3AA1A

Crystal structure of actin capping protein in complex with the cp-binding motif derived from ckip-1
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
271
structure length
271
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords F-actin-capping protein subunit alpha-1
publication title Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
pubmed doi rcsb
source organism Gallus gallus
total genus 83
structure length 271
sequence length 271
ec nomenclature
pdb deposition date 2009-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aa1A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aa1A02
3AAAA 3AAAB 5AFUK 3LK2A 3LK2B 5ADXL 1IZNA 1IZNB 2KZ7A 2KZ7B 3AA0A 3AA0B 2KXPA 2KXPB 5AFUL 3LK42 5ADXK 4AKRA 4AKRB 3LK41 3AA6A 3AA6B 3AA7A 3LK3A 3AA7B 3LK3B 3AAEA 3AAEB 3AA1A 3AA1B
chains in the Genus database with same CATH superfamily
3AAAA 2JN8A 4FUVA 1OPFA 2YPVA 3O0EA 4RLBA 5H2FO 4CTDA 5ADXK 1ME5A 4O3WA 1P8CA 1MM4A 4K3BA 5PRNA 3T0SA 2R89A 2XE5A 2F1VA 2N2LA 4U9CA 5B5EO 3G7GA 3SY9A 3VZTX 4LSIA 2X9KA 2J4UP 3BRZA 2CWQA 2M06A 3AAAB 2QTKA 4G9QA 3A0BO 1IZNA 1PRNA 3POUA 1QJPA 3HOLA 3WI4A 6PRNA 3NJTA 4GF4A 3LK42 4RLCA 4AZLA 2M07A 3AA7A 2ZLDA 4PUXA 4QQ1A 2FGQX 1MM5A 3K19A 4GHBA 1E54A 3T24A 2O4DA 3BS0A 2Y0HA 2XTRA 2PRRA 5FVNA 3SYBA 7PRNA 4C00A 3AA6A 2LFUA 4FSPA 4IL6O 2ZFGA 1IZNB 1BT9A 4AUIA 2R88A 1HXUA 1T16A 5IYUA 4PR7A 3VE1A 2ES9A 1T1LA 3UU2A 2F1TA 5GTIO 3SY7A 4RJWA 2KDYA 3DA4A 2FGRA 1HXTA 2LHFA 4N75A 3LK3A 3AA7B 4N59A 4FMSA 2JMMA 3AA1A 3PQUA 4KR8A 3HWBA 3EMNX 4O4UA 1QJ9A 3HW9A 1S5LO 5DIPA 3DZMA 2KC0A 5AFUL 4KRAA 1GFMA 5DL6A 5DL5A 4GCQA 3PORA 4LSHA 3AA6B 2XE2A 2W81C 5DIKA 3LK2A 4FT6A 4D5UA 1QJ8A 3C1LA 5EE2A 1GFNA 1ZHXA 1ZHTA 3FYXA 2N2MA 3BRYA 4UB8O 3V8UA 2XE1A 4XNKA 1P4TA 3QRAA 2R4OA 4RJXA 2XTQA 3LK3B 2GE4A 5G26A 3VY8X 4FRXA 3AA1B 5D5DA 1ZHYA 2Q0TA 2AXTO 2OMFA 2ERVA 5GV0A 4FSOA 4FRTA 4O49A 3WU2O 4GCSA 2R8AA 3A2SX 4JCHA 2PFXA 4AYMC 4LSEA 4FQEA 2XE3A 2XG6A 5G3AA 3VZWX 5G39A 2K0LA 2R4NA 3PRNA 1BXWA 3LK2B 3JTYA 4B61A 3KVDD 3PGUA 3AA0A 2KXPA 4FZNA 1GFQA 2OYOA 1THQA 3LVYA 4AKRA 2AF7A 3RBHA 2XMXA 1HXXA 1BH3A 5KAIO 3POQA 1KNCA 4O4XA 5DL8A 4E1SA 3NSGA 3LK41 4GCPA 