2KZ7A

Solution structure of the carmil cah3a/b domain bound to capping protein (cp)
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
275
structure length
275
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords F-actin-capping protein subunit alpha-1
publication title Solution structure of the CARMIL CAH3a/b domain bound to capping protein (CP)
rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 75
structure length 275
sequence length 275
ec nomenclature
pdb deposition date 2010-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2kz7A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 2kz7A02
3AAAB 4AKRA 5ADXK 3AA1A 2KZ7A 3AA0A 3AAEB 3AA6A 5AFUL 3AA7B 3LK2B 3LK3A 5AFUK 4AKRB 2KZ7B 3AA0B 3AA1B 3LK41 1IZNA 3AA6B 2KXPA 3LK3B 3AAAA 3AAEA 1IZNB 3LK42 2KXPB 5ADXL 3AA7A 3LK2A
chains in the Genus database with same CATH superfamily
4N58A 4FZLA 4KRAA 4KR8A 2XG6A 4XNKA 2ODJA 2ZLDA 1BXWA 3A2SX 4FSOA 3GP6A 4FMSA 4FOZA 2IWVA 3BEYA 3BRZA 1IZNB 3VE1A 1E54A 1ORMA 1MM5A 1Q9GA 2Y0LA 2ES9A 1T16A 5G39A 3QRAA 4GCPA 2J1NA 3AA7B 5T5FA 3T0SA 4LSEA 3D7IA 4LSHA 3AA0B 3V8UA 2M07A 3PQSA 5E79O 4KR4A 2KXPB 1MPFA 1VKEA 4GHBA 1G90A 3AAEB 1T1LA 2Y7SA 3A0HO 2W81C 3LK41 1IZNA 1P4TA 4AZLA 2R88A 3VE2A 5DIPA 4U9CA 3HOLA 5KAFO 3POUA 4K3BA 4AYEC 4D64A 1MM4A 2XE2A 4PR7A 5G3AA 3PORA 4GCQA 2KXPA 3LVYA 4FRXA 4O3ZA 4O4XA 3AAEA 3BRYA 2ZFGA 2JN8A 3AAAB 1QJ9A 2PRNA 5KAIO 2GMYA 5DL5A 5AFUL 1ZHWA 4PJ0O 1Q9FA 3T24A 4AFKA 4N75A 2K4TA 3A0BO 4XNLA 5G38A 4AYMC 3T20A 2XMXA 3LK2A 2MNHA 3AA6A 2R89A 5TISO 1GFNA 2YNKA 2O4DA 1ZHXA 3KZIO 3WU2O 4AYID 2GE4A 3SYBA 4AKMA 3KVDD 2XTRA 5H2FO 5GTHO 3HOEA 1BT9A 2W80C 3HWBA 1KNCA 3DWNA 2N2LA 3SY7A 2O4VA 2Y2XA 3RBHA 2WJQA 2OMFA 2XE1A 7PRNA 4O3XB 3WI4A 4C00A 4O49A 2KC0A 4RJXA 4C69X 5DL6A 3TZGA 4BUMX 3UU2A 3VY9X 3EMNX 2F1VA 2JMMA 5PRNA 1P8CA 4N74A 3DA3A 1OSMA 4Z3TA 1S5LO 4FUVA 2PORA 3AA7A 1GU9A 6PRNA 3AA0A 1QJPA 3SZDA 4AKRB 1HXXA 2KZ7B 4N59A 1ZHYA 5FVNA 4LSFA 2WJRA 3VZWX 2AXTO 4UB8O 4RL9A 4FQEA 4E1SA 5B5EO 4D5UA 2XE5A 3PRNA 5JDPA 3BS0A 5AFUK 1H6S1 5DL7A 4JFBA 2QEUA 3PGUA 2F1CX 3DWOX 3POXA 4RLCA 1LW1A 3NJTA 5IYUA 1QJ8A 2OUWA 5ADXL 5GV0A 3PGSA 4AKRA 2IWWA 4D65A 