3AA1A

Crystal structure of actin capping protein in complex with the cp-binding motif derived from ckip-1
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
271
structure length
271
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords F-actin-capping protein subunit alpha-1
publication title Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
pubmed doi rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 83
structure length 271
sequence length 271
ec nomenclature
pdb deposition date 2009-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aa1A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aa1A02
1IZNA 3LK41 2KZ7B 3LK2B 2KZ7A 3LK2A 3LK3B 3AA1B 3AA7B 3LK3A 3AA0B 3LK42 3AA1A 3AA7A 3AA0A 2KXPB 3AA6B 2KXPA 3AA6A 5ADXL 4AKRB 4AKRA 5AFUL 3AAAB 3AAAA 3AAEB 3AAEA 5ADXK 1IZNB 5AFUK
chains in the Genus database with same CATH superfamily
2XMXA 4UB6O 2AXTO 3HOEA 1H6S1 4GHBA 4N75A 2Y0KA 2R4LA 4AKRB 3VZTX 3DWNA 3PRNA 4AFKA 1YS5A 3VY8X 2R89A 4AYMC 1GFMA 1G90A 3K19A 2JQYA 3O0EA 1ME5A 5FVNA 3LK3A 4D5UA 3AA1A 2W80C 4G9QA 4B61A 5H2FO 2ZFGA 6PRNA 3VE1A 4LSEA 5EE2A 2F1TA 2N2MA 4FQEA 4LSHA 5PRNA 3BS0A 3HW9A 2N2LA 3VZUX 2J4UP 2KZ7B 3WI4A 4F4BA 3C1LA 4FRXA 1QJ8A 4O4XA 3PORA 5DIPA 3VE2A 4AKRA 4GF4A 3POQA 3UPGA 4XNKA 2IJCA 4C69X 4CTDA 1Q9GA 2QTKA 1P4TA 2R4NA 3AA6B 1GU9A 5G26A 5ADXL 4C4VB 4D65A 2F1CX 1GFOA 2JN8A 3AAAB 4O3YA 2X27X 4BUMX 2KZ7A 2IWVA 4GCPA 5KAFO 1HXTA 3JCUO 4G75A 4AYNA 1MM4A 4JCHA 5GTIO 1QJ9A 1E54A 2YPVA 3EMNX 1PRNA 3AA7A 3PQSA 4AYID 3NJTA 2KXPA 2ERVA 3G7GA 2X9KA 3AAAA 4FZMA 3JTYA 4LSIA 2MHLA 2OYOA 4QQ1A 1P8CA 5GTHO 4K3BA 1IZNA 4G76A 3RBHA 1THQA 3LK42 3AA0A 4RL9A 2CWQA 3VZWX 3SZDA 3DA4A 4RJWA 3AAEB 2Y7SA 2K0LA 4PR7A 5G3AA 4PUXA 4E1SA 5G39A 2PFXA 5TISO 4FOZA 5AFUK 2XTQA 5D5DA 1T1LA 1BXWA 3LK2B 1HXXA 4AYEC 1ZHXA 2ES9A 4N74A 4LSFA 2M07A 3BRZA 3HWBA 3PGSA 2KC0A 5DL7A 3BEYA 1T16A 3QRCA 2XE2A 3KZIO 2K4TA 4KR8A 2XE1A 3A0BO 5DIKA 3WU2O 3A0HO 4FSPA 2XTRA 5T5FA 2LHFA 4O3XB 3WI5A 2XG6A 2R4OA 1BT9A 2R88A 4FRTA 1ZHYA 2Q0TA 2MNHA 3NSGA 2GE4A 4FESA 5E79O 5KAIO 2WJQA 4FT6A 4D64A 3KVDD 4AUIA 2Y0HA 2ZLDA 3D7IA 3V8UA 3DZMA 5AFUL 4RJXA 4XNLA 1ZHZA 3T20A 4C00A 4O49A 