5DL7A 4XNLA 3AAEA 4FZMA 5AFUK 5E79O 5KAFO 2F1CX 1Q9FA 1GFOA 3T20A 3AA0B 2KXPB 4UB6O 5T5FA 1G90A 4PJ0O 3BEYA 4AKRB 1ZHWA 4KR4A 4AFKA 2X27X 4F4BA 2Y2XA 3DA3A 2PRNA 2Y7SA 3DWOX 1YS5A 1H6S1 2WVPA 4AKMA 4AYEC 3PQSA 4O3YA 2K4TA 1VKEA 3JCUO 4N74A 4K3CA 3POXA 3VY9X 4C69X 1LW1A 2YNKA 3TZGA 4FESA 3AAEB 4AYDC 5G38A 2O4VA 2R4LA 5ADXL 8PRNA 3D7IA 2Y0LA 2J1NA 3WI5A 4G76A 1MPFA 4C4VA 4Z3TA 4FOZA 2MHLA 3GP6A 3VE2A 3UPGA 3HOEA 2WJRA 2PORA 1Q9GA 2OUWA 1OSMA 4LSFA 1GU9A 4O3XB 2KZ7A 4E1TA 2IWVA 1GFPA 4G75A 2JQYA 5JDPA 3VZUX 4AYNA 4FZLA 2ODJA 2MNHA 1PHOA 2W80C 3C5OA 3PF1A 2IWWA 1ORMA 4O3ZA 5GTHO 5TISO 3QRCA 3PGRA 4C4VB 4RL9A 3UAQA 2Y0KA 3PGSA 3SZDA 4BUMX 2WJQA 3KZIO 2IJCA 2R4PA 2QEUA 4D65A 5B66O 2GMYA 4JFBA 2KZ7B 3SZVA 4AYID 1ZHZA 3A0HO 3SYSA 4N58A 4D64A 3DWNA
chains in the Genus database with same CATH topology
3PRNA 3AAAA 2O4VA 1BXWA 2JN8A 4FUVA 2ZFGA 3LK2B 8PRNA 3JTYA 5ADXL 1IZNB 1BT9A 1OPFA 3D7IA 4AUIA 2YPVA 4B61A 1HXUA 5IYUA 2Y0LA 3KVDD 3O0EA 4RLBA 3AA0A 3VE1A 2ES9A 2J1NA 3WI5A 2KXPA 1MPFA 4G76A 3UU2A 4Z3TA 2F1TA 4FZNA 1GFQA 4FOZA 2OYOA 1THQA 3LVYA 3SY7A 2MHLA 4RJWA 2KDYA 5ADXK 3GP6A 4AKRA 3VE2A 3DA4A 2AF7A 1ME5A 2FGRA 3UPGA 1HXTA 2LHFA 4O3WA 2XMXA 3RBHA 1P8CA 3HOEA 1HXXA 3LK3A 3AA7B 1MM4A 4N59A 4FMSA 5PRNA 3T0SA 2JMMA 3AA1A 2XE5A 2F1VA 1BH3A 1Q9GA 2OUWA 2PORA 1OSMA 3POQA 3PQUA 4KR8A 2N2LA 3HWBA 4LSFA 4U9CA 1KNCA 1GU9A 3EMNX 4O3XB 4O4UA 2KZ7A 4O4XA 4E1TA 1QJ9A 1GFPA 5DL8A 4G75A 3G7GA 4E1SA 3SY9A 5JDPA 3HW9A 3VZUX 5DIPA 2KC0A 4AYNA 5AFUL 4FZLA 4KRAA 3VZTX 4LSIA 2ODJA 1GFMA 5DL6A 3NSGA 5DL5A 3LK41 4GCQA 2J4UP 2CWQA 3PORA 2MNHA 4LSHA 4GCPA 1PHOA 3AA6B 5DL7A 4XNLA 2XE2A 2M06A 3AAEA 4FZMA 2W81C 2W80C 3AAAB 2QTKA 5DIKA 3C5OA 4G9QA 5AFUK 3LK2A 4FT6A 4D5UA 1IZNA 1ORMA 1QJ8A 3C1LA 1Q9FA 1PRNA 3POUA 1GFNA 4O3ZA 1GFOA 5EE2A 3T20A 1QJPA 1ZHXA 3QRCA 3AA0B 1ZHTA 2KXPB 1G90A 5T5FA 3FYXA 3HOLA 4RL9A 2N2MA 3WI4A 6PRNA 3V8UA 2XE1A 4GF4A 3LK42 2Y0KA 4XNKA 3UAQA 3BEYA 1P4TA 4RLCA 4AKRB 4AZLA 3QRAA 1ZHWA 2M07A 3SZDA 4BUMX 4RJXA 3AA7A 2XTQA 2GE4A 2ZLDA 3LK3B 4KR4A 4FRXA 2X27X 5G26A 2Y2XA 4PUXA 3DA3A 2FGQX 3AA1B 4QQ1A 5D5DA 2IJCA 4F4BA 1ZHYA 2PRNA 2Y7SA 2Q0TA 2QEUA 1YS5A 1H6S1 1MM5A 4D65A 2OMFA 