2KZ7A

Solution structure of the carmil cah3a/b domain bound to capping protein (cp)
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
275
structure length
275
Chain Sequence
b'RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords F-actin-capping protein subunit alpha-1
publication title Solution structure of the CARMIL CAH3a/b domain bound to capping protein (CP)
rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 75
structure length 275
sequence length 275
ec nomenclature
pdb deposition date 2010-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2kz7A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 2kz7A02
3AAEA 5ADXK 3AA7B 3LK42 3LK2B 2KXPA 3AA1A 4AKRB 3AAAB 1IZNB 3LK41 5AFUK 3AA0B 3AA7A 3AA6B 3LK2A 3LK3B 5ADXL 4AKRA 5AFUL 2KZ7B 3AAAA 1IZNA 3AA0A 3AAEB 3AA6A 2KXPB 3LK3A 3AA1B 2KZ7A
chains in the Genus database with same CATH superfamily
5DL8A 4FUVA 4QQ1A 4AYDC 1BT9A 3AAAB 2KDYA 3A2SX 3JTYA 2MNHA 4N59A 3VE1A 3VZTX 2KZ7B 2X27X 3V8UA 2ERVA 3SY7A 1T16A 2W81C 3POUA 4FQEA 5T5FA 3DWOX 4PR7A 5KAIO 2ZFGA 5E79O 5B5EO 5ADXL 3SYSA 3PGUA 3UU2A 1ZHWA 3AAAA 1GFMA 3DZMA 2WJRA 2LFUA 2M06A 3HW9A 8PRNA 2GE4A 2KZ7A 2ODJA 4RJXA 1GFPA 3PGRA 4KR8A 3G7GA 3BS0A 1P4TA 4XNLA 3LK2A 3LK3B 3T24A 3A0BO 5EE2A 5JDPA 1G90A 2WJQA 4IL6O 2WVPA 2R4LA 5DL6A 3T0SA 3KVDD 4RL9A 3UAQA 1HXTA 2R4PA 3WI5A 2QEUA 4FSPA 5IYUA 2M07A 4XNKA 3BEYA 3LK3A 3AA1B 4E1TA 2R4OA 4GCSA 2JN8A 4FRTA 1YS5A 5G26A 1ZHXA 4LSFA 2IWWA 3BRZA 4RLCA 2FGQX 1IZNB 1Q9FA 3DA3A 3FYXA 3VZUX 4AYID 2LHFA 4FZMA 3C1LA 4G9QA 4G75A 1QJ9A 3AA6A 3JCUO 2CWQA 4FRXA 4AYMC 4D64A 2PRRA 2F1VA 3O0EA 4JFBA 1Q9GA 4LSEA 3AA1A 4FSOA 3POQA 4C69X 2R89A 3WI4A 2XTQA 4AKRA 4C00A 4GCQA 1IZNA 2XE5A 5FVNA 4AUIA 4BUMX 2FGRA 2Y0HA 4GCPA 4N74A 3AAEA 3LK2B 5DIPA 1H6S1 1KNCA 4O4UA 4O3XB 4FOZA 1BH3A 4O3WA 1HXXA 1ZHTA 4FZLA 3TZGA 5AFUL 4AFKA 3VE2A 4K3BA 4LSIA 2XE3A 2F1CX 1OPFA 1VKEA 1PRNA 1S5LO 3QRCA 1BXWA 5AFUK 3PF1A 4U9CA 4E1SA 3AA7A 3HOEA 4D65A 3HOLA 1ORMA 2XE1A 4O3ZA 4KRAA 3PGSA 1LW1A 3SZDA 5PRNA 7PRNA 3PQSA 6PRNA 3T20A 3LK41 1PHOA 3AA6B 4RLBA 3PRNA 2X9KA 5DL7A 2JMMA 1MM5A 4AKMA 1OSMA 2ES9A 4JCHA 3VZWX 5DIKA 2OYOA 4AYEC 3SY9A 2QTKA 1ME5A 2JQYA 