2KZ7A

Solution structure of the carmil cah3a/b domain bound to capping protein (cp)
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
275
structure length
275
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of the CARMIL CAH3a/b domain bound to capping protein (CP)
rcsb
source organism Gallus gallus
molecule tags Protein binding
molecule keywords F-actin-capping protein subunit alpha-1
total genus 75
structure length 275
sequence length 275
ec nomenclature
pdb deposition date 2010-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2kz7A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 2kz7A02
1IZNA 3LK42 1IZNB 5AFUK 3AA7B 3AA7A 5AFUL 2KXPA 5ADXL 2KXPB 4AKRB 3AA0B 4AKRA 5ADXK 3LK3B 3AA0A 2KZ7B 3LK3A 2KZ7A 3AA6B 3AAEA 3AA6A 3LK2A 3AAEB 3LK2B 3AA1A 3AAAA 3AA1B 3AAAB 3LK41
chains in the Genus database with same CATH superfamily
3NSGA 2O4DA 4AYNA 2FGQX 2XE3A 3A2SX 2AXTO 2WVPA 3LK42 5GTIO 3SY7A 4CTDA 4KR4A 3HW9A 5KAIO 4AYID 4FSPA 3DWNA 4C69X 4RJXA 3PGUA 1GFNA 3PGSA 4N58A 4FUVA 1MPFA 1THQA 2Y0HA 3PQUA 4O3ZA 4UB8O 1PHOA 5DL6A 2W81C 3VE2A 4AKRB 3PGRA 2AF7A 2IWWA 4O49A 1P8CA 4O4UA 2LHFA 3AA0A 4K3BA 2PORA 4FRTA 3T20A 2KZ7A 4O4XA 3WU2O 3AA6B 4PR7A 1T1LA 4PJ0O 3KZIO 4G76A 4UB6O 3VE1A 3BRYA 1QJ9A 2M07A 4AZLA 2JQYA 3AA1A 2Y0KA 3NJTA 3SY9A 7PRNA 1MM4A 4B61A 5IYUA 3PRNA 1BH3A 4E1TA 3LK41 3HWBA 4FT6A 3T0SA 2F1TA 5TISO 3VY8X 2XE2A 4LSFA 4O3XB 4AFKA 4C00A 5B5EO 3A0BO 2MNHA 3UAQA 1IZNB 1MM5A 4AYEC 3V8UA 3UPGA 1T16A 4BUMX 4N74A 3C1LA 3DZMA 2KXPA 1ZHYA 3POQA 4GCPA 1OPFA 2R8AA 5DL5A 5PRNA 4F4BA 2K0LA 3HOLA 5D5DA 4FRXA 3RBHA 4E1SA 4K3CA 4C4VA 5FVNA 2X27X 2GMYA 4XNKA 1LW1A 3LK3A 4G75A 2CWQA 3HOEA 5GTHO 2JN8A 3G7GA 2R4LA 4FSOA 4QQ1A 1Q9FA 3PQSA 8PRNA 5T5FA 2Y2XA 2KC0A 2WJQA 4O3WA 1G90A 3LK2A 1P4TA 3GP6A 3DWOX 3QRAA 4LSEA 2ERVA 4RJWA 4GF4A 4D64A 1GFPA 5EE2A 2R4NA 3AA1B 3EMNX 2PRNA 2JMMA 3A0HO 4IL6O 4O3YA 2Y7SA 4AYDC 3BS0A 3JTYA 2IJCA 2PRRA 2N2LA 5DIKA 1ORMA 2F1CX 2ODJA 3BRZA 3FYXA 4AKMA 4D5UA 1HXTA 2MHLA 2QEUA 2IWVA 1S5LO 1KNCA 2KDYA 5AFUK 1ZHXA 1H6S1 2Q0TA 3AA7B 4JCHA 4FZNA 2WJRA 3POXA 3QRCA 3SYBA 5GV0A 1QJPA 5ADXL 1GFQA 2KXPB 2OUWA 4AUIA 2F1VA 2OMFA 2XG6A 2J1NA 