2KZ7A

Solution structure of the carmil cah3a/b domain bound to capping protein (cp)
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
275
structure length
275
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of the CARMIL CAH3a/b domain bound to capping protein (CP)
rcsb
source organism Gallus gallus
molecule tags Protein binding
molecule keywords F-actin-capping protein subunit alpha-1
total genus 75
structure length 275
sequence length 275
ec nomenclature
pdb deposition date 2010-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2kz7A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 2kz7A02
5ADXL 5ADXK 3LK41 3AA0B 2KZ7B 3AA1B 4AKRA 1IZNB 3AAEA 5AFUK 3AA7B 2KZ7A 3AA1A 4AKRB 5AFUL 2KXPA 3AA6A 3LK2B 3LK3B 2KXPB 3AA6B 3AA0A 3AAEB 3LK3A 3AAAB 1IZNA 3AA7A 3LK42 3AAAA 3LK2A
chains in the Genus database with same CATH superfamily
1GFQA 2R4LA 2R89A 4GCPA 4FRTA 4RLCA 4Z3TA 4AKMA 3SZDA 2F1CX 4AKRA 5DL5A 2ERVA 4G75A 5GTIO 2R4PA 3VE1A 2AXTO 1THQA 4XNLA 3KVDD 4PJ0O 5T5FA 3G7GA 4G76A 3HWBA 4FZMA 3T24A 1HXTA 2OUWA 3C5OA 2R8AA 2Y7SA 3AA1A 3PQUA 1ZHTA 4FUVA 3KZIO 1ZHYA 3PQSA 3SYBA 2Y2XA 2CWQA 3WI5A 3EMNX 2ZFGA 1ME5A 1Q9FA 4AYNA 4B61A 4RJWA 3UU2A 3LVYA 2N2MA 2XE3A 3DWNA 8PRNA 2KC0A 2XE2A 3O0EA 4G9QA 1BH3A 2W81C 4FESA 4N58A 4KR4A 1BXWA 3VY9X 2XE5A 5G39A 3AAAA 2R88A 5ADXK 2JQYA 1GFMA 1QJ9A 2MNHA 1YS5A 4KRAA 4O3ZA 4XNKA 2JMMA 2IWVA 4AYEC 2O4DA 1H6S1 3RBHA 3POXA 3PRNA 4N75A 2J1NA 4C4VB 3UPGA 4O3XB 1HXXA 1IZNB 5E79O 1ZHWA 2F1TA 3SY9A 5ADXL 4O3YA 2Q0TA 3WI4A 3POUA 4D65A 3AAEA 1GFNA 4E1SA 3DZMA 2GMYA 4AUIA 2IJCA 3AA7B 4N74A 5IYUA 3T20A 2Y0LA 1MM5A 4FSPA 1ZHXA 4O3WA 3LK2B 4GCSA 1VKEA 5FVNA 4AYID 5DIKA 3WU2O 4UB8O 3AA6B 5DIPA 3VY8X 3AAEB 4CTDA 3T0SA 4O4XA 4LSIA 4LSHA 2M06A 1LW1A 2KDYA 3AAAB 1IZNA 3AA7A 3DWOX 3NJTA 1Q9GA 3PGSA 4JFBA 2ODJA 2XTQA 4FSOA 4PR7A 3BRZA 5DL8A 4AFKA 4D5UA 1BT9A 1E54A 3JCUO 2QEUA 5D5DA 2OYOA 3BEYA 3SZVA 3LK41 2N2LA 2WVPA 5GTHO 2KZ7B 2ZLDA 3FYXA 4E1TA 4RJXA 2Y0HA 3AA1B 4LSEA 2W80C 5KAFO 3A0HO 1OPFA 1PHOA 1KNCA 5G26A 2WJQA 4C69X 3TZGA 1T1LA 3C1LA 2PRNA 3BRYA 5AFUK 1GU9A 5DL6A 3POQA 2R4OA 2XMXA 2FGRA 1P4TA 2YPVA 2IWWA 3JTYA 2KZ7A 2GE4A 4AYDC 