2Y0LA 2N2MA 4AKRB 3PQUA 2J4UP 2O4DA 2N2LA 2YNKA 4FT6A 2ZLDA 3NJTA 4GF4A 3VY8X 3AAEB 1GU9A 5GTHO 1QJ8A 3QRAA 2XMXA 5KAFO 2XTRA 2YPVA 5H2FO 3GP6A 4K3CA 4O3YA 3AA0B 4PJ0O 4D5UA 2GMYA 4KR4A 4B61A 2IWVA 2W80C 2J1NA 4LSHA 5G38A 3HWBA 4FESA 3LVYA 4C4VA 2R88A 2XG6A 5TISO 4CTDA 3AA7B 1THQA 2Y0KA 2K0LA 1GFNA 3C5OA 1GFQA 2AF7A 2MHLA 4FZNA 3AA0A 1E54A 1ZHYA 4O4XA 4FMSA 3K19A 4GHBA 2Y2XA 2KXPA 4UB8O 5GTIO 1T1LA 2KC0A 4AYNA 2OUWA 1QJPA 3WU2O 4N75A 2XE2A 3BRYA 3EMNX 3UPGA 5ADXK 2PFXA 3SYBA 4N58A 2Y7SA 3PORA 3VY9X 3D7IA 2R8AA 1MPFA 3KZIO 2IJCA 5B66O 4UB6O 4F4BA 4Z3TA 2F1TA 5GV0A 2Q0TA 2PORA 3DWNA 5G39A 2PRNA 3NSGA 4C4VB 4G76A 3POXA 2AXTO 2OMFA 4RJWA 3SZVA 3RBHA 3LK42 2O4VA 1P8CA 1MM4A 1ZHZA 5G3AA 4O49A 4PUXA 5D5DA 1HXUA 2R4NA 3DA4A 5DL5A 3A0HO 2K4TA 4AZLA 2KXPB 1GFOA
chains in the Genus database with same CATH topology
5DL8A 4FUVA 5G26A 1ZHXA 4QQ1A 1LW1A 2Y2XA 4GHBA 3SZDA 2KXPA 4AYDC 1BT9A 4LSFA 5PRNA 7PRNA 3PQSA 6PRNA 3AAAB 2FGQX 1IZNB 3LK41 1PHOA 1Q9FA 3DA3A 2KDYA 3A2SX 3FYXA 3JTYA 3VZUX 2MNHA 4N59A 3VE1A 3VZTX 3AA6B 4RLBA 4AYID 2LHFA 3PRNA 4FZMA 5DL7A 3C1LA 1MM5A 2JMMA 2KZ7B 4AKMA 4G9QA 2KC0A 2X27X 1OSMA 2ES9A 4AYNA 4JCHA 2OUWA 4G75A 5DIKA 3V8UA 1QJ9A 1QJPA 3VZWX 2OYOA 3AA6A 4AYEC 2ERVA 3SY7A 3SY9A 2CWQA 2QTKA 1ME5A 2XE2A 3EMNX 2W81C 4FRXA 4AYMC 4D64A 2PRRA 5ADXK 3POUA 2F1VA 3O0EA 2PFXA 2Y0LA 2N2MA 4JFBA 4N58A 5T5FA 3SYBA 1Q9GA 2Y7SA 4LSEA 3AA1A 4AKRB 3PORA 3PQUA 4FSOA 3POQA 2J4UP 3VY9X 2O4DA 2N2LA 2YNKA 2ZFGA 4C69X 3D7IA 4FT6A 2ZLDA 5ADXL 1MPFA 3WI4A 3SYSA 2XTQA 4AKRA 3UU2A 1ZHWA 3AAAA 1GFMA 1IZNA 2XE5A 4GCQA 4GF4A 3AAEB 5FVNA 3VY8X 4AUIA 1GU9A 2IJCA 1QJ8A 4BUMX 2LFUA 2FGRA 2Y0HA 3QRAA 2XMXA 4F4BA 2M06A 3HW9A 4GCPA 4Z3TA 8PRNA 2GE4A 3T20A 2F1TA 2KZ7A 3AAEA 2ODJA 4RJXA 2XTRA 2YPVA 5GV0A 1GFPA 3LK2B 2Q0TA 3GP6A 2PORA 4KR8A 5DIPA 1H6S1 1KNCA 4O3YA 4O4UA 3AA0B 3G7GA 4O3XB 1P4TA 4FOZA 2PRNA 4D5UA 3NSGA 4XNLA 1BH3A 3LK2A 2GMYA 3LK3B 4KR4A 3T24A 4O3WA 1HXXA 1ZHTA 4FZLA 3TZGA 4G76A 5EE2A 5AFUL 5JDPA 4AFKA 3POXA 4B61A 2W80C 2J1NA 4LSHA 3VE2A 3HWBA 4FESA 3LVYA 2OMFA 4LSIA 4RJWA 2XE3A 1G90A 2XG6A 1OPFA 3SZVA 1VKEA 1PRNA 5DL6A 3AA7B 1THQA 2Y0KA 3LK42 2O4VA 3RBHA 3T0SA 3UPGA 3KVDD 