3AA1A

Crystal structure of actin capping protein in complex with the cp-binding motif derived from ckip-1
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
271
structure length
271
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
pubmed doi rcsb
source organism Gallus gallus
molecule tags Protein binding
molecule keywords F-actin-capping protein subunit alpha-1
total genus 83
structure length 271
sequence length 271
ec nomenclature
pdb deposition date 2009-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aa1A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aa1A02
2KXPA 3LK2A 1IZNB 4AKRA 3LK3A 5ADXL 5AFUK 2KZ7B 5ADXK 3AAAA 3AA1A 3AA7B 5AFUL 3LK2B 1IZNA 4AKRB 3AAEB 2KZ7A 3AA1B 3AAAB 3AA0A 3AA6A 3AAEA 3LK41 2KXPB 3AA0B 3LK42 3LK3B 3AA6B 3AA7A
chains in the Genus database with same CATH superfamily
5DL7A 1GU9A 1ZHZA 2YNKA 2N2LA 5DL5A 3VZUX 2PORA 4D5UA 4C4VA 1ZHTA 6PRNA 1GFPA 4FSOA 2F1TA 5ADXL 3QRAA 3AA1A 2JQYA 3DWOX 4XNKA 5G39A 4FMSA 3LK2B 1IZNA 4G76A 4PJ0O 2Y0LA 3QRCA 3A0BO 4FSPA 4GCPA 4KRAA 3BS0A 4RJWA 4XNLA 3WI4A 7PRNA 3T20A 2R8AA 3POQA 4E1TA 5G3AA 5H2FO 3AA0A 2AXTO 2FGRA 4O3ZA 4AUIA 3UU2A 3AA6A 5G38A 3VY8X 3LK41 2O4DA 5KAFO 1PRNA 2FGQX 2M07A 1ZHXA 3RBHA 2QEUA 2WJQA 1G90A 5GTIO 1LW1A 1VKEA 3LK42 4C69X 2YPVA 4LSFA 3LK3B 4Z3TA 2IWWA 2MNHA 2XE1A 4FT6A 1GFMA 4LSIA 2Q0TA 3PQSA 5G26A 3AA7A 3DWNA 3FYXA 1BT9A 2KXPA 3C1LA 4AKRA 3PRNA 3K19A 4GCSA 4KR8A 1ME5A 4AYDC 4JCHA 1GFQA 1ORMA 5T5FA 5DL6A 3PGUA 2X9KA 3SYBA 5ADXK 3AAAA 3EMNX 2CWQA 5PRNA 3TZGA 5AFUL 4O4UA 1HXXA 2Y0KA 5B5EO 4C4VB 2GMYA 3PGRA 3AAEB 3VY9X 1QJ9A 3HOEA 3VE2A 2OUWA 3AA1B 3HW9A 4K3BA 4O3WA 3HOLA 4AYEC 2M06A 3A2SX 3SZVA 1GFOA 2LFUA 4G75A 5IYUA 2XE2A 2PFXA 2R4OA 1BH3A 2KC0A 1ZHWA 2WJRA 2ZFGA 3AA0B 4FRTA 2JN8A 4O4XA 4RLBA 4UB6O 5E79O 2MHLA 2XTRA 3DA4A 3O0EA 1QJ8A 5DL8A 3AA6B 3WI5A 2J4UP 4FZNA 2K0LA 2R88A 4IL6O 5KAIO 2PRRA 2O4VA 5FVNA 4N75A 3C5OA 3A0HO 3G7GA 3NSGA 4FRXA 3UPGA 1GFNA 1H6S1 2Y2XA 1ZHYA 3LK3A 4F4BA 4FQEA 4RL9A 3T0SA 2GE4A 4FZMA 2KZ7B 4LSHA 5DIPA 1S5LO 8PRNA 3AA7B 1P8CA 4LSEA 3SZDA 2XMXA 5B66O 4AKRB 3T24A 2OMFA 2R4LA 2X27X 4FOZA 1P4TA 4K3CA 4B61A 4U9CA 4FZLA 2Y0HA 3PF1A 