3AAEA

Crystal structure of actin capping protein in complex with carmil fragment
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
270
structure length
270
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords F-actin-capping protein subunit alpha-1
publication title Two distinct mechanisms for the regulation of actin capping protein-competitive or allosteric inhibitions
rcsb
source organism Gallus gallus
total genus 77
structure length 270
sequence length 270
chains with identical sequence C, E, G, I
ec nomenclature
pdb deposition date 2009-11-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aaeA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aaeA02
3AA7A 3AA1A 2KXPB 4AKRB 5ADXK 2KXPA 3LK42 3LK41 4AKRA 3AAAB 3LK3B 3AAAA 1IZNB 3LK3A 3AA6A 3AA6B 5ADXL 1IZNA 3AAEB 5AFUK 3AAEA 5AFUL 2KZ7B 3AA0B 3LK2B 3LK2A 2KZ7A 3AA0A 3AA7B 3AA1B
chains in the Genus database with same CATH superfamily
3UU2A 4AFKA 1T1LA 2WVPA 4FSOA 5GTHO 4B61A 2Y7SA 3HWBA 3LK42 1PHOA 3AAAB 4GCQA 4QQ1A 1GFOA 2XE3A 4Z3TA 1IZNB 5KAFO 4D5UA 3VZWX 4BUMX 4C00A 4AYNA 6PRNA 3AA0A 4G75A 2K0LA 3RBHA 3BRZA 4N75A 2N2LA 1YS5A 4N59A 1VKEA 4RLCA 4LSHA 3SYSA 4RL9A 2Y0LA 2Y0HA 4O3WA 1MM5A 4KRAA 5JDPA 2XG6A 3AA7B 4AYMC 4FRXA 5DL7A 1GU9A 3JCUO 1HXUA 5B66O 1MM4A 3JTYA 1ZHWA 4AKRB 3A0HO 4O49A 4FZNA 3BEYA 4GCSA 3C5OA 2F1VA 3AAEB 4FOZA 4UB6O 4FESA 4G76A 3VY8X 3PQSA 3AA1A 3LVYA 1BXWA 4AZLA 3QRAA 2KXPB 2YNKA 4GF4A 8PRNA 3AAAA 2LFUA 4JCHA 5H2FO 1IZNA 3GP6A 3KZIO 1OPFA 3K19A 3T0SA 2YPVA 4N58A 2XE2A 2GMYA 3KVDD 5TISO 2R4NA 2OYOA 2PRRA 2AXTO 4PR7A 2XE1A 4O3XB 5ADXL 2WJRA 1T16A 4RLBA 4KR4A 4GCPA 1ORMA 4FZMA 2XE5A 1Q9FA 3HOEA 3FYXA 3AA7A 2R4PA 5G39A 4GHBA 1QJ8A 1GFMA 4O4XA 3A2SX 3LK41 4AKRA 3AA6A 5G26A 4G9QA 3AAEA 2W81C 1HXXA 2IWVA 2F1TA 2JN8A 2N2MA 5B5EO 2Q0TA 5EE2A 4K3CA 2AF7A 2FGQX 3BRYA 2KXPA 2WJQA 5T5FA 3DA4A 1ZHZA 3SY7A 4AYEC 2PFXA 2ZFGA 2KZ7B 4RJWA 2W80C 2PRNA 2M06A 4LSEA 4XNLA 3DA3A 3A0BO 2X9KA 5DL5A 5ADXK 1ME5A 2OUWA 4C69X 3TZGA 2LHFA 3AA6B 4FRTA 4PJ0O 4AYID 1OSMA 5DL6A 1GFNA 4PUXA 5KAIO 5IYUA 4FQEA 3POXA 2PORA 4E1TA 2QEUA 2F1CX 1ZHYA 3POUA 4E1SA 1GFQA 2OMFA 2O4DA 4LSIA 1QJPA 2MHLA 3WI5A 2XMXA 2IWWA 3WU2O 2JMMA 2XTQA 1H6S1 4AKMA 4C4VB 5AFUL 2K4TA 4N74A 2KZ7A 1P4TA 3HOLA 1ZHTA 4O3ZA 2ODJA 5GTIO 3SZVA 1MPFA 4CTDA 2IJCA 3T20A 5FVNA 4FZLA 3PRNA 2GE4A 4O3YA 4AUIA 