4RL9A 2K0LA 3QRCA 1P8CA 1GFNA 3UAQA 1MM4A 1BXWA 1ZHZA 5AFUK 4RLCA 4U9CA 3C5OA 4O49A 4E1SA 1HXTA 4PUXA 1HXUA 5D5DA 3AA7A 3WI5A 3DA4A 3HOEA 1GFQA 4D65A 2QEUA 4FSPA 5DL5A 5IYUA 2AF7A 2MHLA 4FZNA 3AA0A 2M07A 3HOLA 4XNKA 1E54A 2K4TA 1ZHYA 4AZLA 1ORMA 3BEYA 3LK3A 2KXPB 2XE1A 3AA1B 4O3ZA 4E1TA 4GCSA 2JN8A 1GFOA 4FMSA 4FRTA 4KRAA 3K19A 4O4XA 1YS5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AAE A;  5ADX K;  3AA7 B;  3LK4 2;  3LK2 B;  2KXP A;  3AA1 A;  4AKR B;  3AAA B;  1IZN B;  3LK4 1;  5AFU K;  3AA0 B;  3AA7 A;  3AA6 B;  3LK2 A;  3LK3 B;  5ADX L;  4AKR A;  5AFU L;  2KZ7 B;  3AAA A;  1IZN A;  3AA0 A;  3AAE B;  3AA6 A;  2KXP B;  3LK3 A;  3AA1 B;  2KZ7 A; 
#chains in the Genus database with same CATH topology
 5DL8 A;  4FUV A;  4QQ1 A;  4AYD C;  1BT9 A;  3AAA B;  2KDY A;  3A2S X;  3JTY A;  2MNH A;  4N59 A;  3VE1 A;  3VZT X;  2KZ7 B;  2X27 X;  3V8U A;  2ERV A;  3SY7 A;  1T16 A;  2W81 C;  3POU A;  4FQE A;  5T5F A;  3DWO X;  4PR7 A;  5KAI O;  2ZFG A;  5E79 O;  5B5E O;  5ADX L;  3SYS A;  3PGU A;  3UU2 A;  1ZHW A;  3AAA A;  1GFM A;  3DZM A;  2WJR A;  2LFU A;  2M06 A;  3HW9 A;  8PRN A;  2GE4 A;  2KZ7 A;  2ODJ A;  4RJX A;  1GFP A;  3PGR A;  4KR8 A;  3G7G A;  3BS0 A;  1P4T A;  4XNL A;  3LK2 A;  3LK3 B;  3T24 A;  3A0B O;  5EE2 A;  5JDP A;  1G90 A;  2WJQ A;  4IL6 O;  2WVP A;  2R4L A;  5DL6 A;  3T0S A;  3KVD D;  4RL9 A;  3UAQ A;  1HXT A;  2R4P A;  3WI5 A;  2QEU A;  4FSP A;  5IYU A;  2M07 A;  4XNK A;  3BEY A;  3LK3 A;  3AA1 B;  4E1T A;  2R4O A;  4GCS A;  2JN8 A;  4FRT A;  1YS5 A;  5G26 A;  1ZHX A;  4LSF A;  2IWW A;  3BRZ A;  4RLC A;  2FGQ X;  1IZN B;  1Q9F A;  3DA3 A;  3FYX A;  3VZU X;  4AYI D;  2LHF A;  4FZM A;  3C1L A;  4G9Q A;  4G75 A;  1QJ9 A;  3AA6 A;  3JCU O;  2CWQ A;  4FRX A;  4AYM C;  4D64 A;  2PRR A;  2F1V A;  3O0E A;  4JFB A;  1Q9G A;  4LSE A;  3AA1 A;  4FSO A;  3POQ A;  4C69 X;  2R89 A;  3WI4 A;  2XTQ A;  4AKR A;  4C00 A;  4GCQ A;  1IZN A;  2XE5 A;  5FVN A;  4AUI A;  4BUM X;  2FGR A;  2Y0H A;  4GCP A;  4N74 A;  3AAE A;  3LK2 B;  5DIP A;  1H6S 1;  1KNC A;  4O4U A;  4O3X B;  4FOZ A;  1BH3 A;  4O3W A;  1HXX A;  1ZHT A;  4FZL A;  3TZG A;  5AFU L;  4AFK A;  3VE2 A;  