2KZ7A

Solution structure of the carmil cah3a/b domain bound to capping protein (cp)
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
275
structure length
275
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords F-actin-capping protein subunit alpha-1
publication title Solution structure of the CARMIL CAH3a/b domain bound to capping protein (CP)
rcsb
source organism Gallus gallus
total genus 75
structure length 275
sequence length 275
ec nomenclature
pdb deposition date 2010-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2kz7A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 2kz7A02
2KXPB 3LK3B 5ADXK 3AAEB 2KZ7A 3AA0A 3AA6A 1IZNA 4AKRA 3LK2B 3AA1A 3AAAA 3LK41 2KXPA 3AA7B 5AFUL 3LK3A 3AAEA 2KZ7B 3LK42 3LK2A 3AA0B 3AA6B 5ADXL 5AFUK 1IZNB 4AKRB 3AA1B 3AAAB 3AA7A
chains in the Genus database with same CATH superfamily
3TZGA 3QRAA 1GFPA 2PRRA 2ODJA 4FQEA 5B5EO 3BRZA 5JDPA 4FUVA 2WVPA 3VZWX 2W81C 4C4VA 1E54A 5B66O 4RLCA 4N74A 4AYNA 5ADXL 2KC0A 1S5LO 3PGRA 3JCUO 4C4VB 1QJ8A 4FT6A 2J4UP 3AA1A 1GFOA 2KXPA 2XG6A 3POQA 3T20A 2K4TA 2LHFA 1HXUA 2R8AA 4N75A 3AA1B 3VE1A 5DIPA 3UAQA 2O4DA 4RJXA 1MM5A 5KAFO 3FYXA 3BRYA 4B61A 3BEYA 4LSIA 8PRNA 3G7GA 4GF4A 2X9KA 3WI4A 2XE3A 1OPFA 5DL5A 2Q0TA 4N59A 4AUIA 1THQA 2MHLA 1QJPA 4AYID 3AA6A 3VY9X 3LK41 3VZUX 5PRNA 1ZHZA 1BT9A 4O3XB 3SYSA 5DL6A 3AA6B 2F1CX 4U9CA 5T5FA 3UU2A 5TISO 3SZDA 3A2SX 1ZHXA 4FZLA 2JN8A 3PQSA 3PRNA 1H6S1 2ZLDA 1OSMA 4PR7A 3C1LA 2XE2A 2ZFGA 4G75A 2Y2XA 5H2FO 3WI5A 4IL6O 3AA7A 2IWWA 1HXXA 3K19A 2LFUA 4GHBA 4Z3TA 2ERVA 5GTHO 2WJRA 5G39A 1LW1A 5D5DA 4KRAA 3AA7B 5AFUL 1YS5A 2R4OA 4C69X 2GE4A 3A0HO 5DL7A 4AZLA 2XE5A 4RL9A 1P4TA 1HXTA 1T16A 1GFNA 2AXTO 4F4BA 1BXWA 2KZ7A 3A0BO 1KNCA 5GTIO 3SZVA 3DWOX 1GFQA 3AAAA 4D5UA 2YPVA 4FRXA 4GCQA 2KZ7B 1BH3A 3AAAB 4E1TA 4RLBA 2KXPB 2F1TA 4CTDA 3GP6A 2GMYA 4AYEC 3PQUA 3HOEA 4JFBA 2PFXA 4K3BA 2O4VA 4AYDC 2Y0LA 4O3ZA 4FSPA 1P8CA 3HW9A 2R88A 2XE1A 5DIKA 2FGRA 2JMMA 3VZTX 1ZHWA 3LK3A 1MM4A 5G26A 3DA3A 2M06A 2XTQA 3DZMA 4AKMA 4G76A 2MNHA 4G9QA 2R4NA 3LK3B 4FZNA 1ORMA 3VE2A 2IJCA 1IZNA 1ME5A 2PORA 4E1SA 3VY8X 3AAEA 2XTRA 4LSHA 1IZNB 5KAIO 5G38A 4KR8A 2N2MA 3EMNX 