4FQEA 2F1VA 2YNKA 4LSFA 2KXPA 2LFUA 2MHLA 2XTRA 3PF1A 2R4NA 3BS0A 4K3CA 4O49A 1GFOA 3UAQA 3LK3B 3SY7A 2KXPB 3AA0A 4FZLA 2LHFA 4C4VA 5G3AA 1T16A 1MPFA 2WJRA 3DA3A 2J4UP 1ORMA 4RLBA 3VE2A 3QRAA 3PGRA 1HXUA 4O4UA 5B5EO 3PGUA 6PRNA 3LK2A 4D64A 3D7IA 4QQ1A 3HOEA 5JDPA 1MM4A 1G90A 2FGQX 3VZTX 4U9CA 3AA0B 5B66O 5H2FO 5DL7A 1OSMA 5G38A 4AZLA 2PRRA 4GHBA 2PFXA 2Y0KA 2K4TA 4K3BA 4UB6O 3SYSA 4IL6O 2K0LA 2OMFA 4FRXA 5EE2A 4AYMC 3A2SX 3HOLA 3HW9A 4FZNA 4GF4A 5KAIO 4C00A 3A0BO 4FMSA 3V8UA 2M07A 2XG6A 4N59A 3QRCA 5AFUL 4KR8A 4AKRB 1GFPA 1P8CA 3AA6A 2PORA 5GV0A 1ZHZA 4JCHA 1QJPA 4FT6A 4FOZA 4RL9A 2AF7A 4PUXA 1S5LO 3LK3A 3VZWX 5PRNA 3DA4A 3K19A 3LK42 3GP6A 2X9KA 3NSGA 2ES9A 5TISO 4BUMX 7PRNA 2JN8A 3VZUX 4GCQA 2QTKA 2XE1A 4F4BA 2O4VA 1PRNA 3PORA 2X27X 1QJ8A
chains in the Genus database with same CATH topology
1GFQA 4RLCA 4GCPA 4Z3TA 4FRTA 4AKMA 3SZDA 5DL5A 4AKRA 2ERVA 4G75A 3VE1A 4XNLA 1THQA 5T5FA 3KVDD 3G7GA 4G76A 3HWBA 4FZMA 3T24A 1HXTA 2OUWA 3C5OA 2Y7SA 3AA1A 3PQUA 1ZHTA 4FUVA 1ZHYA 3PQSA 3SYBA 2Y2XA 2CWQA 3WI5A 3EMNX 2ZFGA 1ME5A 1Q9FA 4AYNA 4B61A 4RJWA 3UU2A 3LVYA 2N2MA 2XE3A 8PRNA 2KC0A 2XE2A 3O0EA 4G9QA 1BH3A 2W81C 4FESA 4N58A 4KR4A 1BXWA 3VY9X 2XE5A 3AAAA 5ADXL 5ADXK 4O3ZA 1GFMA 1QJ9A 2MNHA 1YS5A 4KRAA 4XNKA 4AYEC 2JMMA 2O4DA 1H6S1 3RBHA 3POXA 3PRNA 3UPGA 2J1NA 4O3XB 1HXXA 1IZNB 3SY9A 1ZHWA 2F1TA 4O3YA 2Q0TA 3WI4A 3POUA 4D65A 3AAEA 1GFNA 4E1SA 2GMYA 4AUIA 2IJCA 3AA7B 5IYUA 3T20A 2Y0LA 1MM5A 4FSPA 1ZHXA 4O3WA 3LK2B 4GCSA 1VKEA 5FVNA 5DIKA 3AA6B 5DIPA 3VY8X 3AAEB 3T0SA 4O4XA 4LSIA 4LSHA 2M06A 1LW1A 2KDYA 3AAAB 1IZNA 3AA7A 3VE2A 4JFBA 1Q9GA 4AYID 2ODJA 2XTQA 4FSOA 5DL8A 4AFKA 4D5UA 1BT9A 1E54A 2QEUA 5D5DA 2OYOA 3BEYA 3SZVA 3LK41 2N2LA 2KZ7B 2ZLDA 3FYXA 4E1TA 4RJXA 2Y0HA 3AA1B 4LSEA 2W80C 1OPFA 1PHOA 1KNCA 5G26A 4C69X 3TZGA 3C1LA 2PRNA 5AFUK 1GU9A 5DL6A 3POQA 2XMXA 2FGRA 1P4TA 2YPVA 3JTYA 2KZ7A 2GE4A 4AYDC 2F1VA 2YNKA 4LSFA 2KXPA 2LFUA 2MHLA 2XTRA 3V8UA 4O49A 3UAQA 1GFOA 3LK3B 3SY7A 2KXPB 3AA0A 4FZLA 2LHFA 1MPFA 3DA3A 2J4UP 1ORMA 4RLBA 3QRAA 4O4UA 1HXUA 6PRNA 3LK2A 4D64A 3D7IA 4QQ1A 3HOEA 5JDPA 1MM4A 1G90A 2FGQX 3VZTX 4U9CA 3AA0B 5DL7A 1OSMA 4AZLA 2PRRA 4GHBA 2PFXA 2Y0KA 