4K3B A;  4LSI A;  2XE3 A;  2F1C X;  1OPF A;  1VKE A;  1PRN A;  1S5L O;  3QRC A;  1BXW A;  5AFU K;  3PF1 A;  4U9C A;  4E1S A;  3AA7 A;  3HOE A;  4D65 A;  3HOL A;  1ORM A;  2XE1 A;  4O3Z A;  4KRA A;  3PGS A;  1LW1 A;  3SZD A;  5PRN A;  7PRN A;  3PQS A;  6PRN A;  3T20 A;  3LK4 1;  1PHO A;  3AA6 B;  4RLB A;  3PRN A;  2X9K A;  5DL7 A;  2JMM A;  1MM5 A;  4AKM A;  1OSM A;  2ES9 A;  4JCH A;  3VZW X;  5DIK A;  2OYO A;  4AYE C;  3SY9 A;  2QTK A;  1ME5 A;  2JQY A;  2Y0L A;  2N2M A;  4AKR B;  3PQU A;  2J4U P;  2O4D A;  2N2L A;  2YNK A;  4FT6 A;  2ZLD A;  3NJT A;  4GF4 A;  3VY8 X;  3AAE B;  1GU9 A;  5GTH O;  1QJ8 A;  3QRA A;  2XMX A;  5KAF O;  2XTR A;  2YPV A;  5H2F O;  3GP6 A;  4K3C A;  4O3Y A;  3AA0 B;  4PJ0 O;  4D5U A;  2GMY A;  4KR4 A;  4B61 A;  2IWV A;  2W80 C;  2J1N A;  4LSH A;  5G38 A;  3HWB A;  4FES A;  3LVY A;  4C4V A;  2R88 A;  2XG6 A;  5TIS O;  4CTD A;  3AA7 B;  1THQ A;  2Y0K A;  2K0L A;  1GFN A;  3C5O A;  1GFQ A;  2AF7 A;  2MHL A;  4FZN A;  3AA0 A;  1E54 A;  1ZHY A;  4O4X A;  4FMS A;  3K19 A;  4GHB A;  2Y2X A;  2KXP A;  4UB8 O;  5GTI O;  1T1L A;  2KC0 A;  4AYN A;  2OUW A;  1QJP A;  3WU2 O;  4N75 A;  2XE2 A;  3BRY A;  3EMN X;  3UPG A;  5ADX K;  2PFX A;  3SYB A;  4N58 A;  2Y7S A;  3POR A;  3VY9 X;  3D7I A;  2R8A A;  1MPF A;  3KZI O;  2IJC A;  5B66 O;  4UB6 O;  4F4B A;  4Z3T A;  2F1T A;  5GV0 A;  2Q0T A;  2POR A;  3DWN A;  5G39 A;  2PRN A;  3NSG A;  4C4V B;  4G76 A;  3POX A;  2AXT O;  2OMF A;  4RJW A;  3SZV A;  3RBH A;  3LK4 2;  2O4V A;  1P8C A;  1MM4 A;  1ZHZ A;  5G3A A;  4O49 A;  4PUX A;  5D5D A;  1HXU A;  2R4N A;  3DA4 A;  5DL5 A;  3A0H O;  2K4T A;  4AZL A;  2KXP B;  1GFO A; 
#chains in the Genus database with same CATH homology
 5DL8 A;  4FUV A;  5G26 A;  1ZHX A;  4QQ1 A;  1LW1 A;  2Y2X A;  4GHB A;  3SZD A;  2KXP A;  4AYD C;  1BT9 A;  4LSF A;  5PRN A;  7PRN A;  3PQS A;  6PRN A;  3AAA B;  2FGQ X;  1IZN B;  3LK4 1;  1PHO A;  1Q9F A;  3DA3 A;  2KDY A;  3A2S X;  3FYX A;  3JTY A;  3VZU X;  2MNH A;  4N59 A;  3VE1 A;  3VZT X;  3AA6 B;  4RLB A;  4AYI D;  2LHF A;  3PRN A;  4FZM A;  5DL7 A;  3C1L A;  1MM5 A;  2JMM A;  2KZ7 B;  4AKM A;  4G9Q A;  2KC0 A;  2X27 X;  1OSM