3SYSA 5GV0A 7PRNA 2F1VA 1GFQA 3AA1B 2OMFA 3AA6A 4N59A 4C4VA 5JDPA 1KNCA 3UU2A 2WJRA 2Y2XA 4O4UA 4U9CA 1MPFA 4O3ZA 4KR4A 5B5EO 2AF7A 2OUWA 1LW1A 8PRNA 4FSOA 3SZVA 2LFUA 2R4PA 4O3WA 2YNKA 4Z3TA 2O4DA 3BRYA 5ADXK 1MM5A 3DWOX 1ORMA 4K3CA 1PHOA 1ZHTA 4FZNA 4E1TA 4KRAA 3C5OA 5G38A 1GFPA 3SY9A 4PJ0O 4RLCA 3UAQA 2FGRA 4AYDC 1GFNA 3TZGA 2GMYA 2PORA 5IYUA 4N58A 1HXUA 2WVPA 3POUA 2QEUA 5DL5A 3LVYA 4RLBA 2M06A 3SYBA 1VKEA 2Y0LA 3AAEA 2IWWA 4UB8O 1OPFA 4FUVA 2O4VA 4GCQA 4AKMA 2ODJA 2J1NA 4AZLA 2PRNA 4GCSA 3GP6A 3LK2A 3AA7B 5B66O 3A2SX 3QRAA 2KXPB 3PQUA 4IL6O 4JFBA 3T24A 2FGQX 5DL6A 3DA3A 3POXA 3PGUA 2JMMA 2XE5A 1IZNB 1QJPA 4FZLA 3PGRA 3LK41 2PRRA 3LK3B 3AA0B 4FMSA 2XE3A 2R8AA 1Q9FA 1BH3A 3HOLA 3T0SA 2KDYA 3FYXA 1ZHWA 3SY7A 5DL8A 1OSMA 2W81C 3VY9X 1S5LO 3PF1A
chains in the Genus database with same CATH topology
1ZHTA 4FZNA 2XMXA 4BUMX 2KZ7A 4FSPA 4E1TA 4KRAA 3HOEA 2XTRA 5T5FA 4GCPA 1H6S1 4GHBA 2LHFA 3C5OA 4O3XB 1GFPA 1HXTA 3WI5A 2XG6A 2Y0KA 1BT9A 3SY9A 4AKRB 4RLCA 3VZTX 4G75A 4AYNA 1MM4A 4FRTA 3UAQA 1ZHYA 3PRNA 4JCHA 2FGRA 4AYDC 1GFNA 4AFKA 1YS5A 2Q0TA 1QJ9A 3TZGA 1E54A 3VY8X 2GMYA 2MNHA 2PORA 3NSGA 5IYUA 4AYMC 1GFMA 2GE4A 4FESA 3K19A 4N58A 1HXUA 1G90A 3O0EA 1ME5A 3POUA 2QEUA 4FT6A 5DL5A 4D64A 2YPVA 3LVYA 3KVDD 4AUIA 5FVNA 2Y0HA 2ZLDA 3LK3A 4D5UA 3EMNX 3D7IA 1PRNA 3AA1A 3AA7A 2W80C 3PQSA 4AYID 4RLBA 2M06A 4G9QA 2KXPA 2ERVA 3V8UA 4B61A 3G7GA 5AFUL 2ZFGA 4RJXA 6PRNA 3AAAA 3VE1A 3SYBA 4FZMA 3JTYA 1VKEA 4LSIA 4LSEA 4XNLA 1ZHZA 5EE2A 3T20A 2Y0LA 4O49A 3AAEA 2MHLA 1OPFA 2OYOA 2F1TA 4QQ1A 2N2MA 3SYSA 4FUVA 2O4VA 1P8CA 4GCQA 4LSHA 5PRNA 5GV0A 4AKMA 2ODJA 3HW9A 2N2LA 2J1NA 1IZNA 4AZLA 4G76A 3VZUX 2J4UP 7PRNA 2F1VA 2KZ7B 2PRNA 3GP6A 4GCSA 3RBHA 3WI4A 4F4BA 1GFQA 3LK2A 1THQA 3C1LA 3AA1B 3AA7B 3LK42 2OMFA 3A2SX 4FRXA 1QJ8A 3QRAA 3AA0A 4O4XA 2KXPB 3PORA 3PQUA 4RL9A 3AA6A 5DIPA 3VE2A 4N59A 2CWQA 3VZWX 3SZDA 4JFBA 4AKRA 3T24A 3DA4A 4GF4A 2FGQX 4RJWA 5DL6A 5JDPA 3POQA 3UPGA 1KNCA 3UU2A 3AAEB 4XNKA 3DA3A 2Y7SA 3POXA 2IJCA 2Y2XA 4C69X 4O4UA 2K0LA 4PUXA 4U9CA 2JMMA 1Q9GA 2QTKA 1MPFA 2XE5A 2PFXA 1IZNB 1QJPA 4E1SA 4FZLA 4O3ZA 1P4TA 4FOZA 5AFUK 4KR4A 3LK41 2XTQA 5D5DA 1BXWA 2PRRA 2AF7A 1HXXA 