2R4NA 4B61A 1YS5A 2LFUA 3AA1B 3PGRA 4UB6O 4RLBA 3VY8X 1PRNA 4FT6A 1GFPA 5DIKA 1HXTA 3AAAA 2YPVA 2WVPA 4F4BA 3SYSA 3K19A 2N2MA 4GCSA 5GTIO 4E1TA 2K0LA 3SZVA 2M06A 4G9QA 2X27X 2R4LA 4AUIA 3SY9A 4O3WA 3LK3B 8PRNA 5B66O 2R4PA 5DL8A 4K3CA 4O3YA 1GFMA 3LK42 4PUXA 3DA4A 4G75A 3C1LA 3AA1A 2AF7A 2R4OA 2ERVA 1BH3A 3FYXA 4CTDA 4FESA 2CWQA 2FGRA 3UPGA 3G7GA 3PF1A 4FSPA 3WI5A 2X9KA 3C5OA 3O0EA 2XE3A 4QQ1A 2QTKA 5EE2A 2MHLA 3POQA 5G26A 4AYNA 1PHOA 3LK3A 3DZMA 2KDYA 2Q0TA 4FRTA 3PQUA 4FZNA 3JCUO 3JTYA 2PRRA 2OYOA 4IL6O 2F1TA 3HW9A 5D5DA 4C4VB 2JQYA 3VZUX 2LHFA 2FGQX 4RJWA 1ZHZA 1GFOA 3LK2B 3VZTX 3AA6B 4LSIA 2J4UP 1GFQA 3NSGA 2Y0KA 4JCHA 4G76A 3QRCA 1THQA 1HXUA 5ADXK 2R8AA 2KZ7A 4FZMA 1ME5A 1OPFA 2PFXA 1ZHTA 3UAQA 4C4VA 4O4UA 2IJCA 2Y0HA 4AYDC 2XTQA 4GF4A
chains in the Genus database with same CATH topology
3AAAB 1QJ9A 1GU9A 4FZLA 2PRNA 4G75A 4KRAA 4N58A 3C1LA 2GMYA 3AA1A 6PRNA 3AA0A 4KR8A 2AF7A 5DL5A 2XG6A 4XNKA 2ODJA 5AFUL 1QJPA 2ERVA 1BH3A 3FYXA 3SZDA 4FESA 2ZLDA 1BXWA 4AKRB 1HXXA 1ZHWA 2KZ7B 1Q9FA 2CWQA 3T24A 3A2SX 4N59A 4AFKA 2FGRA 4FSOA 3GP6A 4FMSA 1ZHYA 4FOZA 5FVNA 3UPGA 3G7GA 4LSFA 2K4TA 4FSPA 3WI5A 3VZWX 3C5OA 3BEYA 3O0EA 2XE3A 1IZNB 3VE1A 4QQ1A 1E54A 1ORMA 4RL9A 2QTKA 4XNLA 5EE2A 4AYMC 1MM5A 2MHLA 3T20A 2XMXA 3LK2A 1Q9GA 4E1SA 2Y0LA 3POQA 2ES9A 4D5UA 5G26A 2MNHA 3QRAA 4GCPA 4AYNA 3AA6A 2J1NA 2XE5A 3AA7B 1PHOA 3PRNA 5T5FA 3LK3A 1GFNA 2KDYA 2YNKA 3T0SA 5JDPA 2O4DA 5AFUK 3D7IA 1ZHXA 2Q0TA 4LSEA 4LSHA 3AA0B 1H6S1 4AYID 2GE4A 4FRTA 5DL7A 4JFBA 3PQUA 4FZNA 3SYBA 3V8UA 3JTYA 2PRRA 2OYOA 2QEUA 3POXA 2M07A 4RLCA 1LW1A 4AKMA 3KVDD 3PQSA 2F1TA 5IYUA 4KR4A 2XTRA 3HW9A 5D5DA 1QJ8A 2KXPB 2OUWA 5ADXL 5GV0A 3HOEA 1MPFA 2LHFA 3VZUX 4AKRA 2FGQX 1VKEA 4GHBA 4RJWA 1G90A 4D65A 1BT9A 2W80C 3HWBA 3AAEB 1KNCA 4B61A 1YS5A 1ZHZA 1GFOA 2LFUA 2N2LA 3LK2B 2Y7SA 2W81C 3VZTX 3AA1B 3SY7A 2O4VA 3LK41 1IZNA 2Y2XA 1P4TA 3AA6B 4RLBA 3RBHA 4AZLA 3VE2A 2OMFA 1PRNA 2XE1A 1GFPA 4FT6A 4LSIA 3VY8X 5DIPA 2J4UP 5DIKA 1GFQA 4U9CA 1HXTA 3AAAA 2YPVA 3NSGA 2Y0KA 4JCHA 3HOLA 4G76A 4F4BA 3SYSA 7PRNA 3QRCA 1THQA 3POUA 1HXUA 4O3XB 3WI4A 4O49A 5ADXK 2KC0A 4RJXA 4AYEC 4C69X 2KZ7A 5DL6A 1MM4A 3K19A 2N2MA 3TZGA 2XE2A 