2GMYA 3K19A 2ERVA 4AKMA 4GHBA 5GV0A 4FSOA 4AFKA 4AYEC 3PQSA 4JFBA 2KZ7B 3SZVA 1E54A 4O3YA 4FRTA 4AYID 3T24A 2O4DA 4O49A 2Y0HA 1ZHZA 2K4TA 1VKEA 4GCSA 2XTRA 2PRRA 4FESA 3A2SX 4JCHA 3POXA 3VY9X 5FVNA 2PFXA 3SYBA 4C69X 7PRNA 4AYMC 3VY8X 4LSEA 3SYSA 2XE3A 2XG6A 3VZWX 3AA6A 1LW1A 2K0LA 2YNKA 4N58A 4D64A 3TZGA 2LFUA 3AAEB 4AYDC 4FSPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AAA A;  3AAA B;  5AFU K;  3LK2 A;  3LK2 B;  5ADX L;  1IZN A;  1IZN B;  2KZ7 A;  2KZ7 B;  3AA0 A;  3AA0 B;  2KXP A;  2KXP B;  5AFU L;  3LK4 2;  5ADX K;  4AKR A;  4AKR B;  3LK4 1;  3AA6 A;  3AA6 B;  3AA7 A;  3LK3 A;  3AA7 B;  3LK3 B;  3AAE A;  3AAE B;  3AA1 A;  3AA1 B; 
#chains in the Genus database with same CATH topology
 3AAA A;  2JN8 A;  4FUV A;  1OPF A;  2YPV A;  3O0E A;  4RLB A;  5H2F O;  4CTD A;  5ADX K;  1ME5 A;  4O3W A;  1P8C A;  1MM4 A;  4K3B A;  5PRN A;  3T0S A;  2R89 A;  2XE5 A;  2F1V A;  2N2L A;  4U9C A;  5B5E O;  3G7G A;  3SY9 A;  3VZT X;  4LSI A;  2X9K A;  2J4U P;  3BRZ A;  2CWQ A;  2M06 A;  3AAA B;  2QTK A;  4G9Q A;  3A0B O;  1IZN A;  1PRN A;  3POU A;  1QJP A;  3HOL A;  3WI4 A;  6PRN A;  3NJT A;  4GF4 A;  3LK4 2;  4RLC A;  4AZL A;  2M07 A;  3AA7 A;  2ZLD A;  4PUX A;  4QQ1 A;  2FGQ X;  1MM5 A;  3K19 A;  4GHB A;  1E54 A;  3T24 A;  2O4D A;  3BS0 A;  2Y0H A;  2XTR A;  2PRR A;  5FVN A;  3SYB A;  7PRN A;  4C00 A;  3AA6 A;  2LFU A;  4FSP A;  4IL6 O;  2ZFG A;  1IZN B;  1BT9 A;  4AUI A;  2R88 A;  1HXU A;  1T16 A;  5IYU A;  4PR7 A;  3VE1 A;  2ES9 A;  1T1L A;  3UU2 A;  2F1T A;  5GTI O;  3SY7 A;  4RJW A;  2KDY A;  3DA4 A;  2FGR A;  1HXT A;  2LHF A;  4N75 A;  3LK3 A;  3AA7 B;  4N59 A;  4FMS A;  2JMM A;  3AA1 A;  3PQU A;  4KR8 A;  3HWB A;  3EMN X;  4O4U A;  1QJ9 A;  3HW9 A;  1S5L O;  5DIP A;  3DZM A;  2KC0 A;  5AFU L;  4KRA A;  1GFM A;  5DL6 A;  5DL5 A;  4GCQ A;  3POR A;  4LSH A;  3AA6 B;  2XE2 A;  2W81 C;  5DIK A;  3LK2 A;  4FT6 A;  4D5U A;  1QJ8 A;  3C1L A;  5EE2 A;  1GFN A;  1ZHX A;  1ZHT A;  3FYX A;  2N2M A;  3BRY A;  4UB8 O;  3V8U A;  2XE1 A;  4XNK A;  1P4T A;  3QRA A;  2R4O A;  4RJX A;  2XTQ A;  3LK3 B;  2GE4 A;  5G26 A;  3VY8 X;  4FRX A;  3AA1 B;  5D5D A;  1ZHY A;  2Q0T A;  