5G3AA 2K0LA 4XNLA 3PGSA 1VKEA 3AAEB 5IYUA 2XMXA 2M07A 3AA0A 4GCPA 2JQYA 4D64A 2Y0KA 3C5OA 4FESA 4FSOA 1Q9GA 3BS0A 4FMSA 3V8UA 3AA0B 1GU9A 2X27X 3RBHA 2OMFA 3POXA 4KR4A 4PUXA 3UPGA 2J1NA 5E79O 5ADXK 3T0SA 4O3YA 2QTKA 4FZMA 4JCHA 4K3CA 4D65A 4UB8O 3O0EA 3DWNA 4FOZA 1PRNA 4XNKA 2ES9A 2AF7A 3QRCA 2YNKA 7PRNA 3HOLA 4FRTA 1QJ9A 4GCSA 5GV0A 2OUWA 3NJTA 2CWQA 6PRNA 3WU2O 4RJWA 2OYOA 3DA4A 2KDYA 3SYBA 2FGQX 1ZHTA 4O4XA 3LK2A 4AYMC 1ZHYA 4O4UA 5EE2A 3LVYA 4O49A 1PHOA 1T1LA 4LSFA 4AKRA 3LK2B 2IWVA 3PORA 2Y7SA 5DL8A 4N58A 3T24A 4BUMX 4AFKA 2PRNA 1MPFA 3HWBA 4AKRB 1Q9FA 3KVDD 4UB6O 3SY7A 3KZIO 4PJ0O 2R89A 3NSGA 2QEUA 2N2LA 2WJQA 3POUA 3D7IA 3PF1A 2R4LA 2R4PA 4QQ1A 3PGUA 4O3WA 1G90A 2Y0HA 3JTYA 2F1VA 5FVNA 3SY9A 3LK42 4LSEA 1GFMA 5AFUK 2W80C 4C00A
chains in the Genus database with same CATH topology
5T5FA 3UU2A 3TZGA 3QRAA 3HW9A 3SZDA 3A2SX 1ZHXA 2XE1A 2YNKA 3QRCA 4FZLA 2JN8A 3PQSA 7PRNA 5DIKA 2FGRA 2JMMA 1H6S1 3PRNA 1GFPA 2PRRA 2ZLDA 2ODJA 1OSMA 5JDPA 3C1LA 4FUVA 3VZWX 1ZHWA 3LK3A 1MM4A 3HOLA 3VZTX 2W81C 1QJ9A 4FRTA 2XE2A 3DA3A 2M06A 2XTQA 4GCSA 5G26A 2OUWA 2ZFGA 1E54A 5GV0A 4AKMA 4RLCA 4G75A 4G76A 2Y2XA 4AYNA 5ADXL 3WI5A 2MNHA 2KC0A 2CWQA 4G9QA 3AA7A 6PRNA 1HXXA 3K19A 4RJWA 2LFUA 3LK3B 4GHBA 2OYOA 4FZNA 1ORMA 4Z3TA 2ERVA 3VE2A 1QJ8A 4FT6A 2IJCA 3DA4A 2J4UP 1IZNA 3AA1A 1ME5A 1GFOA 2PORA 2KXPA 4E1SA 1LW1A 5D5DA 4KRAA 2KDYA 3VY8X 3SYBA 3AA7B 5AFUL 1YS5A 2XG6A 3POQA 4C69X 2FGQX 2GE4A 3AAEA 3T20A 2K4TA 5DL7A 1ZHTA 2XTRA 4O4XA 4AZLA 3LK2A 2LHFA 1HXUA 2XE5A 4AKRB 4LSHA 4RL9A 4AYMC 1IZNB 1ZHYA 4O4UA 1P4TA 3AA1B 4KR8A 2N2MA 1HXTA 3VE1A 5EE2A 3LVYA 3EMNX 4O49A 5DIPA 1GFNA 4F4BA 2K0LA 4XNLA 1VKEA 1PHOA 3AAEB 1BXWA 2KZ7A 3UAQA 1KNCA 2XMXA 3SZVA 2M07A 3AA0A 5IYUA 2O4DA 4LSFA 2ES9A 4AKRA 3LK2B 4GCPA 1GFQA 1MM5A 3AAAA 3PORA 2Y7SA 5DL8A 4N58A 3T24A 4D5UA 4BUMX 2YPVA 4AFKA 4D64A 2Y0KA 3FYXA 3C5OA 4FESA 4FRXA 4B61A 3BEYA 2PRNA 4GCQA 1MPFA 4FSOA 3HWBA 1Q9GA 2KZ7B 4LSIA 4FMSA 3V8UA 3AA0B 8PRNA 1BH3A 1GU9A 2X27X 3G7GA 3RBHA 1Q9FA 2OMFA 3KVDD 3POXA 4GF4A 3SY7A 3AAAB 4KR4A 3WI4A 4PUXA 3UPGA 4E1TA 2XE3A 4RLBA 1OPFA 2KXPB 5DL5A 2Q0TA 2J1NA 2F1TA 4N59A 3NSGA 2QEUA 4AUIA 5ADXK 2N2LA 3GP6A 