3AA1A

Crystal structure of actin capping protein in complex with the cp-binding motif derived from ckip-1
Total Genus 83
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
271
structure length
271
Chain Sequence
b'RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSY'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords F-actin-capping protein subunit alpha-1
publication title Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
pubmed doi rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 83
structure length 271
sequence length 271
ec nomenclature
pdb deposition date 2009-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aa1A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aa1A02
2KZ7A 2KXPB 3LK42 2KXPA 5AFUK 5ADXL 3AA6B 3LK3B 3AA6A 3LK3A 3AAAB 5ADXK 3AAAA 3AAEB 1IZNB 3AA1B 3AA7B 3AAEA 1IZNA 3AA1A 3AA7A 3LK2B 3LK41 3AA0B 4AKRB 5AFUL 3LK2A 3AA0A 4AKRA 2KZ7B
chains in the Genus database with same CATH superfamily
1ZHYA 5JDPA 1QJ9A 3HOLA 4FZNA 5PRNA 2K4TA 2FGRA 4AYDC 2OUWA 7PRNA 4G75A 4D5UA 4JCHA 1OPFA 3SYBA 2ERVA 2XMXA 1YS5A 5GTIO 1BXWA 2QTKA 2MNHA 2PORA 2KC0A 3VZWX 4O4UA 3LVYA 2R4LA 2N2LA 1GFMA 4FSOA 3K19A 3LK2A 5TISO 2F1CX 1ZHWA 3T24A 2IWVA 1MM4A 1E54A 2WVPA 4O3YA 2JQYA 2GMYA 4KR8A 2O4DA 4FSPA 5DL7A 3JCUO 4AUIA 3PGSA 2O4VA 2KDYA 3DA4A 5FVNA 4AKRB 4PR7A 5AFUL 1ZHTA 3A0BO 4C69X 5ADXL 2PRNA 4QQ1A 3C1LA 3HW9A 2W80C 3AAAB 2XE2A 1ME5A 1IZNA 4AYID 1GU9A 3LK2B 2ZFGA 3QRAA 4AKMA 3AA0A 3O0EA 1HXUA 2JN8A 1BH3A 2KZ7A 1MM5A 3TZGA 1H6S1 3LK3B 3PGRA 3G7GA 1BT9A 3PQSA 3AA1A 1HXXA 2R4PA 4D64A 3T0SA 4C4VA 8PRNA 4E1TA 2XE5A 5EE2A 2KXPA 4U9CA 3NSGA 3RBHA 1P8CA 3JTYA 2MHLA 2J4UP 1IZNB 2J1NA 2R4NA 3A0HO 1T1LA 2KZ7B 3UPGA 2PFXA 3POQA 5AFUK 1QJPA 3AA6A 5G38A 4FT6A 5ADXK 2M06A 1Q9FA 1GFOA 4KRAA 2XG6A 3VY8X 2Y7SA 3WI4A 2X27X 4C4VB 4AYNA 4GCPA 3HOEA 5D5DA 3DZMA 4FZLA 3VZUX 4GCQA 4FRTA 2WJRA 5DL5A 3PRNA 3WU2O 4FUVA 4RLBA 5G26A 4O3XB 4RLCA 1ORMA 3AAEA 3LK41 4K3CA 4KR4A 3UAQA 2ES9A 4RJWA 2CWQA 3SYSA 5B66O 3SY9A 2YPVA 3BRYA 3QRCA 4AFKA 1OSMA 4N59A 2AF7A 4LSHA 4O3WA 1T16A 5G39A 4GF4A 3SZDA 2XE1A 4O49A 2XE3A 3BRZA 3PF1A 3VZTX 4XNKA 4C00A 3SZVA 1ZHZA 1GFQA 4N75A 1Q9GA 3V8UA 