2AXT O;  2OMF A;  2ERV A;  5GV0 A;  4FSO A;  4FRT A;  4O49 A;  3WU2 O;  4GCS A;  2R8A A;  3A2S X;  4JCH A;  2PFX A;  4AYM C;  4LSE A;  4FQE A;  2XE3 A;  2XG6 A;  5G3A A;  3VZW X;  5G39 A;  2K0L A;  2R4N A;  3PRN A;  1BXW A;  3LK2 B;  3JTY A;  4B61 A;  3KVD D;  3PGU A;  3AA0 A;  2KXP A;  4FZN A;  1GFQ A;  2OYO A;  1THQ A;  3LVY A;  4AKR A;  2AF7 A;  3RBH A;  2XMX A;  1HXX A;  1BH3 A;  5KAI O;  3POQ A;  1KNC A;  4O4X A;  5DL8 A;  4E1S A;  3NSG A;  3LK4 1;  4GCP A;  5DL7 A;  4XNL A;  3AAE A;  4FZM A;  5AFU K;  5E79 O;  5KAF O;  2F1C X;  1Q9F A;  1GFO A;  3T20 A;  3AA0 B;  2KXP B;  4UB6 O;  5T5F A;  1G90 A;  4PJ0 O;  3BEY A;  4AKR B;  1ZHW A;  4KR4 A;  4AFK A;  2X27 X;  4F4B A;  2Y2X A;  3DA3 A;  2PRN A;  2Y7S A;  3DWO X;  1YS5 A;  1H6S 1;  2WVP A;  4AKM A;  4AYE C;  3PQS A;  4O3Y A;  2K4T A;  1VKE A;  3JCU O;  4N74 A;  4K3C A;  3POX A;  3VY9 X;  4C69 X;  1LW1 A;  2YNK A;  3TZG A;  4FES A;  3AAE B;  4AYD C;  5G38 A;  2O4V A;  2R4L A;  5ADX L;  8PRN A;  3D7I A;  2Y0L A;  2J1N A;  3WI5 A;  4G76 A;  1MPF A;  4C4V A;  4Z3T A;  4FOZ A;  2MHL A;  3GP6 A;  3VE2 A;  3UPG A;  3HOE A;  2WJR A;  2POR A;  1Q9G A;  2OUW A;  1OSM A;  4LSF A;  1GU9 A;  4O3X B;  2KZ7 A;  4E1T A;  2IWV A;  1GFP A;  4G75 A;  2JQY A;  5JDP A;  3VZU X;  4AYN A;  4FZL A;  2ODJ A;  2MNH A;  1PHO A;  2W80 C;  3C5O A;  3PF1 A;  2IWW A;  1ORM A;  4O3Z A;  5GTH O;  5TIS O;  3QRC A;  3PGR A;  4C4V B;  4RL9 A;  3UAQ A;  2Y0K A;  3PGS A;  3SZD A;  4BUM X;  2WJQ A;  3KZI O;  2IJC A;  2R4P A;  2QEU A;  4D65 A;  5B66 O;  2GMY A;  4JFB A;  2KZ7 B;  3SZV A;  4AYI D;  1ZHZ A;  3A0H O;  3SYS A;  4N58 A;  4D64 A;  3DWN A; 
#chains in the Genus database with same CATH homology
 3PRN A;  3AAA A;  2O4V A;  1BXW A;  2JN8 A;  4FUV A;  2ZFG A;  3LK2 B;  8PRN A;  3JTY A;  5ADX L;  1IZN B;  1BT9 A;  1OPF A;  3D7I A;  4AUI A;  2YPV A;  4B61 A;  1HXU A;  5IYU A;  2Y0L A;  3KVD D;  3O0E A;  4RLB A;  3AA0 A;  3VE1 A;  2ES9 A;  2J1N A;  3WI5 A;  2KXP A;  1MPF A;  4G76 A;  3UU2 A;  4Z3T A;  2F1T A;  4FZN A;  1GFQ A;  4FOZ A;  2OYO A;  1THQ A;  3LVY A;  3SY7 A;  2MHL A;  4RJW A;  2KDY A;  5ADX K;  3GP6 A;  4AKR A;  3VE2 A;  