3BEYA 2XMXA 1ZHTA 4AKRA 1GU9A 5ADXK 5DL8A 5G39A 4FESA 2KZ7B 2PFXA 2R89A 4FOZA 3SZVA 2LFUA 1HXUA 1HXXA 3JCUO 2K4TA 2ZFGA 4U9CA 5G3AA 3AAEA 3AA6A 1Q9GA 2XTRA 4N59A 4D65A 4Z3TA 3DA3A 3LK2B 4GCSA 3PORA 2Y0LA 3VZTX 4KR8A 3AAAA 2FGRA 3PF1A 5DIPA 2XE5A 4FZMA 3TZGA 3WI5A 4JFBA 4FZLA 3SZDA 1QJ8A 1VKEA 5G38A 6PRNA 1ZHWA 5DL7A 3KVDD 3LVYA 5KAFO 1IZNA 3C5OA 2ZLDA 3D7IA 1OSMA 3DA4A 5G26A 4FMSA 3AA7A 1BXWA 3T24A 2ES9A 2R88A 3K19A 3VZUX 5AFUL 2N2MA 1GFMA 5E79O 4G9QA 4PUXA 3POUA 4LSIA 2M06A 1BT9A 3AA0B 4GHBA 3VZWX 3LK3B 2W80C 4LSHA 4C4VB 2XTQA 4RLCA 5B66O 2J4UP 2R4OA 1ME5A 5H2FO 4KRAA 5JDPA 2QTKA 2R4PA 2XE1A 1PRNA 2O4VA 1YS5A 3VY9X 3SYSA 1GFOA 3AAEB 2X9KA 4N75A 2OYOA 4RL9A 4XNLA 3O0EA 3WI4A 1ZHZA 4GCQA 3UU2A 4FQEA 2GE4A 2YNKA 3AAAB 4AYMC 4RLBA 1E54A 2YPVA
chains in the Genus database with same CATH topology
3NSGA 2O4DA 4AYNA 2FGQX 2XE3A 3A2SX 3LK42 3SY7A 4KR4A 3HW9A 4AYID 4FSPA 4C69X 4RJXA 1GFNA 4N58A 4FUVA 1MPFA 1THQA 2Y0HA 3PQUA 4O3ZA 1PHOA 5DL6A 2W81C 3VE2A 4AKRB 2AF7A 4O49A 1P8CA 4O4UA 2LHFA 3AA0A 2PORA 4FRTA 3T20A 2KZ7A 4O4XA 3AA6B 4G76A 3VE1A 4AZLA 1QJ9A 2M07A 3AA1A 2Y0KA 3SY9A 7PRNA 1MM4A 4B61A 5IYUA 3PRNA 1BH3A 4E1TA 3LK41 3HWBA 4FT6A 3T0SA 2F1TA 3VY8X 2XE2A 4LSFA 4O3XB 4AFKA 3UAQA 2MNHA 4AYEC 1IZNB 1MM5A 3V8UA 3UPGA 4BUMX 3C1LA 2KXPA 1ZHYA 3POQA 4GCPA 1OPFA 5DL5A 5PRNA 4F4BA 2K0LA 3HOLA 5D5DA 4FRXA 3RBHA 4E1SA 5FVNA 2X27X 2GMYA 4XNKA 1LW1A 3LK3A 4G75A 2CWQA 3HOEA 2JN8A 3G7GA 4FSOA 8PRNA 4QQ1A 1Q9FA 3PQSA 5T5FA 2Y2XA 2KC0A 4O3WA 1G90A 3LK2A 1P4TA 3GP6A 3QRAA 4LSEA 2ERVA 4RJWA 4GF4A 4D64A 1GFPA 5EE2A 3AA1B 3EMNX 2PRNA 2JMMA 4O3YA 2Y7SA 4AYDC 3JTYA 2IJCA 2PRRA 2N2LA 5DIKA 1ORMA 2ODJA 4AKMA 3FYXA 4D5UA 1HXTA 2MHLA 2QEUA 2KDYA 1KNCA 4JCHA 5AFUK 1ZHXA 1H6S1 2Q0TA 3AA7B 4XNLA 4FZNA 3SYBA 3POXA 3QRCA 5GV0A 1QJPA 5ADXL 1GFQA 2KXPB 2OUWA 4AUIA 2F1VA 2OMFA 2XG6A 2J1NA 3BEYA 2XMXA 1ZHTA 4AKRA 1GU9A 5ADXK 5DL8A 4FESA 2KZ7B 2PFXA 4FOZA 3SZVA 2LFUA 1HXUA 1HXXA 2K4TA 2ZFGA 4U9CA 3AAEA 3AA6A 1Q9GA 2XTRA 4N59A 4D65A 4Z3TA 3DA3A 3LK2B 4GCSA 3PORA 2Y0LA 3VZTX 4KR8A 3AAAA 2FGRA 5DIPA 2XE5A 4FZMA 3TZGA 3WI5A 4JFBA 4FZLA 3SZDA 1QJ8A 1VKEA 6PRNA 1ZHWA 5DL7A 3KVDD 3LVYA 1IZNA 3C5OA 2ZLDA 