4BUMX 4D64A 3UU2A 4GCSA 4FZMA 3VY9X 3EMNX 4E1TA 2K0LA 2F1VA 3SZVA 1ME5A 1OPFA 2JMMA 2M06A 2PFXA 1P8CA 5PRNA 4G9QA 2X27X 1ZHTA 3PORA 4GCQA 4AUIA 3UAQA 3SY9A 2KXPA 3LVYA 4FRXA 4O3ZA 3DA3A 4O4UA 4O3WA 3LK3B 2IJCA 1OSMA 8PRNA 4Z3TA 2Y0HA 4O4XA 4FUVA 4AYDC 2XTQA 3AAEA 5DL8A 4O3YA 1GFMA 3LK42 4GF4A 4PUXA 2PORA 3DA4A 2ZFGA 3AA7A 2JN8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AAA B;  4AKR A;  5ADX K;  3AA1 A;  2KZ7 A;  3AA0 A;  3AAE B;  3AA6 A;  5AFU L;  3AA7 B;  3LK2 B;  3LK3 A;  5AFU K;  4AKR B;  2KZ7 B;  3AA0 B;  3AA1 B;  3LK4 1;  1IZN A;  3AA6 B;  2KXP A;  3LK3 B;  3AAA A;  3AAE A;  1IZN B;  3LK4 2;  2KXP B;  5ADX L;  3AA7 A;  3LK2 A; 
#chains in the Genus database with same CATH topology
 4N58 A;  4FZL A;  4KRA A;  4KR8 A;  2XG6 A;  4XNK A;  2ODJ A;  2ZLD A;  1BXW A;  3A2S X;  4FSO A;  3GP6 A;  4FMS A;  4FOZ A;  2IWV A;  3BEY A;  3BRZ A;  1IZN B;  3VE1 A;  1E54 A;  1ORM A;  1MM5 A;  1Q9G A;  2Y0L A;  2ES9 A;  1T16 A;  5G39 A;  3QRA A;  4GCP A;  2J1N A;  3AA7 B;  5T5F A;  3T0S A;  4LSE A;  3D7I A;  4LSH A;  3AA0 B;  3V8U A;  2M07 A;  3PQS A;  5E79 O;  4KR4 A;  2KXP B;  1MPF A;  1VKE A;  4GHB A;  1G90 A;  3AAE B;  1T1L A;  2Y7S A;  3A0H O;  2W81 C;  3LK4 1;  1IZN A;  1P4T A;  4AZL A;  2R88 A;  3VE2 A;  5DIP A;  4U9C A;  3HOL A;  5KAF O;  3POU A;  4K3B A;  4AYE C;  4D64 A;  1MM4 A;  2XE2 A;  4PR7 A;  5G3A A;  3POR A;  4GCQ A;  2KXP A;  3LVY A;  4FRX A;  4O3Z A;  4O4X A;  3AAE A;  3BRY A;  2ZFG A;  2JN8 A;  3AAA B;  1QJ9 A;  2PRN A;  5KAI O;  2GMY A;  5DL5 A;  5AFU L;  1ZHW A;  4PJ0 O;  1Q9F A;  3T24 A;  4AFK A;  4N75 A;  2K4T A;  3A0B O;  4XNL A;  5G38 A;  4AYM C;  3T20 A;  2XMX A;  3LK2 A;  2MNH A;  3AA6 A;  2R89 A;  5TIS O;  1GFN A;  2YNK A;  2O4D A;  1ZHX A;  3KZI O;  3WU2 O;  4AYI D;  2GE4 A;  3SYB A;  4AKM A;  3KVD D;  2XTR A;  5H2F O;  5GTH O;  3HOE A;  1BT9 A;  2W80 C;  3HWB A;  1KNC A;  3DWN A;  2N2L A;  3SY7 A;  2O4V A;  2Y2X A;  3RBH A;  2WJQ A;  2OMF A;  2XE1 A;  7PRN A;  4O3X B;  3WI4 A;  4C00 A;  4O49 A;  2KC0 A;  4RJX A;  4C69 X;  5DL6 A;  3TZG A;  4BUM X;  3UU2 A;  3VY9 X;  3EMN X;  2F1V A;  2JMM A;  5PRN A;  1P8C A;  4N74 A;  3DA3 