2K4TA 3SYSA 2K0LA 2OMFA 4FRXA 5EE2A 4AYMC 3A2SX 3HOLA 3HW9A 4FZNA 4GF4A 4FMSA 2M07A 2XG6A 4N59A 3QRCA 5AFUL 4KR8A 4AKRB 1GFPA 1P8CA 3AA6A 2PORA 5GV0A 1ZHZA 4JCHA 1QJPA 4FT6A 4FOZA 4RL9A 2AF7A 4PUXA 3LK3A 3VZWX 5PRNA 3DA4A 3K19A 3LK42 3GP6A 3NSGA 4BUMX 2ES9A 7PRNA 2JN8A 3VZUX 4GCQA 2QTKA 2XE1A 4F4BA 2O4VA 1PRNA 3PORA 2X27X 1QJ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5ADX L;  5ADX K;  3LK4 1;  3AA0 B;  2KZ7 B;  3AA1 B;  4AKR A;  1IZN B;  3AAE A;  5AFU K;  3AA7 B;  2KZ7 A;  3AA1 A;  4AKR B;  5AFU L;  2KXP A;  3AA6 A;  3LK2 B;  3LK3 B;  2KXP B;  3AA6 B;  3AA0 A;  3AAE B;  3LK3 A;  3AAA B;  1IZN A;  3AA7 A;  3LK4 2;  3AAA A;  3LK2 A; 
#chains in the Genus database with same CATH topology
 1GFQ A;  2R4L A;  2R89 A;  4GCP A;  4FRT A;  4RLC A;  4Z3T A;  4AKM A;  3SZD A;  2F1C X;  4AKR A;  5DL5 A;  2ERV A;  4G75 A;  5GTI O;  2R4P A;  3VE1 A;  2AXT O;  1THQ A;  4XNL A;  3KVD D;  4PJ0 O;  5T5F A;  3G7G A;  4G76 A;  3HWB A;  4FZM A;  3T24 A;  1HXT A;  2OUW A;  3C5O A;  2R8A A;  2Y7S A;  3AA1 A;  3PQU A;  1ZHT A;  4FUV A;  3KZI O;  1ZHY A;  3PQS A;  3SYB A;  2Y2X A;  2CWQ A;  3WI5 A;  3EMN X;  2ZFG A;  1ME5 A;  1Q9F A;  4AYN A;  4B61 A;  4RJW A;  3UU2 A;  3LVY A;  2N2M A;  2XE3 A;  3DWN A;  8PRN A;  2KC0 A;  2XE2 A;  3O0E A;  4G9Q A;  1BH3 A;  2W81 C;  4FES A;  4N58 A;  4KR4 A;  1BXW A;  3VY9 X;  2XE5 A;  5G39 A;  3AAA A;  2R88 A;  5ADX K;  2JQY A;  1GFM A;  1QJ9 A;  2MNH A;  1YS5 A;  4KRA A;  4O3Z A;  4XNK A;  2JMM A;  2IWV A;  4AYE C;  2O4D A;  1H6S 1;  3RBH A;  3POX A;  3PRN A;  4N75 A;  2J1N A;  4C4V B;  3UPG A;  4O3X B;  1HXX A;  1IZN B;  5E79 O;  1ZHW A;  2F1T A;  3SY9 A;  5ADX L;  4O3Y A;  2Q0T A;  3WI4 A;  3POU A;  4D65 A;  3AAE A;  1GFN A;  4E1S A;  3DZM A;  2GMY A;  4AUI A;  2IJC A;  3AA7 B;  4N74 A;  5IYU A;  3T20 A;  2Y0L A;  1MM5 A;  4FSP A;  1ZHX A;  4O3W A;  3LK2 B;  4GCS A;  1VKE A;  5FVN A;  4AYI D;  5DIK A;  3WU2 O;  4UB8 O;  3AA6 B;  5DIP A;  3VY8 X;  3AAE B;  4CTD A;  3T0S A;  4O4X A;  4LSI A;  4LSH A;  2M06 A;  1LW1 A;  2KDY A;  3AAA B;  1IZN A;  3AA7 A;  3DWO X;  3NJT A;  1Q9G A;  3PGS A;  4JFB A;  2ODJ A;  2XTQ A;  4FSO A;  4PR7 