3WI5A 4FOZA 2ZLDA 4GHBA 4RL9A 3AAEB 3GP6A 2ODJA 1G90A 4LSIA 4G9QA 5DL8A 1LW1A 2F1VA 3C5OA 2Y0KA 2PRRA 3EMNX 2X9KA 5GV0A 2YNKA 2OMFA 4G76A 4LSFA 4FESA 3POUA 4PUXA 3FYXA 3DWOX 4BUMX 3AA0B 3VY9X 3KZIO 3DWNA 2GE4A 1PHOA 3PGUA 4K3BA 6PRNA 2IWWA 2Q0TA 4O3ZA 4AZLA 5DIPA 2Y2XA 3KVDD 5DL6A 1ZHXA 3AA1B 3UU2A 1GFPA 2R4OA 4AKRA 2R8AA 3NJTA 2XTRA 1KNCA 1MPFA 2KXPB 4RJXA 3BEYA 2N2MA 1VKEA 4N58A 3DA3A 2LHFA 5KAIO 1HXTA 4LSEA 4PJ0O 2XTQA 3AAAA 1PRNA 5B5EO 4XNLA 3SY7A 5H2FO 5G3AA 4O4XA 4FRXA 3VE2A 1P4TA 5E79O 2F1TA 3HWBA 1QJ8A 2Y0HA 2IJCA 2OYOA 4JFBA 3AA6B 3LK3A 2FGQX 4AYEC 4UB8O 4FMSA 4IL6O 1S5LO 3AA7A 4CTDA 2LFUA 2Y0LA 5GTHO 3PQUA 4UB6O 3T20A 3D7IA 2K0LA 4F4BA 4FQEA 1GFNA 2M07A 4GCSA 3A2SX 2QEUA 5KAFO 2R89A 4D65A 3BS0A 5IYUA 2JMMA 4FZMA 5DIKA 3LK42 4Z3TA 4E1SA 3POXA 2W81C 2WJQA 2R88A 5T5FA 2AXTO 3AA7B 4B61A 1THQA 3PORA 4N74A 4AYMC 3VE1A
chains in the Genus database with same CATH topology
2KZ7A 2XTRA 3SY9A 1KNCA 1MPFA 1ZHYA 1MM5A 2KXPB 2YPVA 4RJXA 1QJ9A 3TZGA 5JDPA 3HOLA 3QRCA 3BEYA 1H6S1 2N2MA 1VKEA 3LK3B 4N58A 4AFKA 3DA3A 2LHFA 1HXTA 1OSMA 4FZNA 5PRNA 4LSEA 4N59A 3G7GA 2K4TA 2XTQA 3AAAA 2AF7A 4LSHA 1BT9A 1PRNA 2FGRA 4AYDC 2OUWA 7PRNA 4XNLA 4O3WA 3PQSA 3SY7A 3AA1A 1HXXA 4G75A 4D5UA 4GF4A 3SZDA 4D64A 2XE1A 4O49A 4JCHA 1OPFA 3T0SA 3SYBA 2XE3A 4O4XA 8PRNA 3VZTX 4FRXA 4XNKA 3VE2A 1P4TA 2ERVA 2F1TA 4E1TA 2XMXA 3SZVA 2XE5A 3HWBA 1ZHZA 2KXPA 1GFQA 1QJ8A 1Q9GA 4U9CA 2Y0HA 5EE2A 3V8UA 2IJCA 2OYOA 1YS5A 3AA6B 3NSGA 4JFBA 3WI5A 1BXWA 2QTKA 3RBHA 4FOZA 3LK3A 1P8CA 2FGQX 3JTYA 2MHLA 2MNHA 4AYEC 2ZLDA 4GHBA 2PORA 4RL9A 2KC0A 3VZWX 2J4UP 3AAEB 1IZNB 2CWQA 4O4UA 4FMSA 3LVYA 3GP6A 2ODJA 1G90A 4LSIA 2N2LA 2J1NA 3AA7A 1GFMA 2LFUA 4FSOA 4G9QA 2Y0LA 3K19A 3LK2A 3PQUA 5DL8A 2KZ7B 3T20A 1LW1A 2F1VA 3D7IA 3C5OA 3UPGA 2Y0KA 2PFXA 2PRRA 1ZHWA 2K0LA 3POQA 5AFUK 3T24A 4F4BA 1GFNA 3EMNX 1QJPA 5GV0A 2M07A 3AA6A 1MM4A 1E54A 4GCSA 4O3YA 3A2SX 2YNKA 2GMYA 2OMFA 2QEUA 4FT6A 4G76A 4KR8A 2O4DA 4LSFA 5ADXK 2M06A 4FSPA 5DL7A 4FESA 4D65A 1Q9FA 1GFOA 3POUA 4PUXA 4KRAA 3FYXA 2XG6A 4AUIA 5IYUA 3VY8X 2O4VA 2Y7SA 2KDYA 3WI4A 2X27X 3DA4A 5FVNA 2JMMA 4AYNA 3AA0B 4AKRB 4GCPA 3VY9X 4BUMX 5AFUL 3HOEA 5D5DA 4FZLA 3VZUX 4FZMA 