2GMYA 1THQA 3POUA 2MHLA 3D7IA 1QJPA 4O3YA 3T0SA 3AA6A 4AYEC 4AYID 2QTKA 4FZMA 4JCHA 3PQUA 4QQ1A 3VY9X 3HOEA 4D65A 4JFBA 3LK41 4O3WA 2PFXA 1G90A 3VZUX 2O4VA 5PRNA 1ZHZA 2Y0HA 3JTYA 2F1VA 4AYDC 2Y0LA 5FVNA 1BT9A 3O0EA 4O3XB 4O3ZA 3SYSA 3SY9A 3LK42 4LSEA 1GFMA 5DL6A 4FOZA 4FSPA 1P8CA 1PRNA 5AFUK 3AA6B 2W80C 4XNKA 4U9CA 4RJXA 2AF7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KXP B;  3LK3 B;  5ADX K;  3AAE B;  2KZ7 A;  3AA0 A;  3AA6 A;  1IZN A;  4AKR A;  3LK2 B;  3AA1 A;  3AAA A;  3LK4 1;  2KXP A;  3AA7 B;  5AFU L;  3LK3 A;  3AAE A;  2KZ7 B;  3LK4 2;  3LK2 A;  3AA0 B;  3AA6 B;  5ADX L;  5AFU K;  1IZN B;  4AKR B;  3AA1 B;  3AAA B;  3AA7 A; 
#chains in the Genus database with same CATH topology
 3TZG A;  3QRA A;  1GFP A;  2PRR A;  2ODJ A;  4FQE A;  5B5E O;  3BRZ A;  5JDP A;  4FUV A;  2WVP A;  3VZW X;  2W81 C;  4C4V A;  1E54 A;  5B66 O;  4RLC A;  4N74 A;  4AYN A;  5ADX L;  2KC0 A;  1S5L O;  3PGR A;  3JCU O;  4C4V B;  1QJ8 A;  4FT6 A;  2J4U P;  3AA1 A;  1GFO A;  2KXP A;  2XG6 A;  3POQ A;  3T20 A;  2K4T A;  2LHF A;  1HXU A;  2R8A A;  4N75 A;  3AA1 B;  3VE1 A;  5DIP A;  3UAQ A;  2O4D A;  4RJX A;  1MM5 A;  5KAF O;  3FYX A;  3BRY A;  4B61 A;  3BEY A;  4LSI A;  8PRN A;  3G7G A;  4GF4 A;  2X9K A;  3WI4 A;  2XE3 A;  1OPF A;  5DL5 A;  2Q0T A;  4N59 A;  4AUI A;  1THQ A;  2MHL A;  1QJP A;  4AYI D;  3AA6 A;  3VY9 X;  3LK4 1;  3VZU X;  5PRN A;  1ZHZ A;  1BT9 A;  4O3X B;  3SYS A;  5DL6 A;  3AA6 B;  2F1C X;  4U9C A;  5T5F A;  3UU2 A;  5TIS O;  3SZD A;  3A2S X;  1ZHX A;  4FZL A;  2JN8 A;  3PQS A;  3PRN A;  1H6S 1;  2ZLD A;  1OSM A;  4PR7 A;  3C1L A;  2XE2 A;  2ZFG A;  4G75 A;  2Y2X A;  5H2F O;  3WI5 A;  4IL6 O;  3AA7 A;  2IWW A;  1HXX A;  3K19 A;  2LFU A;  4GHB A;  4Z3T A;  2ERV A;  5GTH O;  2WJR A;  5G39 A;  1LW1 A;  5D5D A;  4KRA A;  3AA7 B;  5AFU L;  1YS5 A;  2R4O A;  4C69 X;  2GE4 A;  3A0H O;  5DL7 A;  4AZL A;  2XE5 A;  4RL9 A;  1P4T A;  1HXT A;  1T16 A;  1GFN A;  2AXT O;  4F4B A;  1BXW A;  2KZ7 A;  3A0B O;  1KNC A;  5GTI O;  3SZV A;  3DWO X;  1GFQ A;  3AAA A;  4D5U A;  2YPV A;  4FRX A;  4GCQ A;  2KZ7 B;  1BH3 A;  3AAA B;  4E1T A;  4RLB A;  2KXP B;  2F1T A;  4CTD A;  