A;  1OSM A;  4Z3T A;  1S5L O;  4FUV A;  2POR A;  3AA7 A;  1GU9 A;  6PRN A;  3AA0 A;  1QJP A;  3SZD A;  4AKR B;  1HXX A;  2KZ7 B;  4N59 A;  1ZHY A;  5FVN A;  4LSF A;  2WJR A;  3VZW X;  2AXT O;  4UB8 O;  4RL9 A;  4FQE A;  4E1S A;  5B5E O;  4D5U A;  2XE5 A;  3PRN A;  5JDP A;  3BS0 A;  5AFU K;  1H6S 1;  5DL7 A;  4JFB A;  2QEU A;  3PGU A;  2F1C X;  3DWO X;  3POX A;  4RLC A;  1LW1 A;  3NJT A;  5IYU A;  1QJ8 A;  2OUW A;  5ADX L;  5GV0 A;  3PGS A;  4AKR A;  2IWW A;  4D65 A;  2R4N A;  4B61 A;  1YS5 A;  2LFU A;  3AA1 B;  3PGR A;  4UB6 O;  4RLB A;  3VY8 X;  1PRN A;  4FT6 A;  1GFP A;  5DIK A;  1HXT A;  3AAA A;  2YPV A;  2WVP A;  4F4B A;  3SYS A;  3K19 A;  2N2M A;  4GCS A;  5GTI O;  4E1T A;  2K0L A;  3SZV A;  2M06 A;  4G9Q A;  2X27 X;  2R4L A;  4AUI A;  3SY9 A;  4O3W A;  3LK3 B;  8PRN A;  5B66 O;  2R4P A;  5DL8 A;  4K3C A;  4O3Y A;  1GFM A;  3LK4 2;  4PUX A;  3DA4 A;  4G75 A;  3C1L A;  3AA1 A;  2AF7 A;  2R4O A;  2ERV A;  1BH3 A;  3FYX A;  4CTD A;  4FES A;  2CWQ A;  2FGR A;  3UPG A;  3G7G A;  3PF1 A;  4FSP A;  3WI5 A;  2X9K A;  3C5O A;  3O0E A;  2XE3 A;  4QQ1 A;  2QTK A;  5EE2 A;  2MHL A;  3POQ A;  5G26 A;  4AYN A;  1PHO A;  3LK3 A;  3DZM A;  2KDY A;  2Q0T A;  4FRT A;  3PQU A;  4FZN A;  3JCU O;  3JTY A;  2PRR A;  2OYO A;  4IL6 O;  2F1T A;  3HW9 A;  5D5D A;  4C4V B;  2JQY A;  3VZU X;  2LHF A;  2FGQ X;  4RJW A;  1ZHZ A;  1GFO A;  3LK2 B;  3VZT X;  3AA6 B;  4LSI A;  2J4U P;  1GFQ A;  3NSG A;  2Y0K A;  4JCH A;  4G76 A;  3QRC A;  1THQ A;  1HXU A;  5ADX K;  2R8A A;  2KZ7 A;  4FZM A;  1ME5 A;  1OPF A;  2PFX A;  1ZHT A;  3UAQ A;  4C4V A;  4O4U A;  2IJC A;  2Y0H A;  4AYD C;  2XTQ A;  4GF4 A; 
#chains in the Genus database with same CATH homology
 3AAA B;  1QJ9 A;  1GU9 A;  4FZL A;  2PRN A;  4G75 A;  4KRA A;  4N58 A;  3C1L A;  2GMY A;  3AA1 A;  6PRN A;  3AA0 A;  4KR8 A;  2AF7 A;  5DL5 A;  2XG6 A;  4XNK A;  2ODJ A;  5AFU L;  1QJP A;  2ERV A;  1BH3 A;  3FYX A;  3SZD A;  4FES A;  2ZLD A;  1BXW A;  4AKR B;  1HXX A;  1ZHW A;  2KZ7 B;  1Q9F A;  2CWQ A;  3T24 A;  3A2S X;  4N59 A;  4AFK A;  2FGR A;  4FSO A;  3GP6 A;  4FMS A;  1ZHY A;  4FOZ A;  5FVN A;  3UPG A;  3G7G A;  4LSF A;  2K4T A;  