1KNCA

Structure of ahpd from mycobacterium tuberculosis, a novel enzyme with thioredoxin-like activity.
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
174
structure length
174
Chain Sequence
SIEKLKAALPEYAKDIKLNLSSITRSSVLDQEQLWGTLLASAAATRNPQVLADIGAEATDHLSAAARHAALGAAAIMGMNNVFYRGRGFLEGRYDDLRPGLRMNIIANPGIPKANFELWSFAVSAINGCSHCLVAHEHTLRTVGVDREAIFEALKAAAIVSGVAQALATIEALS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords AhpD protein
publication title Metabolic enzymes of mycobacteria linked to antioxidant defense by a thioredoxin-like protein.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Electron transport
total genus 72
structure length 174
sequence length 174
chains with identical sequence B, C
ec nomenclature ec 1.11.1.15: Peroxiredoxin.
pdb deposition date 2001-12-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 1kncA00
2OUWA 1P8CA 2OYOA 2PRRA 2GMYA 2QEUA 3D7IA 2Q0TA 4G9QA 1VKEA 3BEYA 2IJCA 1ME5A 1GU9A 2AF7A 2O4DA 1LW1A 3LVYA 5DIPA 5DIKA 2PFXA 1KNCA 3C1LA 2CWQA
chains in the Genus database with same CATH superfamily
3AAAA 2OUWA 1P8CA 2OYOA 2PRRA 2GMYA 3AA0A 1IZNA 2QEUA 3D7IA 2Q0TA 4G9QA 3LK2A 1VKEA 2KZ7A 3BEYA 3LK3A 2KXPA 4AKRA 2IJCA 3AA1A 1ME5A 1GU9A 5ADXK 2AF7A 3AA6A 2O4DA 1LW1A 3AA7A 5AFUK 3LVYA 3AAEA 5DIPA 2ES9A 5DIKA 2PFXA 1KNCA 3C1LA 3LK41 2CWQA 2JN8A
chains in the Genus database with same CATH topology
3AAAA 2OUWA 1P8CA 2OYOA 2PRRA 2GMYA 3AA0A 1IZNA 2QEUA 3D7IA 2Q0TA 4G9QA 3LK2A 1VKEA 2KZ7A 3BEYA 3LK3A 2KXPA 4AKRA 2IJCA 3AA1A 1ME5A 1GU9A 5ADXK 2AF7A 3AA6A 2O4DA 1LW1A 3AA7A 5AFUK 3LVYA 3AAEA 5DIPA 2ES9A 5DIKA 2PFXA 1KNCA 3C1LA 3LK41 2CWQA 2JN8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OUW A;  1P8C A;  2OYO A;  2PRR A;  2GMY A;  2QEU A;  3D7I A;  2Q0T A;  4G9Q A;  1VKE A;  3BEY A;  2IJC A;  1ME5 A;  1GU9 A;  2AF7 A;  2O4D A;  1LW1 A;  3LVY A;  5DIP A;  5DIK A;  2PFX A;  1KNC A;  3C1L A;  2CWQ A; 
#chains in the Genus database with same CATH topology
 3AAA A;  2OUW A;  1P8C A;  2OYO A;  2PRR A;  2GMY A;  3AA0 A;  1IZN A;  2QEU A;  3D7I A;  2Q0T A;  4G9Q A;  3LK2 A;  1VKE A;  2KZ7 A;  3BEY A;  3LK3 A;  2KXP A;  4AKR A;  2IJC A;  3AA1 A;  1ME5 A;  1GU9 A;  5ADX K;  2AF7 A;  3AA6 A;  2O4D A;  1LW1 A;  3AA7 A;  5AFU K;  3LVY A;  3AAE A;  5DIP A;  2ES9 A;  5DIK A;  2PFX A;  1KNC A;  3C1L A;  3LK4 1;  2CWQ A;  2JN8 A; 
#chains in the Genus database with same CATH homology
 3AAA A;  2OUW A;  1P8C A;  2OYO A;  2PRR A;  2GMY A;  3AA0 A;  1IZN A;  2QEU A;  3D7I A;  2Q0T A;  4G9Q A;  3LK2 A;  1VKE A;  2KZ7 A;  3BEY A;  3LK3 A;  2KXP A;  4AKR A;  2IJC A;  3AA1 A;  1ME5 A;  1GU9 A;  5ADX K;  2AF7 A;  3AA6 A;  2O4D A;  1LW1 A;  3AA7 A;  5AFU K;  3LVY A;  3AAE A;  5DIP A;  2ES9 A;  5DIK A;  2PFX A;  1KNC A;  3C1L A;  3LK4 1;  2CWQ A;  2JN8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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