3D7IA 1OSMA 3DA4A 5G26A 4FMSA 3AA7A 1BXWA 3T24A 2ES9A 3VZUX 3K19A 5AFUL 2N2MA 1GFMA 4G9QA 4PUXA 3POUA 4LSIA 2M06A 1BT9A 3AA0B 4GHBA 3VZWX 3LK3B 2W80C 4LSHA 2J4UP 2XTQA 4RLCA 1ME5A 4KRAA 5JDPA 2QTKA 2XE1A 1PRNA 2O4VA 1YS5A 3VY9X 3SYSA 1GFOA 3AAEB 4RL9A 2OYOA 3WI4A 3O0EA 1ZHZA 4GCQA 3UU2A 4AYMC 2GE4A 2YNKA 3AAAB 4RLBA 1E54A 2YPVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IZN A;  3LK4 2;  1IZN B;  5AFU K;  3AA7 B;  3AA7 A;  5AFU L;  2KXP A;  5ADX L;  2KXP B;  4AKR B;  3AA0 B;  4AKR A;  5ADX K;  3LK3 B;  3AA0 A;  2KZ7 B;  3LK3 A;  2KZ7 A;  3AA6 B;  3AAE A;  3AA6 A;  3LK2 A;  3AAE B;  3LK2 B;  3AA1 A;  3AAA A;  3AA1 B;  3AAA B;  3LK4 1; 
#chains in the Genus database with same CATH topology
 3NSG A;  2O4D A;  4AYN A;  2FGQ X;  2XE3 A;  3A2S X;  2AXT O;  2WVP A;  3LK4 2;  5GTI O;  3SY7 A;  4CTD A;  4KR4 A;  3HW9 A;  5KAI O;  4AYI D;  4FSP A;  3DWN A;  4C69 X;  4RJX A;  3PGU A;  1GFN A;  3PGS A;  4N58 A;  4FUV A;  1MPF A;  1THQ A;  2Y0H A;  3PQU A;  4O3Z A;  4UB8 O;  1PHO A;  5DL6 A;  2W81 C;  3VE2 A;  4AKR B;  3PGR A;  2AF7 A;  2IWW A;  4O49 A;  1P8C A;  4O4U A;  2LHF A;  3AA0 A;  4K3B A;  2POR A;  4FRT A;  3T20 A;  2KZ7 A;  4O4X A;  3WU2 O;  3AA6 B;  4PR7 A;  1T1L A;  4PJ0 O;  3KZI O;  4G76 A;  4UB6 O;  3VE1 A;  3BRY A;  1QJ9 A;  2M07 A;  4AZL A;  2JQY A;  3AA1 A;  2Y0K A;  3NJT A;  3SY9 A;  7PRN A;  1MM4 A;  4B61 A;  5IYU A;  3PRN A;  1BH3 A;  4E1T A;  3LK4 1;  3HWB A;  4FT6 A;  3T0S A;  2F1T A;  5TIS O;  3VY8 X;  2XE2 A;  4LSF A;  4O3X B;  4AFK A;  4C00 A;  5B5E O;  3A0B O;  2MNH A;  3UAQ A;  1IZN B;  1MM5 A;  4AYE C;  3V8U A;  3UPG A;  1T16 A;  4BUM X;  4N74 A;  3C1L A;  3DZM A;  2KXP A;  1ZHY A;  3POQ A;  4GCP A;  1OPF A;  2R8A A;  5DL5 A;  5PRN A;  4F4B A;  2K0L A;  3HOL A;  5D5D A;  4FRX A;  3RBH A;  4E1S A;  4K3C A;  4C4V A;  5FVN A;  2X27 X;  2GMY A;  4XNK A;  1LW1 A;  3LK3 A;  4G75 A;  2CWQ A;  3HOE A;  5GTH O;  2JN8 A;  3G7G A;  2R4L A;  4FSO A;  4QQ1 A;  1Q9F A;  3PQS A;  8PRN A;  5T5F A;  2Y2X A;  2KC0 A;  2WJQ A;  4O3W A;  1G90 A;  3LK2 A;  1P4T A;  3GP6 A;  3DWO X;  3QRA A;  4LSE A;  2ERV A;  4RJW A;  4GF4 A;  4D64 A;  1GFP A;  5EE2 A;  