5DIKA 1ZHTA 2GE4A 3LK42 4GCQA 4C69X 1PHOA 4FRTA 4E1SA 4Z3TA 3POXA 5ADXL 2PRNA 4QQ1A 5DL5A 6PRNA 3C1LA 2Q0TA 3HW9A 3PRNA 4O3ZA 4AZLA 2W81C 2W80C 5DIPA 2Y2XA 3KVDD 3AAAB 5T5FA 5DL6A 4FUVA 2XE2A 1ME5A 1ZHXA 4RLBA 5G26A 4O3XB 3AA1B 3AA7B 4RLCA 1ORMA 3UU2A 3AAEA 1IZNA 1GFPA 3VE1A 4AYID 1GU9A 4B61A 1THQA 3LK2B 3PORA 3LK41 2ZFGA 4KR4A 3QRAA 3UAQA 4AKMA 2ES9A 3AA0A 4AKRA 1HXUA 2JN8A 3O0EA 4RJWA 4AYMC 1BH3A 3SYSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KZ7 A;  2KXP B;  3LK4 2;  2KXP A;  5AFU K;  5ADX L;  3AA6 B;  3LK3 B;  3AA6 A;  3LK3 A;  3AAA B;  5ADX K;  3AAA A;  3AAE B;  1IZN B;  3AA1 B;  3AA7 B;  3AAE A;  1IZN A;  3AA1 A;  3AA7 A;  3LK2 B;  3LK4 1;  3AA0 B;  4AKR B;  5AFU L;  3LK2 A;  3AA0 A;  4AKR A;  2KZ7 B; 
#chains in the Genus database with same CATH topology
 1ZHY A;  5JDP A;  1QJ9 A;  3HOL A;  4FZN A;  5PRN A;  2K4T A;  2FGR A;  4AYD C;  2OUW A;  7PRN A;  4G75 A;  4D5U A;  4JCH A;  1OPF A;  3SYB A;  2ERV A;  2XMX A;  1YS5 A;  5GTI O;  1BXW A;  2QTK A;  2MNH A;  2POR A;  2KC0 A;  3VZW X;  4O4U A;  3LVY A;  2R4L A;  2N2L A;  1GFM A;  4FSO A;  3K19 A;  3LK2 A;  5TIS O;  2F1C X;  1ZHW A;  3T24 A;  2IWV A;  1MM4 A;  1E54 A;  2WVP A;  4O3Y A;  2JQY A;  2GMY A;  4KR8 A;  2O4D A;  4FSP A;  5DL7 A;  3JCU O;  4AUI A;  3PGS A;  2O4V A;  2KDY A;  3DA4 A;  5FVN A;  4AKR B;  4PR7 A;  5AFU L;  1ZHT A;  3A0B O;  4C69 X;  5ADX L;  2PRN A;  4QQ1 A;  3C1L A;  3HW9 A;  2W80 C;  3AAA B;  2XE2 A;  1ME5 A;  1IZN A;  4AYI D;  1GU9 A;  3LK2 B;  2ZFG A;  3QRA A;  4AKM A;  3AA0 A;  3O0E A;  1HXU A;  2JN8 A;  1BH3 A;  2KZ7 A;  1MM5 A;  3TZG A;  1H6S 1;  3LK3 B;  3PGR A;  3G7G A;  1BT9 A;  3PQS A;  3AA1 A;  1HXX A;  2R4P A;  4D64 A;  3T0S A;  4C4V A;  8PRN A;  4E1T A;  2XE5 A;  5EE2 A;  2KXP A;  4U9C A;  3NSG A;  3RBH A;  1P8C A;  3JTY A;  2MHL A;  2J4U P;  1IZN B;  2J1N A;  2R4N A;  3A0H O;  1T1L A;  2KZ7 B;  3UPG A;  2PFX A;  3POQ A;  5AFU K;  1QJP A;  3AA6 A;  5G38 A;  4FT6 A;  5ADX K;  2M06 A;  1Q9F A;  1GFO A;  4KRA A;  2XG6 A;  3VY8 X;  2Y7S A;  3WI4 A;  2X27 X;  4C4V B;  4AYN A;  4GCP A;  3HOE A;  5D5D A;  3DZM A;  4FZL A;  3VZU X;  4GCQ A;  4FRT A;  2WJR A;  5DL5 A;  3PRN