3SYSA 4RLCA 1MPFA 2PRNA 4N58A 5GTHO 2AF7A 3AAAB 2W80C 4N74A 3KVDD 5GV0A 3PGSA 2Y7SA 4O3YA 2R4NA 1QJPA 3AAEA 3LVYA 4GHBA 4E1SA 1YS5A 2OYOA 2JMMA 1BXWA 1HXTA 2K4TA 2KDYA 3POUA 3D7IA 2QTKA 4FESA 1OSMA 5TISO 4AKMA 4CTDA 4D65A 1T1LA 1Q9FA 1THQA 2XE5A 4FUVA 2ZLDA 4GCQA 4G9QA 3HWBA 5D5DA 3SY9A 1PHOA 4AZLA 3BEYA 3LK2A 1IZNB 3DA3A 3PORA 4O3XB 4JFBA 2F1CX 4D64A 5JDPA 3JTYA 5AFUK 2ES9A 1T16A 3NJTA 2LHFA 4KR4A 4UB8O 4PR7A 2ERVA 1Q9GA 2XTQA 2IWVA 4PUXA 3V8UA 1OPFA 4O49A 2XG6A 3BRZA 4GF4A 4AYNA 5DIKA 2KZ7A 2XE3A 3VZWX 3WU2O 2ODJA 1MM4A 3DZMA 4AFKA 4N59A 2IJCA 1MM5A 2R89A 4RJXA 4AYID 3VE1A 2WVPA 3BRYA 3POXA 3JCUO 3PQUA 2R4PA 1E54A 2W81C 2N2MA 5EE2A 2KXPB 3KZIO 4C00A 3GP6A 2J1NA 4QQ1A 3UAQA 4AYMC 4BUMX 3SY7A 1KNCA 3VZTX 2F1VA 1HXUA
chains in the Genus database with same CATH topology
5DL7A 1GU9A 1ZHZA 2YNKA 2N2LA 5DL5A 3VZUX 2PORA 4D5UA 1ZHTA 6PRNA 1GFPA 4FSOA 2F1TA 5ADXL 3QRAA 3AA1A 4XNKA 4FMSA 3LK2B 1IZNA 4G76A 2Y0LA 3QRCA 4FSPA 4GCPA 4KRAA 4RJWA 4XNLA 3WI4A 7PRNA 3T20A 3POQA 4E1TA 3AA0A 2FGRA 4O3ZA 4AUIA 3UU2A 3AA6A 3VY8X 3LK41 2O4DA 1PRNA 2FGQX 2M07A 1ZHXA 3RBHA 2QEUA 1G90A 1LW1A 1VKEA 3LK42 4C69X 2YPVA 4LSFA 3LK3B 4Z3TA 2MNHA 2XE1A 4FT6A 1GFMA 4LSIA 2Q0TA 3PQSA 5G26A 3AA7A 3FYXA 1BT9A 2KXPA 3C1LA 4AKRA 3PRNA 3K19A 4GCSA 4KR8A 1ME5A 4AYDC 4JCHA 1GFQA 1ORMA 5T5FA 5DL6A 3SYBA 5ADXK 3AAAA 3EMNX 2CWQA 5PRNA 3TZGA 5AFUL 4O4UA 1HXXA 2Y0KA 2GMYA 3AAEB 3VY9X 1QJ9A 3HOEA 3VE2A 2OUWA 3AA1B 3HW9A 4O3WA 3HOLA 4AYEC 2M06A 3A2SX 3SZVA 1GFOA 2LFUA 4G75A 5IYUA 2XE2A 2PFXA 1BH3A 2KC0A 1ZHWA 2ZFGA 3AA0B 4FRTA 3SY7A 2JN8A 4O4XA 4RLBA 2J4UP 2MHLA 2XTRA 3DA4A 3O0EA 1QJ8A 5DL8A 3AA6B 3WI5A 4FZNA 2K0LA 2PRRA 2O4VA 5FVNA 3C5OA 3NSGA 3G7GA 4FRXA 3UPGA 1GFNA 1H6S1 2Y2XA 1ZHYA 3LK3A 4F4BA 4RL9A 3T0SA 2GE4A 4FZMA 2KZ7B 4LSHA 5DIPA 8PRNA 3AA7B 1P8CA 4LSEA 3SZDA 2XMXA 4AKRB 3T24A 2OMFA 2X27X 4FOZA 1P4TA 4B61A 4U9CA 4FZLA 2Y0HA 3SYSA 4RLCA 1MPFA 2PRNA 4N58A 2AF7A 3AAAB 2W80C 3KVDD 5GV0A 4O3YA 2Y7SA 1QJPA 3AAEA 3LVYA 4GHBA 4E1SA 1YS5A 2OYOA 2JMMA 1BXWA 1HXTA 2K4TA 2KDYA 3POUA 3D7IA 2QTKA 4FESA 1OSMA 4AKMA 4D65A 1Q9FA 1THQA 2XE5A 4FUVA 2ZLDA 4GCQA 4G9QA 3HWBA 5D5DA 3SY9A 1PHOA 4AZLA 3BEYA 3LK2A 