2R4N A;  3AA1 B;  3EMN X;  2PRN A;  2JMM A;  3A0H O;  4IL6 O;  4O3Y A;  2Y7S A;  4AYD C;  3BS0 A;  3JTY A;  2IJC A;  2PRR A;  2N2L A;  5DIK A;  1ORM A;  2F1C X;  2ODJ A;  3BRZ A;  3FYX A;  4AKM A;  4D5U A;  1HXT A;  2MHL A;  2QEU A;  2IWV A;  1S5L O;  1KNC A;  2KDY A;  5AFU K;  1ZHX A;  1H6S 1;  2Q0T A;  3AA7 B;  4JCH A;  4FZN A;  2WJR A;  3POX A;  3QRC A;  3SYB A;  5GV0 A;  1QJP A;  5ADX L;  1GFQ A;  2KXP B;  2OUW A;  4AUI A;  2F1V A;  2OMF A;  2XG6 A;  2J1N A;  3BEY A;  2XMX A;  1ZHT A;  4AKR A;  1GU9 A;  5ADX K;  5DL8 A;  5G39 A;  4FES A;  2KZ7 B;  2PFX A;  2R89 A;  4FOZ A;  3SZV A;  2LFU A;  1HXU A;  1HXX A;  3JCU O;  2K4T A;  2ZFG A;  4U9C A;  5G3A A;  3AAE A;  3AA6 A;  1Q9G A;  2XTR A;  4N59 A;  4D65 A;  4Z3T A;  3DA3 A;  3LK2 B;  4GCS A;  3POR A;  2Y0L A;  3VZT X;  4KR8 A;  3AAA A;  2FGR A;  3PF1 A;  5DIP A;  2XE5 A;  4FZM A;  3TZG A;  3WI5 A;  4JFB A;  4FZL A;  3SZD A;  1QJ8 A;  1VKE A;  5G38 A;  6PRN A;  1ZHW A;  5DL7 A;  3KVD D;  3LVY A;  5KAF O;  1IZN A;  3C5O A;  2ZLD A;  3D7I A;  1OSM A;  3DA4 A;  5G26 A;  4FMS A;  3AA7 A;  1BXW A;  3T24 A;  2ES9 A;  2R88 A;  3K19 A;  3VZU X;  5AFU L;  2N2M A;  1GFM A;  5E79 O;  4G9Q A;  4PUX A;  3POU A;  4LSI A;  2M06 A;  1BT9 A;  3AA0 B;  4GHB A;  3VZW X;  3LK3 B;  2W80 C;  4LSH A;  4C4V B;  2XTQ A;  4RLC A;  5B66 O;  2J4U P;  2R4O A;  1ME5 A;  5H2F O;  4KRA A;  5JDP A;  2QTK A;  2R4P A;  2XE1 A;  1PRN A;  2O4V A;  1YS5 A;  3VY9 X;  3SYS A;  1GFO A;  3AAE B;  2X9K A;  4N75 A;  2OYO A;  4RL9 A;  4XNL A;  3O0E A;  3WI4 A;  1ZHZ A;  4GCQ A;  3UU2 A;  4FQE A;  2GE4 A;  2YNK A;  3AAA B;  4AYM C;  4RLB A;  1E54 A;  2YPV A; 
#chains in the Genus database with same CATH homology
 3NSG A;  2O4D A;  4AYN A;  2FGQ X;  2XE3 A;  3A2S X;  3LK4 2;  3SY7 A;  4KR4 A;  3HW9 A;  4AYI D;  4FSP A;  4C69 X;  4RJX A;  1GFN A;  4N58 A;  4FUV A;  1MPF A;  1THQ A;  2Y0H A;  3PQU A;  4O3Z A;  1PHO A;  5DL6 A;  2W81 C;  3VE2 A;  4AKR B;  2AF7 A;  4O49 A;  1P8C A;  4O4U A;  2LHF A;  3AA0 A;  2POR A;  4FRT A;  3T20 A;  2KZ7 A;  4O4X A;  3AA6 B;  4G76 A;  3VE1 A;  4AZL A;  1QJ9 A;  2M07 A;  3AA1 A;  2Y0K A;  3SY9 A;  7PRN A;  1MM4 A;  