4FSP A;  3WI5 A;  3VZW X;  3C5O A;  3BEY A;  3O0E A;  2XE3 A;  1IZN B;  3VE1 A;  4QQ1 A;  1E54 A;  1ORM A;  4RL9 A;  2QTK A;  4XNL A;  5EE2 A;  4AYM C;  1MM5 A;  2MHL A;  3T20 A;  2XMX A;  3LK2 A;  1Q9G A;  4E1S A;  2Y0L A;  3POQ A;  2ES9 A;  4D5U A;  5G26 A;  2MNH A;  3QRA A;  4GCP A;  4AYN A;  3AA6 A;  2J1N A;  2XE5 A;  3AA7 B;  1PHO A;  3PRN A;  5T5F A;  3LK3 A;  1GFN A;  2KDY A;  2YNK A;  3T0S A;  5JDP A;  2O4D A;  5AFU K;  3D7I A;  1ZHX A;  2Q0T A;  4LSE A;  4LSH A;  3AA0 B;  1H6S 1;  4AYI D;  2GE4 A;  4FRT A;  5DL7 A;  4JFB A;  3PQU A;  4FZN A;  3SYB A;  3V8U A;  3JTY A;  2PRR A;  2OYO A;  2QEU A;  3POX A;  2M07 A;  4RLC A;  1LW1 A;  4AKM A;  3KVD D;  3PQS A;  2F1T A;  5IYU A;  4KR4 A;  2XTR A;  3HW9 A;  5D5D A;  1QJ8 A;  2KXP B;  2OUW A;  5ADX L;  5GV0 A;  3HOE A;  1MPF A;  2LHF A;  3VZU X;  4AKR A;  2FGQ X;  1VKE A;  4GHB A;  4RJW A;  1G90 A;  4D65 A;  1BT9 A;  2W80 C;  3HWB A;  3AAE B;  1KNC A;  4B61 A;  1YS5 A;  1ZHZ A;  1GFO A;  2LFU A;  2N2L A;  3LK2 B;  2Y7S A;  2W81 C;  3VZT X;  3AA1 B;  3SY7 A;  2O4V A;  3LK4 1;  1IZN A;  2Y2X A;  1P4T A;  3AA6 B;  4RLB A;  3RBH A;  4AZL A;  3VE2 A;  2OMF A;  1PRN A;  2XE1 A;  1GFP A;  4FT6 A;  4LSI A;  3VY8 X;  5DIP A;  2J4U P;  5DIK A;  1GFQ A;  4U9C A;  1HXT A;  3AAA A;  2YPV A;  3NSG A;  2Y0K A;  4JCH A;  3HOL A;  4G76 A;  4F4B A;  3SYS A;  7PRN A;  3QRC A;  1THQ A;  3POU A;  1HXU A;  4O3X B;  3WI4 A;  4O49 A;  5ADX K;  2KC0 A;  4RJX A;  4AYE C;  4C69 X;  2KZ7 A;  5DL6 A;  1MM4 A;  3K19 A;  2N2M A;  3TZG A;  2XE2 A;  4BUM X;  4D64 A;  3UU2 A;  4GCS A;  4FZM A;  3VY9 X;  3EMN X;  4E1T A;  2K0L A;  2F1V A;  3SZV A;  1ME5 A;  1OPF A;  2JMM A;  2M06 A;  2PFX A;  1P8C A;  5PRN A;  4G9Q A;  2X27 X;  1ZHT A;  3POR A;  4GCQ A;  4AUI A;  3UAQ A;  3SY9 A;  2KXP A;  3LVY A;  4FRX A;  4O3Z A;  3DA3 A;  4O4U A;  4O3W A;  3LK3 B;  2IJC A;  1OSM A;  8PRN A;  4Z3T A;  2Y0H A;  4O4X A;  4FUV A;  4AYD C;  2XTQ A;  3AAE A;  5DL8 A;  4O3Y A;  1GFM A;  3LK4 2;  4GF4 A;  4PUX A;  2POR A;  3DA4 A;  2ZFG A;  3AA7 A;  2JN8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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