3GP6 A;  2GMY A;  4AYE C;  3PQU A;  3HOE A;  4JFB A;  2PFX A;  4K3B A;  2O4V A;  4AYD C;  2Y0L A;  4O3Z A;  4FSP A;  1P8C A;  3HW9 A;  2R88 A;  2XE1 A;  5DIK A;  2FGR A;  2JMM A;  3VZT X;  1ZHW A;  3LK3 A;  1MM4 A;  5G26 A;  3DA3 A;  2M06 A;  2XTQ A;  3DZM A;  4AKM A;  4G76 A;  2MNH A;  4G9Q A;  2R4N A;  3LK3 B;  4FZN A;  1ORM A;  3VE2 A;  2IJC A;  1IZN A;  1ME5 A;  2POR A;  4E1S A;  3VY8 X;  3AAE A;  2XTR A;  4LSH A;  1IZN B;  5KAI O;  5G38 A;  4KR8 A;  2N2M A;  3EMN X;  5G3A A;  2K0L A;  4XNL A;  3PGS A;  1VKE A;  3AAE B;  5IYU A;  2XMX A;  2M07 A;  3AA0 A;  4GCP A;  2JQY A;  4D64 A;  2Y0K A;  3C5O A;  4FES A;  4FSO A;  1Q9G A;  3BS0 A;  4FMS A;  3V8U A;  3AA0 B;  1GU9 A;  2X27 X;  3RBH A;  2OMF A;  3POX A;  4KR4 A;  4PUX A;  3UPG A;  2J1N A;  5E79 O;  5ADX K;  3T0S A;  4O3Y A;  2QTK A;  4FZM A;  4JCH A;  4K3C A;  4D65 A;  4UB8 O;  3O0E A;  3DWN A;  4FOZ A;  1PRN A;  4XNK A;  2ES9 A;  2AF7 A;  3QRC A;  2YNK A;  7PRN A;  3HOL A;  4FRT A;  1QJ9 A;  4GCS A;  5GV0 A;  2OUW A;  3NJT A;  2CWQ A;  6PRN A;  3WU2 O;  4RJW A;  2OYO A;  3DA4 A;  2KDY A;  3SYB A;  2FGQ X;  1ZHT A;  4O4X A;  3LK2 A;  4AYM C;  1ZHY A;  4O4U A;  5EE2 A;  3LVY A;  4O49 A;  1PHO A;  1T1L A;  4LSF A;  4AKR A;  3LK2 B;  2IWV A;  3POR A;  2Y7S A;  5DL8 A;  4N58 A;  3T24 A;  4BUM X;  4AFK A;  2PRN A;  1MPF A;  3HWB A;  4AKR B;  1Q9F A;  3KVD D;  4UB6 O;  3SY7 A;  3KZI O;  4PJ0 O;  2R89 A;  3NSG A;  2QEU A;  2N2L A;  2WJQ A;  3POU A;  3D7I A;  3PF1 A;  2R4L A;  2R4P A;  4QQ1 A;  3PGU A;  4O3W A;  1G90 A;  2Y0H A;  3JTY A;  2F1V A;  5FVN A;  3SY9 A;  3LK4 2;  4LSE A;  1GFM A;  5AFU K;  2W80 C;  4C00 A; 
#chains in the Genus database with same CATH homology
 5T5F A;  3UU2 A;  3TZG A;  3QRA A;  3HW9 A;  3SZD A;  3A2S X;  1ZHX A;  2XE1 A;  2YNK A;  3QRC A;  4FZL A;  2JN8 A;  3PQS A;  7PRN A;  5DIK A;  2FGR A;  2JMM A;  1H6S 1;  3PRN A;  1GFP A;  2PRR A;  2ZLD A;  2ODJ A;  1OSM A;  5JDP A;  3C1L A;  4FUV A;  3VZW X;  1ZHW A;  3LK3 A;  1MM4 A;  3HOL A;  3VZT X;  2W81 C;  1QJ9 A;  4FRT A;  2XE2 A;  3DA3 A;  2M06 A;  2XTQ A;  4GCS A;  5G26 A;  2OUW A;  2ZFG A;  1E54 A;  5GV0 A;  4AKM A;  4RLC A;  