2OUWA 1ZHXA 3LK2B 2ES9A 4AYEC 1LW1A 4LSFA 2M07A 3LK3B 8PRNA 3AA0B 4FMSA 2XE3A 3HWBA 3AA6B 1GU9A 4FSOA 2KC0A 5DL7A 3BEYA 3QRCA 1Q9FA 2XE2A 1BH3A 3HOLA 5G26A 3SZVA 3T0SA 4D65A 5ADXL 2LFUA 1GFOA 2JN8A 3AAAB 2KDYA 2K4TA 3FYXA 1ZHWA 4KR8A 3SY7A 2XE1A 4O3WA 5DL8A 2YNKA 4Z3TA 2O4DA 1OSMA 5ADXK 5DIKA 1MM5A 4O3YA 2W81C 1ORMA 2X27X 3VY9X 1PHOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IZN A;  3LK4 1;  2KZ7 B;  3LK2 B;  2KZ7 A;  3LK2 A;  3LK3 B;  3AA1 B;  3AA7 B;  3LK3 A;  3AA0 B;  3LK4 2;  3AA1 A;  3AA7 A;  3AA0 A;  2KXP B;  3AA6 B;  2KXP A;  3AA6 A;  5ADX L;  4AKR B;  4AKR A;  5AFU L;  3AAA B;  3AAA A;  3AAE B;  3AAE A;  5ADX K;  1IZN B;  5AFU K; 
#chains in the Genus database with same CATH topology
 2XMX A;  4UB6 O;  2AXT O;  3HOE A;  1H6S 1;  4GHB A;  4N75 A;  2Y0K A;  2R4L A;  4AKR B;  3VZT X;  3DWN A;  3PRN A;  4AFK A;  1YS5 A;  3VY8 X;  2R89 A;  4AYM C;  1GFM A;  1G90 A;  3K19 A;  2JQY A;  3O0E A;  1ME5 A;  5FVN A;  3LK3 A;  4D5U A;  3AA1 A;  2W80 C;  4G9Q A;  4B61 A;  5H2F O;  2ZFG A;  6PRN A;  3VE1 A;  4LSE A;  5EE2 A;  2F1T A;  2N2M A;  4FQE A;  4LSH A;  5PRN A;  3BS0 A;  3HW9 A;  2N2L A;  3VZU X;  2J4U P;  2KZ7 B;  3WI4 A;  4F4B A;  3C1L A;  4FRX A;  1QJ8 A;  4O4X A;  3POR A;  5DIP A;  3VE2 A;  4AKR A;  4GF4 A;  3POQ A;  3UPG A;  4XNK A;  2IJC A;  4C69 X;  4CTD A;  1Q9G A;  2QTK A;  1P4T A;  2R4N A;  3AA6 B;  1GU9 A;  5G26 A;  5ADX L;  4C4V B;  4D65 A;  2F1C X;  1GFO A;  2JN8 A;  3AAA B;  4O3Y A;  2X27 X;  4BUM X;  2KZ7 A;  2IWV A;  4GCP A;  5KAF O;  1HXT A;  3JCU O;  4G75 A;  4AYN A;  1MM4 A;  4JCH A;  5GTI O;  1QJ9 A;  1E54 A;  2YPV A;  3EMN X;  1PRN A;  3AA7 A;  3PQS A;  4AYI D;  3NJT A;  2KXP A;  2ERV A;  3G7G A;  2X9K A;  3AAA A;  4FZM A;  3JTY A;  4LSI A;  2MHL A;  2OYO A;  4QQ1 A;  1P8C A;  5GTH O;  4K3B A;  1IZN A;  4G76 A;  3RBH A;  1THQ A;  3LK4 2;  3AA0 A;  4RL9 A;  2CWQ A;  3VZW X;  3SZD A;  3DA4 A;  4RJW A;  3AAE B;  2Y7S A;  2K0L A;  4PR7 A;  5G3A A;  4PUX A;  4E1S A;  5G39 A;  2PFX A;  5TIS O;  4FOZ A;  5AFU K;  2XTQ A;  5D5D A;  1T1L A;  1BXW A;  3LK2 B;  1HXX A;  4AYE C;  1ZHX A;  2ES9 A;  4N74 A;  4LSF A;  2M07 A;  3BRZ A;  3HWB