  1RQS A;  3CCM W;  3CCS W;  2WA9 A;  3CCU W;  1VQ6 W;  1VQ5 W;  1KD1 X;  4YJX A;  1RQU A;  5GW7 A;  1YI2 W;  1M1K X;  2OTL W;  3G4S W;  3CCQ W;  2OTJ W;  2WA8 A;  3ZFZ A;  1QVF V;  5DM6 W;  5M1A A;  5M18 A;  1VQN W;  1YJN W;  4WFB W;  3DNJ A;  4IOC W;  4BL2 A;  1LZW A;  1DD3 A;  3D3I A;  4WCE W;  1DD4 A;  3G6E W;  4IOA W;  4DKI A;  3I55 W;  1M90 X;  1BXY A;  4BL3 A;  1NJI X;  2QEX W;  1Q81 X;  5GAD a;  3PIP W;  2ZJR W;  1MBX C;  1Q7Y X;  1VQP W;  4WF9 W;  3G3P A;  1MWU A;  3O2B A;  1MBV B;  1YIJ W;  3GW1 A;  4CJN A;  1KQS V;  5CA3 A;  2W9R A;  4WFN W;  5JVH W;  4WFA W;  1MWS A;  3G71 W;  1K8A X;  1N8R X;  1YJ9 W;  3PIO W;  3O2H A;  4IO9 W;  3W7X A;  1RQV A;  3CMA W;  2ZJP W;  3CC4 W;  1YHQ W;  5GAG a;  4YKA A;  1YIT W;  3CCL W;  1VQ9 W;  3ZG0 A;  3DLL W;  3CCE W;  5HL7 W;  3CC7 W;  1VQO W;  3O2O A;  1R6O C;  3G19 A;  3CCV W;  1Q86 X;  1MG9 A;  3CCJ W;  1CTF A;  3O1F A;  1QVG V;  3W7W A;  1YJW W;  3G1B A;  1S72 W;  5GAE a;  1JJ2 V;  3CC2 W;  3GQ1 A;  1K73 X;  2ZJQ W;  3CPW V;  3CCR W;  3O1F B;  1W2B V;  3ZG5 A;  1K9M X;  3W7T A;  1VQQ A;  5DM7 W;  1R6Q C;  3OW2 V;  1MBU C;  3GQ0 A;  1KC8 X;  1MWR A;  3CD6 W;  1VQL W;  4CPK A;  1Q82 X;  4UY8 Z;  3J7Z Z;  4YJM A;  1MWT A;  3CME W;  1VQ7 W;  5JVG W;  4U67 W;  1VQK W;  2QA4 W;  3CXC V; 
#chains in the Genus database with same CATH homology
 3G1B A;  1LZW A;  1DD3 A;  3GQ1 A;  1DD4 A;  1RQS A;  3O2H A;  3O1F B;  1RQV A;  2WA9 A;  1R6Q C;  1MBU C;  3GQ0 A;  4YKA A;  1MBX C;  4YJX A;  1RQU A;  3G3P A;  3O2B A;  1MBV B;  3GW1 A;  3O2O A;  2WA8 A;  1R6O C;  4YJM A;  3G19 A;  2W9R A;  1MG9 A;  1CTF A;  3O1F A;  3DNJ A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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