A;  2ES9 A;  4AYN A;  4JCH A;  2OUW A;  4G75 A;  5DIK A;  3V8U A;  1QJ9 A;  1QJP A;  3VZW X;  2OYO A;  3AA6 A;  4AYE C;  2ERV A;  3SY7 A;  3SY9 A;  2CWQ A;  2QTK A;  1ME5 A;  2XE2 A;  3EMN X;  2W81 C;  4FRX A;  4AYM C;  4D64 A;  2PRR A;  5ADX K;  3POU A;  2F1V A;  3O0E A;  2PFX A;  2Y0L A;  2N2M A;  4JFB A;  4N58 A;  5T5F A;  3SYB A;  1Q9G A;  2Y7S A;  4LSE A;  3AA1 A;  4AKR B;  3POR A;  3PQU A;  4FSO A;  3POQ A;  2J4U P;  3VY9 X;  2O4D A;  2N2L A;  2YNK A;  2ZFG A;  4C69 X;  3D7I A;  4FT6 A;  2ZLD A;  5ADX L;  1MPF A;  3WI4 A;  3SYS A;  2XTQ A;  4AKR A;  3UU2 A;  1ZHW A;  3AAA A;  1GFM A;  1IZN A;  2XE5 A;  4GCQ A;  4GF4 A;  3AAE B;  5FVN A;  3VY8 X;  4AUI A;  1GU9 A;  2IJC A;  1QJ8 A;  4BUM X;  2LFU A;  2FGR A;  2Y0H A;  3QRA A;  2XMX A;  4F4B A;  2M06 A;  3HW9 A;  4GCP A;  4Z3T A;  8PRN A;  2GE4 A;  3T20 A;  2F1T A;  2KZ7 A;  3AAE A;  2ODJ A;  4RJX A;  2XTR A;  2YPV A;  5GV0 A;  1GFP A;  3LK2 B;  2Q0T A;  3GP6 A;  2POR A;  4KR8 A;  5DIP A;  1H6S 1;  1KNC A;  4O3Y A;  4O4U A;  3AA0 B;  3G7G A;  4O3X B;  1P4T A;  4FOZ A;  2PRN A;  4D5U A;  3NSG A;  4XNL A;  1BH3 A;  3LK2 A;  2GMY A;  3LK3 B;  4KR4 A;  3T24 A;  4O3W A;  1HXX A;  1ZHT A;  4FZL A;  3TZG A;  4G76 A;  5EE2 A;  5AFU L;  5JDP A;  4AFK A;  3POX A;  4B61 A;  2W80 C;  2J1N A;  4LSH A;  3VE2 A;  3HWB A;  4FES A;  3LVY A;  2OMF A;  4LSI A;  4RJW A;  2XE3 A;  1G90 A;  2XG6 A;  1OPF A;  3SZV A;  1VKE A;  1PRN A;  5DL6 A;  3AA7 B;  1THQ A;  2Y0K A;  3LK4 2;  2O4V A;  3RBH A;  3T0S A;  3UPG A;  3KVD D;  4RL9 A;  2K0L A;  3QRC A;  1P8C A;  1GFN A;  3UAQ A;  1MM4 A;  1BXW A;  1ZHZ A;  5AFU K;  4RLC A;  4U9C A;  3C5O A;  4O49 A;  4E1S A;  1HXT A;  4PUX A;  1HXU A;  5D5D A;  3AA7 A;  3WI5 A;  3DA4 A;  3HOE A;  1GFQ A;  4D65 A;  2QEU A;  4FSP A;  5DL5 A;  5IYU A;  2AF7 A;  2MHL A;  4FZN A;  3AA0 A;  2M07 A;  3HOL A;  4XNK A;  1E54 A;  2K4T A;  1ZHY A;  4AZL A;  1ORM A;  3BEY A;  3LK3 A;  2KXP B;  2XE1 A;  3AA1 B;  4O3Z A;  4E1T A;  4GCS A;  2JN8 A;  1GFO A;  4FMS A;  4FRT A;  4KRA A;  3K19 A;  4O4X A;  1YS5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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