A;  3PGS A;  2KC0 A;  5DL7 A;  3BEY A;  1T16 A;  3QRC A;  2XE2 A;  3KZI O;  2K4T A;  4KR8 A;  2XE1 A;  3A0B O;  5DIK A;  3WU2 O;  3A0H O;  4FSP A;  2XTR A;  5T5F A;  2LHF A;  4O3X B;  3WI5 A;  2XG6 A;  2R4O A;  1BT9 A;  2R88 A;  4FRT A;  1ZHY A;  2Q0T A;  2MNH A;  3NSG A;  2GE4 A;  4FES A;  5E79 O;  5KAI O;  2WJQ A;  4FT6 A;  4D64 A;  3KVD D;  4AUI A;  2Y0H A;  2ZLD A;  3D7I A;  3V8U A;  3DZM A;  5AFU L;  4RJX A;  4XNL A;  1ZHZ A;  3T20 A;  4C00 A;  4O49 A;  3SYS A;  5GV0 A;  7PRN A;  2F1V A;  1GFQ A;  3AA1 B;  2OMF A;  3AA6 A;  4N59 A;  4C4V A;  5JDP A;  1KNC A;  3UU2 A;  2WJR A;  2Y2X A;  4O4U A;  4U9C A;  1MPF A;  4O3Z A;  4KR4 A;  5B5E O;  2AF7 A;  2OUW A;  1LW1 A;  8PRN A;  4FSO A;  3SZV A;  2LFU A;  2R4P A;  4O3W A;  2YNK A;  4Z3T A;  2O4D A;  3BRY A;  5ADX K;  1MM5 A;  3DWO X;  1ORM A;  4K3C A;  1PHO A;  1ZHT A;  4FZN A;  4E1T A;  4KRA A;  3C5O A;  5G38 A;  1GFP A;  3SY9 A;  4PJ0 O;  4RLC A;  3UAQ A;  2FGR A;  4AYD C;  1GFN A;  3TZG A;  2GMY A;  2POR A;  5IYU A;  4N58 A;  1HXU A;  2WVP A;  3POU A;  2QEU A;  5DL5 A;  3LVY A;  4RLB A;  2M06 A;  3SYB A;  1VKE A;  2Y0L A;  3AAE A;  2IWW A;  4UB8 O;  1OPF A;  4FUV A;  2O4V A;  4GCQ A;  4AKM A;  2ODJ A;  2J1N A;  4AZL A;  2PRN A;  4GCS A;  3GP6 A;  3LK2 A;  3AA7 B;  5B66 O;  3A2S X;  3QRA A;  2KXP B;  3PQU A;  4IL6 O;  4JFB A;  3T24 A;  2FGQ X;  5DL6 A;  3DA3 A;  3POX A;  3PGU A;  2JMM A;  2XE5 A;  1IZN B;  1QJP A;  4FZL A;  3PGR A;  3LK4 1;  2PRR A;  3LK3 B;  3AA0 B;  4FMS A;  2XE3 A;  2R8A A;  1Q9F A;  1BH3 A;  3HOL A;  3T0S A;  2KDY A;  3FYX A;  1ZHW A;  3SY7 A;  5DL8 A;  1OSM A;  2W81 C;  3VY9 X;  1S5L O;  3PF1 A; 
#chains in the Genus database with same CATH homology
 1ZHT A;  4FZN A;  2XMX A;  4BUM X;  2KZ7 A;  4FSP A;  4E1T A;  4KRA A;  3HOE A;  2XTR A;  5T5F A;  4GCP A;  1H6S 1;  4GHB A;  2LHF A;  3C5O A;  4O3X B;  1GFP A;  1HXT A;  3WI5 A;  2XG6 A;  2Y0K A;  1BT9 A;  3SY9 A;  4AKR B;  4RLC A;  3VZT X;  4G75 A;  4AYN A;  1MM4 A;  4FRT A;  3UAQ A;  1ZHY A;  3PRN A;  4JCH A;  2FGR A;  4AYD C;  1GFN A;  4AFK A;  1YS5 A;  2Q0T A;  1QJ9 A;  3TZG A;  1E54 A;  3VY8 X;  2GMY A;  2MNH A;  2POR A;  3NSG A;  