4B61 A;  5IYU A;  3PRN A;  1BH3 A;  4E1T A;  3LK4 1;  3HWB A;  4FT6 A;  3T0S A;  2F1T A;  3VY8 X;  2XE2 A;  4LSF A;  4O3X B;  4AFK A;  3UAQ A;  2MNH A;  4AYE C;  1IZN B;  1MM5 A;  3V8U A;  3UPG A;  4BUM X;  3C1L A;  2KXP A;  1ZHY A;  3POQ A;  4GCP A;  1OPF A;  5DL5 A;  5PRN A;  4F4B A;  2K0L A;  3HOL A;  5D5D A;  4FRX A;  3RBH A;  4E1S A;  5FVN A;  2X27 X;  2GMY A;  4XNK A;  1LW1 A;  3LK3 A;  4G75 A;  2CWQ A;  3HOE A;  2JN8 A;  3G7G A;  4FSO A;  8PRN A;  4QQ1 A;  1Q9F A;  3PQS A;  5T5F A;  2Y2X A;  2KC0 A;  4O3W A;  1G90 A;  3LK2 A;  1P4T A;  3GP6 A;  3QRA A;  4LSE A;  2ERV A;  4RJW A;  4GF4 A;  4D64 A;  1GFP A;  5EE2 A;  3AA1 B;  3EMN X;  2PRN A;  2JMM A;  4O3Y A;  2Y7S A;  4AYD C;  3JTY A;  2IJC A;  2PRR A;  2N2L A;  5DIK A;  1ORM A;  2ODJ A;  4AKM A;  3FYX A;  4D5U A;  1HXT A;  2MHL A;  2QEU A;  2KDY A;  1KNC A;  4JCH A;  5AFU K;  1ZHX A;  1H6S 1;  2Q0T A;  3AA7 B;  4XNL A;  4FZN A;  3SYB A;  3POX A;  3QRC A;  5GV0 A;  1QJP A;  5ADX L;  1GFQ A;  2KXP B;  2OUW A;  4AUI A;  2F1V A;  2OMF A;  2XG6 A;  2J1N A;  3BEY A;  2XMX A;  1ZHT A;  4AKR A;  1GU9 A;  5ADX K;  5DL8 A;  4FES A;  2KZ7 B;  2PFX A;  4FOZ A;  3SZV A;  2LFU A;  1HXU A;  1HXX A;  2K4T A;  2ZFG A;  4U9C A;  3AAE A;  3AA6 A;  1Q9G A;  2XTR A;  4N59 A;  4D65 A;  4Z3T A;  3DA3 A;  3LK2 B;  4GCS A;  3POR A;  2Y0L A;  3VZT X;  4KR8 A;  3AAA A;  2FGR A;  5DIP A;  2XE5 A;  4FZM A;  3TZG A;  3WI5 A;  4JFB A;  4FZL A;  3SZD A;  1QJ8 A;  1VKE A;  6PRN A;  1ZHW A;  5DL7 A;  3KVD D;  3LVY A;  1IZN A;  3C5O A;  2ZLD A;  3D7I A;  1OSM A;  3DA4 A;  5G26 A;  4FMS A;  3AA7 A;  1BXW A;  3T24 A;  2ES9 A;  3VZU X;  3K19 A;  5AFU L;  2N2M A;  1GFM A;  4G9Q A;  4PUX A;  3POU A;  4LSI A;  2M06 A;  1BT9 A;  3AA0 B;  4GHB A;  3VZW X;  3LK3 B;  2W80 C;  4LSH A;  2J4U P;  2XTQ A;  4RLC A;  1ME5 A;  4KRA A;  5JDP A;  2QTK A;  2XE1 A;  1PRN A;  2O4V A;  1YS5 A;  3VY9 X;  3SYS A;  1GFO A;  3AAE B;  4RL9 A;  2OYO A;  3WI4 A;  3O0E A;  1ZHZ A;  4GCQ A;  3UU2 A;  4AYM C;  2GE4 A;  2YNK A;  3AAA B;  4RLB A;  1E54 A;  2YPV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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