A;  3WU2 O;  4FUV A;  4RLB A;  5G26 A;  4O3X B;  4RLC A;  1ORM A;  3AAE A;  3LK4 1;  4K3C A;  4KR4 A;  3UAQ A;  2ES9 A;  4RJW A;  2CWQ A;  3SYS A;  5B66 O;  3SY9 A;  2YPV A;  3BRY A;  3QRC A;  4AFK A;  1OSM A;  4N59 A;  2AF7 A;  4LSH A;  4O3W A;  1T16 A;  5G39 A;  4GF4 A;  3SZD A;  2XE1 A;  4O49 A;  2XE3 A;  3BRZ A;  3PF1 A;  3VZT X;  4XNK A;  4C00 A;  3SZV A;  1ZHZ A;  1GFQ A;  4N75 A;  1Q9G A;  3V8U A;  3WI5 A;  4FOZ A;  2ZLD A;  4GHB A;  4RL9 A;  3AAE B;  3GP6 A;  2ODJ A;  1G90 A;  4LSI A;  4G9Q A;  5DL8 A;  1LW1 A;  2F1V A;  3C5O A;  2Y0K A;  2PRR A;  3EMN X;  2X9K A;  5GV0 A;  2YNK A;  2OMF A;  4G76 A;  4LSF A;  4FES A;  3POU A;  4PUX A;  3FYX A;  3DWO X;  4BUM X;  3AA0 B;  3VY9 X;  3KZI O;  3DWN A;  2GE4 A;  1PHO A;  3PGU A;  4K3B A;  6PRN A;  2IWW A;  2Q0T A;  4O3Z A;  4AZL A;  5DIP A;  2Y2X A;  3KVD D;  5DL6 A;  1ZHX A;  3AA1 B;  3UU2 A;  1GFP A;  2R4O A;  4AKR A;  2R8A A;  3NJT A;  2XTR A;  1KNC A;  1MPF A;  2KXP B;  4RJX A;  3BEY A;  2N2M A;  1VKE A;  4N58 A;  3DA3 A;  2LHF A;  5KAI O;  1HXT A;  4LSE A;  4PJ0 O;  2XTQ A;  3AAA A;  1PRN A;  5B5E O;  4XNL A;  3SY7 A;  5H2F O;  5G3A A;  4O4X A;  4FRX A;  3VE2 A;  1P4T A;  5E79 O;  2F1T A;  3HWB A;  1QJ8 A;  2Y0H A;  2IJC A;  2OYO A;  4JFB A;  3AA6 B;  3LK3 A;  2FGQ X;  4AYE C;  4UB8 O;  4FMS A;  4IL6 O;  1S5L O;  3AA7 A;  4CTD A;  2LFU A;  2Y0L A;  5GTH O;  3PQU A;  4UB6 O;  3T20 A;  3D7I A;  2K0L A;  4F4B A;  4FQE A;  1GFN A;  2M07 A;  4GCS A;  3A2S X;  2QEU A;  5KAF O;  2R89 A;  4D65 A;  3BS0 A;  5IYU A;  2JMM A;  4FZM A;  5DIK A;  3LK4 2;  4Z3T A;  4E1S A;  3POX A;  2W81 C;  2WJQ A;  2R88 A;  5T5F A;  2AXT O;  3AA7 B;  4B61 A;  1THQ A;  3POR A;  4N74 A;  4AYM C;  3VE1 A; 
#chains in the Genus database with same CATH homology
 2KZ7 A;  2XTR A;  3SY9 A;  1KNC A;  1MPF A;  1ZHY A;  1MM5 A;  2KXP B;  2YPV A;  4RJX A;  1QJ9 A;  3TZG A;  5JDP A;  3HOL A;  3QRC A;  3BEY A;  1H6S 1;  2N2M A;  1VKE A;  3LK3 B;  4N58 A;  4AFK A;  3DA3 A;  2LHF A;  1HXT A;  1OSM A;  4FZN A;  5PRN A;  4LSE A;  4N59 A;  3G7G A;  2K4T A;  2XTQ A;  3AAA A;  2AF7 A;  4LSH A;  1BT9 A;  1PRN A;  2FGR A;  4AYD C;  2OUW A;  7PRN A;  4XNL