1IZNB 3DA3A 3PORA 4O3XB 4JFBA 4D64A 5JDPA 3JTYA 5AFUK 2ES9A 4KR4A 2LHFA 2ERVA 1Q9GA 2XTQA 4PUXA 3V8UA 1OPFA 4O49A 2XG6A 4GF4A 4AYNA 5DIKA 2KZ7A 2XE3A 3VZWX 2ODJA 1MM4A 4AFKA 4N59A 2IJCA 1MM5A 4RJXA 4AYID 3VE1A 3POXA 3PQUA 1E54A 2W81C 2N2MA 5EE2A 2KXPB 3GP6A 2J1NA 4QQ1A 3UAQA 4AYMC 4BUMX 1KNCA 3VZTX 2F1VA 1HXUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KXP A;  3LK2 A;  1IZN B;  4AKR A;  3LK3 A;  5ADX L;  5AFU K;  2KZ7 B;  5ADX K;  3AAA A;  3AA1 A;  3AA7 B;  5AFU L;  3LK2 B;  1IZN A;  4AKR B;  3AAE B;  2KZ7 A;  3AA1 B;  3AAA B;  3AA0 A;  3AA6 A;  3AAE A;  3LK4 1;  2KXP B;  3AA0 B;  3LK4 2;  3LK3 B;  3AA6 B;  3AA7 A; 
#chains in the Genus database with same CATH topology
 5DL7 A;  1GU9 A;  1ZHZ A;  2YNK A;  2N2L A;  5DL5 A;  3VZU X;  2POR A;  4D5U A;  4C4V A;  1ZHT A;  6PRN A;  1GFP A;  4FSO A;  2F1T A;  5ADX L;  3QRA A;  3AA1 A;  2JQY A;  3DWO X;  4XNK A;  5G39 A;  4FMS A;  3LK2 B;  1IZN A;  4G76 A;  4PJ0 O;  2Y0L A;  3QRC A;  3A0B O;  4FSP A;  4GCP A;  4KRA A;  3BS0 A;  4RJW A;  4XNL A;  3WI4 A;  7PRN A;  3T20 A;  2R8A A;  3POQ A;  4E1T A;  5G3A A;  5H2F O;  3AA0 A;  2AXT O;  2FGR A;  4O3Z A;  4AUI A;  3UU2 A;  3AA6 A;  5G38 A;  3VY8 X;  3LK4 1;  2O4D A;  5KAF O;  1PRN A;  2FGQ X;  2M07 A;  1ZHX A;  3RBH A;  2QEU A;  2WJQ A;  1G90 A;  5GTI O;  1LW1 A;  1VKE A;  3LK4 2;  4C69 X;  2YPV A;  4LSF A;  3LK3 B;  4Z3T A;  2IWW A;  2MNH A;  2XE1 A;  4FT6 A;  1GFM A;  4LSI A;  2Q0T A;  3PQS A;  5G26 A;  3AA7 A;  3DWN A;  3FYX A;  1BT9 A;  2KXP A;  3C1L A;  4AKR A;  3PRN A;  3K19 A;  4GCS A;  4KR8 A;  1ME5 A;  4AYD C;  4JCH A;  1GFQ A;  1ORM A;  5T5F A;  5DL6 A;  3PGU A;  2X9K A;  3SYB A;  5ADX K;  3AAA A;  3EMN X;  2CWQ A;  5PRN A;  3TZG A;  5AFU L;  4O4U A;  1HXX A;  2Y0K A;  5B5E O;  4C4V B;  2GMY A;  3PGR A;  3AAE B;  3VY9 X;  1QJ9 A;  3HOE A;  3VE2 A;  2OUW A;  3AA1 B;  3HW9 A;  4K3B A;  4O3W A;  3HOL A;  4AYE C;  2M06 A;  3A2S X;  3SZV A;  1GFO A;  2LFU A;  4G75 A;  5IYU A;  2XE2 A;  2PFX A;  2R4O A;  1BH3 A;  2KC0 A;  1ZHW A;  2WJR A;  2ZFG A;  3AA0 B;  4FRT A;  2JN8 A;  4O4X A;  4RLB A;  4UB6 O;  5E79 O;  2MHL A;  2XTR A;  3DA4 A;  3O0E A;  