A;  3BRZ A;  5DL8 A;  4AFK A;  4D5U A;  1BT9 A;  1E54 A;  3JCU O;  2QEU A;  5D5D A;  2OYO A;  3BEY A;  3SZV A;  3LK4 1;  2N2L A;  2WVP A;  5GTH O;  2KZ7 B;  2ZLD A;  3FYX A;  4E1T A;  4RJX A;  2Y0H A;  3AA1 B;  4LSE A;  2W80 C;  5KAF O;  3A0H O;  1OPF A;  1PHO A;  1KNC A;  5G26 A;  2WJQ A;  4C69 X;  3TZG A;  1T1L A;  3C1L A;  2PRN A;  3BRY A;  5AFU K;  1GU9 A;  5DL6 A;  3POQ A;  2R4O A;  2XMX A;  2FGR A;  1P4T A;  2YPV A;  2IWW A;  3JTY A;  2KZ7 A;  2GE4 A;  4AYD C;  4FQE A;  2F1V A;  2YNK A;  4LSF A;  2KXP A;  2LFU A;  2MHL A;  2XTR A;  3PF1 A;  2R4N A;  3BS0 A;  4K3C A;  4O49 A;  1GFO A;  3UAQ A;  3LK3 B;  3SY7 A;  2KXP B;  3AA0 A;  4FZL A;  2LHF A;  4C4V A;  5G3A A;  1T16 A;  1MPF A;  2WJR A;  3DA3 A;  2J4U P;  1ORM A;  4RLB A;  3VE2 A;  3QRA A;  3PGR A;  1HXU A;  4O4U A;  5B5E O;  3PGU A;  6PRN A;  3LK2 A;  4D64 A;  3D7I A;  4QQ1 A;  3HOE A;  5JDP A;  1MM4 A;  1G90 A;  2FGQ X;  3VZT X;  4U9C A;  3AA0 B;  5B66 O;  5H2F O;  5DL7 A;  1OSM A;  5G38 A;  4AZL A;  2PRR A;  4GHB A;  2PFX A;  2Y0K A;  2K4T A;  4K3B A;  4UB6 O;  3SYS A;  4IL6 O;  2K0L A;  2OMF A;  4FRX A;  5EE2 A;  4AYM C;  3A2S X;  3HOL A;  3HW9 A;  4FZN A;  4GF4 A;  5KAI O;  4C00 A;  3A0B O;  4FMS A;  3V8U A;  2M07 A;  2XG6 A;  4N59 A;  3QRC A;  5AFU L;  4KR8 A;  4AKR B;  1GFP A;  1P8C A;  3AA6 A;  2POR A;  5GV0 A;  1ZHZ A;  4JCH A;  1QJP A;  4FT6 A;  4FOZ A;  4RL9 A;  2AF7 A;  4PUX A;  1S5L O;  3LK3 A;  3VZW X;  5PRN A;  3DA4 A;  3K19 A;  3LK4 2;  3GP6 A;  2X9K A;  3NSG A;  2ES9 A;  5TIS O;  4BUM X;  7PRN A;  2JN8 A;  3VZU X;  4GCQ A;  2QTK A;  2XE1 A;  4F4B A;  2O4V A;  1PRN A;  3POR A;  2X27 X;  1QJ8 A; 
#chains in the Genus database with same CATH homology
 1GFQ A;  4RLC A;  4GCP A;  4Z3T A;  4FRT A;  4AKM A;  3SZD A;  5DL5 A;  4AKR A;  2ERV A;  4G75 A;  3VE1 A;  4XNL A;  1THQ A;  5T5F A;  3KVD D;  3G7G A;  4G76 A;  3HWB A;  4FZM A;  3T24 A;  1HXT A;  2OUW A;  3C5O A;  2Y7S A;  3AA1 A;  3PQU A;  1ZHT A;  4FUV A;  1ZHY A;  3PQS A;  3SYB A;  2Y2X A;  2CWQ A;  3WI5 A;  3EMN X;  2ZFG A;  1ME5 A;  1Q9F A;  4AYN A;  4B61 A;  4RJW A;  3UU2 A;  3LVY A;  2N2M A;  2XE3 A;  8PRN A;  2KC0 A;  2XE2 A;  