A;  4O3W A;  3PQS A;  3SY7 A;  3AA1 A;  1HXX A;  4G75 A;  4D5U A;  4GF4 A;  3SZD A;  4D64 A;  2XE1 A;  4O49 A;  4JCH A;  1OPF A;  3T0S A;  3SYB A;  2XE3 A;  4O4X A;  8PRN A;  3VZT X;  4FRX A;  4XNK A;  3VE2 A;  1P4T A;  2ERV A;  2F1T A;  4E1T A;  2XMX A;  3SZV A;  2XE5 A;  3HWB A;  1ZHZ A;  2KXP A;  1GFQ A;  1QJ8 A;  1Q9G A;  4U9C A;  2Y0H A;  5EE2 A;  3V8U A;  2IJC A;  2OYO A;  1YS5 A;  3AA6 B;  3NSG A;  4JFB A;  3WI5 A;  1BXW A;  2QTK A;  3RBH A;  4FOZ A;  3LK3 A;  1P8C A;  2FGQ X;  3JTY A;  2MHL A;  2MNH A;  4AYE C;  2ZLD A;  4GHB A;  2POR A;  4RL9 A;  2KC0 A;  3VZW X;  2J4U P;  3AAE B;  1IZN B;  2CWQ A;  4O4U A;  4FMS A;  3LVY A;  3GP6 A;  2ODJ A;  1G90 A;  4LSI A;  2N2L A;  2J1N A;  3AA7 A;  1GFM A;  2LFU A;  4FSO A;  4G9Q A;  2Y0L A;  3K19 A;  3LK2 A;  3PQU A;  5DL8 A;  2KZ7 B;  3T20 A;  1LW1 A;  2F1V A;  3D7I A;  3C5O A;  3UPG A;  2Y0K A;  2PFX A;  2PRR A;  1ZHW A;  2K0L A;  3POQ A;  5AFU K;  3T24 A;  4F4B A;  1GFN A;  3EMN X;  1QJP A;  5GV0 A;  2M07 A;  3AA6 A;  1MM4 A;  1E54 A;  4GCS A;  4O3Y A;  3A2S X;  2YNK A;  2GMY A;  2OMF A;  2QEU A;  4FT6 A;  4G76 A;  4KR8 A;  2O4D A;  4LSF A;  5ADX K;  2M06 A;  4FSP A;  5DL7 A;  4FES A;  4D65 A;  1Q9F A;  1GFO A;  3POU A;  4PUX A;  4KRA A;  3FYX A;  2XG6 A;  4AUI A;  5IYU A;  3VY8 X;  2O4V A;  2Y7S A;  2KDY A;  3WI4 A;  2X27 X;  3DA4 A;  5FVN A;  2JMM A;  4AYN A;  3AA0 B;  4AKR B;  4GCP A;  3VY9 X;  4BUM X;  5AFU L;  3HOE A;  5D5D A;  4FZL A;  3VZU X;  4FZM A;  5DIK A;  1ZHT A;  2GE4 A;  3LK4 2;  4GCQ A;  4C69 X;  1PHO A;  4FRT A;  4E1S A;  4Z3T A;  3POX A;  5ADX L;  2PRN A;  4QQ1 A;  5DL5 A;  6PRN A;  3C1L A;  2Q0T A;  3HW9 A;  3PRN A;  4O3Z A;  4AZL A;  2W81 C;  2W80 C;  5DIP A;  2Y2X A;  3KVD D;  3AAA B;  5T5F A;  5DL6 A;  4FUV A;  2XE2 A;  1ME5 A;  1ZHX A;  4RLB A;  5G26 A;  4O3X B;  3AA1 B;  3AA7 B;  4RLC A;  1ORM A;  3UU2 A;  3AAE A;  1IZN A;  1GFP A;  3VE1 A;  4AYI D;  1GU9 A;  4B61 A;  1THQ A;  3LK2 B;  3POR A;  3LK4 1;  2ZFG A;  4KR4 A;  3QRA A;  3UAQ A;  4AKM A;  2ES9 A;  3AA0 A;  4AKR A;  1HXU A;  2JN8 A;  3O0E A;  4RJW A;  4AYM C;  1BH3 A;  3SYS A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...