3DA4 A;  2AF7 A;  1ME5 A;  2FGR A;  3UPG A;  1HXT A;  2LHF A;  4O3W A;  2XMX A;  3RBH A;  1P8C A;  3HOE A;  1HXX A;  3LK3 A;  3AA7 B;  1MM4 A;  4N59 A;  4FMS A;  5PRN A;  3T0S A;  2JMM A;  3AA1 A;  2XE5 A;  2F1V A;  1BH3 A;  1Q9G A;  2OUW A;  2POR A;  1OSM A;  3POQ A;  3PQU A;  4KR8 A;  2N2L A;  3HWB A;  4LSF A;  4U9C A;  1KNC A;  1GU9 A;  3EMN X;  4O3X B;  4O4U A;  2KZ7 A;  4O4X A;  4E1T A;  1QJ9 A;  1GFP A;  5DL8 A;  4G75 A;  3G7G A;  4E1S A;  3SY9 A;  5JDP A;  3HW9 A;  3VZU X;  5DIP A;  2KC0 A;  4AYN A;  5AFU L;  4FZL A;  4KRA A;  3VZT X;  4LSI A;  2ODJ A;  1GFM A;  5DL6 A;  3NSG A;  5DL5 A;  3LK4 1;  4GCQ A;  2J4U P;  2CWQ A;  3POR A;  2MNH A;  4LSH A;  4GCP A;  1PHO A;  3AA6 B;  5DL7 A;  4XNL A;  2XE2 A;  2M06 A;  3AAE A;  4FZM A;  2W81 C;  2W80 C;  3AAA B;  2QTK A;  5DIK A;  3C5O A;  4G9Q A;  5AFU K;  3LK2 A;  4FT6 A;  4D5U A;  1IZN A;  1ORM A;  1QJ8 A;  3C1L A;  1Q9F A;  1PRN A;  3POU A;  1GFN A;  4O3Z A;  1GFO A;  5EE2 A;  3T20 A;  1QJP A;  1ZHX A;  3QRC A;  3AA0 B;  1ZHT A;  2KXP B;  1G90 A;  5T5F A;  3FYX A;  3HOL A;  4RL9 A;  2N2M A;  3WI4 A;  6PRN A;  3V8U A;  2XE1 A;  4GF4 A;  3LK4 2;  2Y0K A;  4XNK A;  3UAQ A;  3BEY A;  1P4T A;  4RLC A;  4AKR B;  4AZL A;  3QRA A;  1ZHW A;  2M07 A;  3SZD A;  4BUM X;  4RJX A;  3AA7 A;  2XTQ A;  2GE4 A;  2ZLD A;  3LK3 B;  4KR4 A;  4FRX A;  2X27 X;  5G26 A;  2Y2X A;  4PUX A;  3DA3 A;  2FGQ X;  3AA1 B;  4QQ1 A;  5D5D A;  2IJC A;  4F4B A;  1ZHY A;  2PRN A;  2Y7S A;  2Q0T A;  2QEU A;  1YS5 A;  1H6S 1;  1MM5 A;  4D65 A;  2OMF A;  2GMY A;  3K19 A;  2ERV A;  4AKM A;  4GHB A;  5GV0 A;  4FSO A;  4AFK A;  4AYE C;  3PQS A;  4JFB A;  2KZ7 B;  3SZV A;  1E54 A;  4O3Y A;  4FRT A;  4AYI D;  3T24 A;  2O4D A;  4O49 A;  2Y0H A;  1ZHZ A;  2K4T A;  1VKE A;  4GCS A;  2XTR A;  2PRR A;  4FES A;  3A2S X;  4JCH A;  3POX A;  3VY9 X;  5FVN A;  2PFX A;  3SYB A;  4C69 X;  7PRN A;  4AYM C;  3VY8 X;  4LSE A;  3SYS A;  2XE3 A;  2XG6 A;  3VZW X;  3AA6 A;  1LW1 A;  2K0L A;  2YNK A;  4N58 A;  4D64 A;  3TZG A;  2LFU A;  3AAE B;  4AYD C;  4FSP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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