3O0E A;  4G9Q A;  1BH3 A;  2W81 C;  4FES A;  4N58 A;  4KR4 A;  1BXW A;  3VY9 X;  2XE5 A;  3AAA A;  5ADX L;  5ADX K;  4O3Z A;  1GFM A;  1QJ9 A;  2MNH A;  1YS5 A;  4KRA A;  4XNK A;  4AYE C;  2JMM A;  2O4D A;  1H6S 1;  3RBH A;  3POX A;  3PRN A;  3UPG A;  2J1N A;  4O3X B;  1HXX A;  1IZN B;  3SY9 A;  1ZHW A;  2F1T A;  4O3Y A;  2Q0T A;  3WI4 A;  3POU A;  4D65 A;  3AAE A;  1GFN A;  4E1S A;  2GMY A;  4AUI A;  2IJC A;  3AA7 B;  5IYU A;  3T20 A;  2Y0L A;  1MM5 A;  4FSP A;  1ZHX A;  4O3W A;  3LK2 B;  4GCS A;  1VKE A;  5FVN A;  5DIK A;  3AA6 B;  5DIP A;  3VY8 X;  3AAE B;  3T0S A;  4O4X A;  4LSI A;  4LSH A;  2M06 A;  1LW1 A;  2KDY A;  3AAA B;  1IZN A;  3AA7 A;  3VE2 A;  4JFB A;  1Q9G A;  4AYI D;  2ODJ A;  2XTQ A;  4FSO A;  5DL8 A;  4AFK A;  4D5U A;  1BT9 A;  1E54 A;  2QEU A;  5D5D A;  2OYO A;  3BEY A;  3SZV A;  3LK4 1;  2N2L A;  2KZ7 B;  2ZLD A;  3FYX A;  4E1T A;  4RJX A;  2Y0H A;  3AA1 B;  4LSE A;  2W80 C;  1OPF A;  1PHO A;  1KNC A;  5G26 A;  4C69 X;  3TZG A;  3C1L A;  2PRN A;  5AFU K;  1GU9 A;  5DL6 A;  3POQ A;  2XMX A;  2FGR A;  1P4T A;  2YPV A;  3JTY A;  2KZ7 A;  2GE4 A;  4AYD C;  2F1V A;  2YNK A;  4LSF A;  2KXP A;  2LFU A;  2MHL A;  2XTR A;  3V8U A;  4O49 A;  3UAQ A;  1GFO A;  3LK3 B;  3SY7 A;  2KXP B;  3AA0 A;  4FZL A;  2LHF A;  1MPF A;  3DA3 A;  2J4U P;  1ORM A;  4RLB A;  3QRA A;  4O4U A;  1HXU A;  6PRN A;  3LK2 A;  4D64 A;  3D7I A;  4QQ1 A;  3HOE A;  5JDP A;  1MM4 A;  1G90 A;  2FGQ X;  3VZT X;  4U9C A;  3AA0 B;  5DL7 A;  1OSM A;  4AZL A;  2PRR A;  4GHB A;  2PFX A;  2Y0K A;  2K4T A;  3SYS A;  2K0L A;  2OMF A;  4FRX A;  5EE2 A;  4AYM C;  3A2S X;  3HOL A;  3HW9 A;  4FZN A;  4GF4 A;  4FMS A;  2M07 A;  2XG6 A;  4N59 A;  3QRC A;  5AFU L;  4KR8 A;  4AKR B;  1GFP A;  1P8C A;  3AA6 A;  2POR A;  5GV0 A;  1ZHZ A;  4JCH A;  1QJP A;  4FT6 A;  4FOZ A;  4RL9 A;  2AF7 A;  4PUX A;  3LK3 A;  3VZW X;  5PRN A;  3DA4 A;  3K19 A;  3LK4 2;  3GP6 A;  3NSG A;  4BUM X;  2ES9 A;  7PRN A;  2JN8 A;  3VZU X;  4GCQ A;  2QTK A;  2XE1 A;  4F4B A;  2O4V A;  1PRN A;  3POR A;  2X27 X;  1QJ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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