5IYU A;  4AYM C;  1GFM A;  2GE4 A;  4FES A;  3K19 A;  4N58 A;  1HXU A;  1G90 A;  3O0E A;  1ME5 A;  3POU A;  2QEU A;  4FT6 A;  5DL5 A;  4D64 A;  2YPV A;  3LVY A;  3KVD D;  4AUI A;  5FVN A;  2Y0H A;  2ZLD A;  3LK3 A;  4D5U A;  3EMN X;  3D7I A;  1PRN A;  3AA1 A;  3AA7 A;  2W80 C;  3PQS A;  4AYI D;  4RLB A;  2M06 A;  4G9Q A;  2KXP A;  2ERV A;  3V8U A;  4B61 A;  3G7G A;  5AFU L;  2ZFG A;  4RJX A;  6PRN A;  3AAA A;  3VE1 A;  3SYB A;  4FZM A;  3JTY A;  1VKE A;  4LSI A;  4LSE A;  4XNL A;  1ZHZ A;  5EE2 A;  3T20 A;  2Y0L A;  4O49 A;  3AAE A;  2MHL A;  1OPF A;  2OYO A;  2F1T A;  4QQ1 A;  2N2M A;  3SYS A;  4FUV A;  2O4V A;  1P8C A;  4GCQ A;  4LSH A;  5PRN A;  5GV0 A;  4AKM A;  2ODJ A;  3HW9 A;  2N2L A;  2J1N A;  1IZN A;  4AZL A;  4G76 A;  3VZU X;  2J4U P;  7PRN A;  2F1V A;  2KZ7 B;  2PRN A;  3GP6 A;  4GCS A;  3RBH A;  3WI4 A;  4F4B A;  1GFQ A;  3LK2 A;  1THQ A;  3C1L A;  3AA1 B;  3AA7 B;  3LK4 2;  2OMF A;  3A2S X;  4FRX A;  1QJ8 A;  3QRA A;  3AA0 A;  4O4X A;  2KXP B;  3POR A;  3PQU A;  4RL9 A;  3AA6 A;  5DIP A;  3VE2 A;  4N59 A;  2CWQ A;  3VZW X;  3SZD A;  4JFB A;  4AKR A;  3T24 A;  3DA4 A;  4GF4 A;  2FGQ X;  4RJW A;  5DL6 A;  5JDP A;  3POQ A;  3UPG A;  1KNC A;  3UU2 A;  3AAE B;  4XNK A;  3DA3 A;  2Y7S A;  3POX A;  2IJC A;  2Y2X A;  4C69 X;  4O4U A;  2K0L A;  4PUX A;  4U9C A;  2JMM A;  1Q9G A;  2QTK A;  1MPF A;  2XE5 A;  2PFX A;  1IZN B;  1QJP A;  4E1S A;  4FZL A;  4O3Z A;  1P4T A;  4FOZ A;  5AFU K;  4KR4 A;  3LK4 1;  2XTQ A;  5D5D A;  1BXW A;  2PRR A;  2AF7 A;  1HXX A;  2OUW A;  1ZHX A;  3LK2 B;  2ES9 A;  4AYE C;  1LW1 A;  4LSF A;  2M07 A;  3LK3 B;  8PRN A;  3AA0 B;  4FMS A;  2XE3 A;  3HWB A;  3AA6 B;  1GU9 A;  4FSO A;  2KC0 A;  5DL7 A;  3BEY A;  3QRC A;  1Q9F A;  2XE2 A;  1BH3 A;  3HOL A;  5G26 A;  3SZV A;  3T0S A;  4D65 A;  5ADX L;  2LFU A;  1GFO A;  2JN8 A;  3AAA B;  2KDY A;  2K4T A;  3FYX A;  1ZHW A;  4KR8 A;  3SY7 A;  2XE1 A;  4O3W A;  5DL8 A;  2YNK A;  4Z3T A;  2O4D A;  1OSM A;  5ADX K;  5DIK A;  1MM5 A;  4O3Y A;  2W81 C;  1ORM A;  2X27 X;  3VY9 X;  1PHO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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