1GU9A

Crystal structure of mycobacterium tuberculosis alkylperoxidase ahpd
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
172
structure length
172
Chain Sequence
EKLKAALPEYAKDIKLNLSSITRSSVLDQEQLWGTLLASAAATRNPQVLADIGAEATDHLSAAARHAALGAAAIMGMNNVFYRGRGFLEGRYDDLRPGLRMNIIANPGIPKANFELWSFAVSAINGCSHCLVAHEHTLRTVGVDREAIFEALKAAAIVSGVAQALATIEALS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Crystal Structure of Mycobacterium Tuberculosis Alkylhydroperoxidase Ahpd, a Potential Target for Antitubercular Drug Design
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Mycobacterium tuberculosis
molecule keywords ALKYLHYDROPEROXIDASE D
total genus 62
structure length 172
sequence length 172
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date 2002-01-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 1gu9A00
5DIPA 1ME5A 3D7IA 4G9QA 3C1LA 2AF7A 1VKEA 2GMYA 2PFXA 2Q0TA 1KNCA 2PRRA 2CWQA 2IJCA 3LVYA 2OYOA 1LW1A 5DIKA 2O4DA 1GU9A 3BEYA 1P8CA 2QEUA 2OUWA
chains in the Genus database with same CATH superfamily
5DIPA 1ME5A 3AA7A 5ADXK 3AAEA 3D7IA 4G9QA 3C1LA 2AF7A 1VKEA 2GMYA 2PFXA 2Q0TA 1KNCA 2ES9A 3LK41 5AFUK 3LK2A 3LK3A 2PRRA 2CWQA 3AA6A 2IJCA 1IZNA 3AA0A 3LVYA 2KZ7A 3AAAA 2OYOA 1LW1A 5DIKA 2O4DA 1GU9A 3BEYA 3AA1A 4AKRA 1P8CA 2QEUA 2OUWA 2JN8A 2KXPA
chains in the Genus database with same CATH topology
5DIPA 1ME5A 3AA7A 5ADXK 3AAEA 3D7IA 4G9QA 3C1LA 2AF7A 1VKEA 2GMYA 2PFXA 2Q0TA 1KNCA 2ES9A 3LK41 5AFUK 3LK2A 3LK3A 2PRRA 2CWQA 3AA6A 2IJCA 1IZNA 3AA0A 3LVYA 2KZ7A 3AAAA 2OYOA 1LW1A 5DIKA 2O4DA 1GU9A 3BEYA 3AA1A 4AKRA 1P8CA 2QEUA 2OUWA 2JN8A 2KXPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DIP A;  1ME5 A;  3D7I A;  4G9Q A;  3C1L A;  2AF7 A;  1VKE A;  2GMY A;  2PFX A;  2Q0T A;  1KNC A;  2PRR A;  2CWQ A;  2IJC A;  3LVY A;  2OYO A;  1LW1 A;  5DIK A;  2O4D A;  1GU9 A;  3BEY A;  1P8C A;  2QEU A;  2OUW A; 
#chains in the Genus database with same CATH topology
 5DIP A;  1ME5 A;  3AA7 A;  5ADX K;  3AAE A;  3D7I A;  4G9Q A;  3C1L A;  2AF7 A;  1VKE A;  2GMY A;  2PFX A;  2Q0T A;  1KNC A;  2ES9 A;  3LK4 1;  5AFU K;  3LK2 A;  3LK3 A;  2PRR A;  2CWQ A;  3AA6 A;  2IJC A;  1IZN A;  3AA0 A;  3LVY A;  2KZ7 A;  3AAA A;  2OYO A;  1LW1 A;  5DIK A;  2O4D A;  1GU9 A;  3BEY A;  3AA1 A;  4AKR A;  1P8C A;  2QEU A;  2OUW A;  2JN8 A;  2KXP A; 
#chains in the Genus database with same CATH homology
 5DIP A;  1ME5 A;  3AA7 A;  5ADX K;  3AAE A;  3D7I A;  4G9Q A;  3C1L A;  2AF7 A;  1VKE A;  2GMY A;  2PFX A;  2Q0T A;  1KNC A;  2ES9 A;  3LK4 1;  5AFU K;  3LK2 A;  3LK3 A;  2PRR A;  2CWQ A;  3AA6 A;  2IJC A;  1IZN A;  3AA0 A;  3LVY A;  2KZ7 A;  3AAA A;  2OYO A;  1LW1 A;  5DIK A;  2O4D A;  1GU9 A;  3BEY A;  3AA1 A;  4AKR A;  1P8C A;  2QEU A;  2OUW A;  2JN8 A;  2KXP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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