1QJ8 A;  5DL8 A;  3AA6 B;  3WI5 A;  2J4U P;  4FZN A;  2K0L A;  2R88 A;  4IL6 O;  5KAI O;  2PRR A;  2O4V A;  5FVN A;  4N75 A;  3C5O A;  3A0H O;  3G7G A;  3NSG A;  4FRX A;  3UPG A;  1GFN A;  1H6S 1;  2Y2X A;  1ZHY A;  3LK3 A;  4F4B A;  4FQE A;  4RL9 A;  3T0S A;  2GE4 A;  4FZM A;  2KZ7 B;  4LSH A;  5DIP A;  1S5L O;  8PRN A;  3AA7 B;  1P8C A;  4LSE A;  3SZD A;  2XMX A;  5B66 O;  4AKR B;  3T24 A;  2OMF A;  2R4L A;  2X27 X;  4FOZ A;  1P4T A;  4K3C A;  4B61 A;  4U9C A;  4FZL A;  2Y0H A;  3PF1 A;  3SYS A;  4RLC A;  1MPF A;  2PRN A;  4N58 A;  5GTH O;  2AF7 A;  3AAA B;  2W80 C;  4N74 A;  3KVD D;  5GV0 A;  3PGS A;  2Y7S A;  4O3Y A;  2R4N A;  1QJP A;  3AAE A;  3LVY A;  4GHB A;  4E1S A;  1YS5 A;  2OYO A;  2JMM A;  1BXW A;  1HXT A;  2K4T A;  2KDY A;  3POU A;  3D7I A;  2QTK A;  4FES A;  1OSM A;  5TIS O;  4AKM A;  4CTD A;  4D65 A;  1T1L A;  1Q9F A;  1THQ A;  2XE5 A;  4FUV A;  2ZLD A;  4GCQ A;  4G9Q A;  3HWB A;  5D5D A;  3SY9 A;  1PHO A;  4AZL A;  3BEY A;  3LK2 A;  1IZN B;  3DA3 A;  3POR A;  4O3X B;  4JFB A;  2F1C X;  4D64 A;  5JDP A;  3JTY A;  5AFU K;  2ES9 A;  1T16 A;  3NJT A;  2LHF A;  4KR4 A;  4UB8 O;  4PR7 A;  2ERV A;  1Q9G A;  2XTQ A;  2IWV A;  4PUX A;  3V8U A;  1OPF A;  4O49 A;  2XG6 A;  3BRZ A;  4GF4 A;  4AYN A;  5DIK A;  2KZ7 A;  2XE3 A;  3VZW X;  3WU2 O;  2ODJ A;  1MM4 A;  3DZM A;  4AFK A;  4N59 A;  2IJC A;  1MM5 A;  2R89 A;  4RJX A;  4AYI D;  3VE1 A;  2WVP A;  3BRY A;  3POX A;  3JCU O;  3PQU A;  2R4P A;  1E54 A;  2W81 C;  2N2M A;  5EE2 A;  2KXP B;  3KZI O;  4C00 A;  3GP6 A;  2J1N A;  4QQ1 A;  3UAQ A;  4AYM C;  4BUM X;  3SY7 A;  1KNC A;  3VZT X;  2F1V A;  1HXU A; 
#chains in the Genus database with same CATH homology
 5DL7 A;  1GU9 A;  1ZHZ A;  2YNK A;  2N2L A;  5DL5 A;  3VZU X;  2POR A;  4D5U A;  1ZHT A;  6PRN A;  1GFP A;  4FSO A;  2F1T A;  5ADX L;  3QRA A;  3AA1 A;  4XNK A;  4FMS A;  3LK2 B;  1IZN A;  4G76 A;  2Y0L A;  3QRC A;  4FSP A;  4GCP A;  4KRA A;  4RJW A;  4XNL A;  3WI4 A;  7PRN A;  3T20 A;  3POQ A;  4E1T A;  3AA0 A;  2FGR A;  4O3Z A;  4AUI A;  3UU2 A;  3AA6 A;  3VY8 X;  3LK4 1;  2O4D A;  1PRN A;  2FGQ X;  2M07 A;  1ZHX A;  3RBH A;  2QEU A;  1G90 