4G75 A;  4G76 A;  2Y2X A;  4AYN A;  5ADX L;  3WI5 A;  2MNH A;  2KC0 A;  2CWQ A;  4G9Q A;  3AA7 A;  6PRN A;  1HXX A;  3K19 A;  4RJW A;  2LFU A;  3LK3 B;  4GHB A;  2OYO A;  4FZN A;  1ORM A;  4Z3T A;  2ERV A;  3VE2 A;  1QJ8 A;  4FT6 A;  2IJC A;  3DA4 A;  2J4U P;  1IZN A;  3AA1 A;  1ME5 A;  1GFO A;  2POR A;  2KXP A;  4E1S A;  1LW1 A;  5D5D A;  4KRA A;  2KDY A;  3VY8 X;  3SYB A;  3AA7 B;  5AFU L;  1YS5 A;  2XG6 A;  3POQ A;  4C69 X;  2FGQ X;  2GE4 A;  3AAE A;  3T20 A;  2K4T A;  5DL7 A;  1ZHT A;  2XTR A;  4O4X A;  4AZL A;  3LK2 A;  2LHF A;  1HXU A;  2XE5 A;  4AKR B;  4LSH A;  4RL9 A;  4AYM C;  1IZN B;  1ZHY A;  4O4U A;  1P4T A;  3AA1 B;  4KR8 A;  2N2M A;  1HXT A;  3VE1 A;  5EE2 A;  3LVY A;  3EMN X;  4O49 A;  5DIP A;  1GFN A;  4F4B A;  2K0L A;  4XNL A;  1VKE A;  1PHO A;  3AAE B;  1BXW A;  2KZ7 A;  3UAQ A;  1KNC A;  2XMX A;  3SZV A;  2M07 A;  3AA0 A;  5IYU A;  2O4D A;  4LSF A;  2ES9 A;  4AKR A;  3LK2 B;  4GCP A;  1GFQ A;  1MM5 A;  3AAA A;  3POR A;  2Y7S A;  5DL8 A;  4N58 A;  3T24 A;  4D5U A;  4BUM X;  2YPV A;  4AFK A;  4D64 A;  2Y0K A;  3FYX A;  3C5O A;  4FES A;  4FRX A;  4B61 A;  3BEY A;  2PRN A;  4GCQ A;  1MPF A;  4FSO A;  3HWB A;  1Q9G A;  2KZ7 B;  4LSI A;  4FMS A;  3V8U A;  3AA0 B;  8PRN A;  1BH3 A;  1GU9 A;  2X27 X;  3G7G A;  3RBH A;  1Q9F A;  2OMF A;  3KVD D;  3POX A;  4GF4 A;  3SY7 A;  3AAA B;  4KR4 A;  3WI4 A;  4PUX A;  3UPG A;  4E1T A;  2XE3 A;  4RLB A;  1OPF A;  2KXP B;  5DL5 A;  2Q0T A;  2J1N A;  2F1T A;  4N59 A;  3NSG A;  2QEU A;  4AUI A;  5ADX K;  2N2L A;  3GP6 A;  2GMY A;  1THQ A;  3POU A;  2MHL A;  3D7I A;  1QJP A;  4O3Y A;  3T0S A;  3AA6 A;  4AYE C;  4AYI D;  2QTK A;  4FZM A;  4JCH A;  3PQU A;  4QQ1 A;  3VY9 X;  3HOE A;  4D65 A;  4JFB A;  3LK4 1;  4O3W A;  2PFX A;  1G90 A;  3VZU X;  2O4V A;  5PRN A;  1ZHZ A;  2Y0H A;  3JTY A;  2F1V A;  4AYD C;  2Y0L A;  5FVN A;  1BT9 A;  3O0E A;  4O3X B;  4O3Z A;  3SYS A;  3SY9 A;  3LK4 2;  4LSE A;  1GFM A;  5DL6 A;  4FOZ A;  4FSP A;  1P8C A;  1PRN A;  5AFU K;  3AA6 B;  2W80 C;  4XNK A;  4U9C A;  4RJX A;  2AF7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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