A;  1LW1 A;  1VKE A;  3LK4 2;  4C69 X;  2YPV A;  4LSF A;  3LK3 B;  4Z3T A;  2MNH A;  2XE1 A;  4FT6 A;  1GFM A;  4LSI A;  2Q0T A;  3PQS A;  5G26 A;  3AA7 A;  3FYX A;  1BT9 A;  2KXP A;  3C1L A;  4AKR A;  3PRN A;  3K19 A;  4GCS A;  4KR8 A;  1ME5 A;  4AYD C;  4JCH A;  1GFQ A;  1ORM A;  5T5F A;  5DL6 A;  3SYB A;  5ADX K;  3AAA A;  3EMN X;  2CWQ A;  5PRN A;  3TZG A;  5AFU L;  4O4U A;  1HXX A;  2Y0K A;  2GMY A;  3AAE B;  3VY9 X;  1QJ9 A;  3HOE A;  3VE2 A;  2OUW A;  3AA1 B;  3HW9 A;  4O3W A;  3HOL A;  4AYE C;  2M06 A;  3A2S X;  3SZV A;  1GFO A;  2LFU A;  4G75 A;  5IYU A;  2XE2 A;  2PFX A;  1BH3 A;  2KC0 A;  1ZHW A;  2ZFG A;  3AA0 B;  4FRT A;  3SY7 A;  2JN8 A;  4O4X A;  4RLB A;  2J4U P;  2MHL A;  2XTR A;  3DA4 A;  3O0E A;  1QJ8 A;  5DL8 A;  3AA6 B;  3WI5 A;  4FZN A;  2K0L A;  2PRR A;  2O4V A;  5FVN A;  3C5O A;  3NSG A;  3G7G A;  4FRX A;  3UPG A;  1GFN A;  1H6S 1;  2Y2X A;  1ZHY A;  3LK3 A;  4F4B A;  4RL9 A;  3T0S A;  2GE4 A;  4FZM A;  2KZ7 B;  4LSH A;  5DIP A;  8PRN A;  3AA7 B;  1P8C A;  4LSE A;  3SZD A;  2XMX A;  4AKR B;  3T24 A;  2OMF A;  2X27 X;  4FOZ A;  1P4T A;  4B61 A;  4U9C A;  4FZL A;  2Y0H A;  3SYS A;  4RLC A;  1MPF A;  2PRN A;  4N58 A;  2AF7 A;  3AAA B;  2W80 C;  3KVD D;  5GV0 A;  4O3Y A;  2Y7S A;  1QJP A;  3AAE A;  3LVY A;  4GHB A;  4E1S A;  1YS5 A;  2OYO A;  2JMM A;  1BXW A;  1HXT A;  2K4T A;  2KDY A;  3POU A;  3D7I A;  2QTK A;  4FES A;  1OSM A;  4AKM A;  4D65 A;  1Q9F A;  1THQ A;  2XE5 A;  4FUV A;  2ZLD A;  4GCQ A;  4G9Q A;  3HWB A;  5D5D A;  3SY9 A;  1PHO A;  4AZL A;  3BEY A;  3LK2 A;  1IZN B;  3DA3 A;  3POR A;  4O3X B;  4JFB A;  4D64 A;  5JDP A;  3JTY A;  5AFU K;  2ES9 A;  4KR4 A;  2LHF A;  2ERV A;  1Q9G A;  2XTQ A;  4PUX A;  3V8U A;  1OPF A;  4O49 A;  2XG6 A;  4GF4 A;  4AYN A;  5DIK A;  2KZ7 A;  2XE3 A;  3VZW X;  2ODJ A;  1MM4 A;  4AFK A;  4N59 A;  2IJC A;  1MM5 A;  4RJX A;  4AYI D;  3VE1 A;  3POX A;  3PQU A;  1E54 A;  2W81 C;  2N2M A;  5EE2 A;  2KXP B;  3GP6 A;  2J1N A;  4QQ1 A;  3UAQ A;  4AYM C;  4BUM X;  1KNC A;  3VZT X;  2F1V A;  1HXU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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