3NJTA 3VZUX 3SZDA 5E79O 3VY9X 2R8AA 4FUVA 3WI4A 1LW1A 2O4VA 3PGUA 2XTRA 2J4UP 3PQUA 3DZMA 1P8CA 4FMSA 3VE1A 4O4UA 2Y0KA 3SYBA 3LK3B 5G3AA 4U9CA 4XNKA 3UPGA 3VE2A 2JQYA 1E54A 7PRNA 3LK2A 4JFBA 3VZTX 3POQA 2R88A 2KC0A 2CWQA 2FGRA 5DIPA 5AFUK 4FT6A 1BH3A 2ERVA 5D5DA 4C4VA 2J1NA 2M07A 3T24A 3D7IA 3PF1A 4KR8A 2R89A 3DWNA 4D65A 4UB8O 3BS0A 2X27X 3EMNX 3G7GA 4IL6O 2Y2XA 4F4BA 3V8UA 1Q9GA 3NSGA 2QTKA 3C1LA 5G38A 2R4OA 4AYDC 1G90A 3PORA 3AA0B 3HW9A 3LK2B 1THQA 5DL8A 3QRCA 5GV0A 1BT9A 4RJXA 1PRNA 1S5LO 4FSPA 3LK3A 4K3BA 1ZHXA 2MNHA 4LSFA 5PRNA 3UAQA 5DIKA 3SY9A 3PGRA 3O0EA 1QJ9A 2ES9A 3DWOX 4D64A 1GFPA 1HXTA 1KNCA 2R4LA 2ZLDA 3PGSA 2KDYA 3AA1B
chains in the Genus database with same CATH topology
3UU2A 4PUXA 2XE2A 2GMYA 2KC0A 3KVDD 4AFKA 4FSOA 5IYUA 4B61A 2Y7SA 3HWBA 2OYOA 3POXA 3LK42 2CWQA 2PRRA 1PHOA 3AAAB 4GCQA 2PORA 1GFOA 4QQ1A 4E1TA 2XE1A 2FGRA 1IZNB 2XE3A 4O3XB 4Z3TA 5ADXL 5DIPA 2QEUA 5AFUK 4FT6A 1BH3A 2ERVA 5D5DA 4D5UA 4RLBA 3VZWX 4BUMX 4KR4A 4GCPA 1ORMA 1ZHYA 4FZMA 3POUA 2J1NA 2M07A 3T24A 3D7IA 2XE5A 4AYNA 6PRNA 4E1SA 1Q9FA 3AA0A 3HOEA 2K0LA 3FYXA 4G75A 3AA7A 4KR8A 3RBHA 1GFQA 4GHBA 1QJ8A 1GFMA 4D65A 2OMFA 2O4DA 4LSIA 4O4XA 2X27X 3EMNX 3G7GA 3A2SX 2Y2XA 1QJPA 2MHLA 2N2LA 1YS5A 3LK41 4AKRA 4F4BA 3V8UA 3WI5A 2XMXA 4N59A 2JMMA 3AA6A 1Q9GA 5G26A 1VKEA 4G9QA 2XTQA 4RLCA 1H6S1 3NSGA 4LSHA 3SYSA 2QTKA 3C1LA 4AKMA 3AAEA 2W81C 4RL9A 2Y0LA 2Y0HA 4O3WA 4AYDC 5AFUL 1G90A 1MM5A 1HXXA 3PORA 4KRAA 5JDPA 2K4TA 2XG6A 3AA0B 3HW9A 2KZ7A 1P4TA 2F1TA 3LK2B 2JN8A 3HOLA 3AA7B 2N2MA 2Q0TA 1ZHTA 4FRXA 4AYMC 4O3ZA 1THQA 2ODJA 5DL7A 1GU9A 5EE2A 1HXUA 2AF7A 3SZVA 1MM4A 2FGQX 5DL8A 1MPFA 3JTYA 3QRCA 5GV0A 1ZHWA 4AKRB 4O49A 1BT9A 4FZNA 2IJCA 2KXPA 4RJXA 5T5FA 3DA4A 3T20A 5FVNA 1PRNA 4FZLA 3BEYA 3PRNA 4FSPA 3LK3A 3C5OA 4GCSA 1ZHXA 2GE4A 2MNHA 4O3YA 4AUIA 1ZHZA 4LSFA 2F1VA 3AAEB 3VZUX 5PRNA 3SY7A 5DIKA 3SZDA 3UAQA 2PFXA 3VY9X 4AYEC 4FUVA 4FOZA 3WI4A 2ZFGA 1LW1A 4FESA 2O4VA 3SY9A 2KZ7B 4G76A 3VY8X 2XTRA 2J4UP 3PQUA 1P8CA 3O0EA 4FMSA 3PQSA 4RJWA 2W80C 3VE1A 2PRNA 3AA1A 3LVYA 1BXWA 2M06A 4LSEA 1QJ9A 3DA3A 4XNLA 4AZLA 2ES9A 3QRAA 4D64A 2KXPB 1GFPA 4O4UA 5DL5A 2Y0KA 2YNKA 5ADXK 3SYBA 1ME5A 4GF4A 8PRNA 1HXTA 2OUWA 3LK3B 1KNCA 3TZGA 4C69X 3AAAA 2LHFA 2ZLDA 3AA6B 2LFUA 4FRTA 4JCHA 1IZNA 3GP6A 4U9CA 4XNKA 1OPFA 4AYID 3UPGA 3K19A 3VE2A 3T0SA 1OSMA 1E54A 2KDYA 5DL6A 7PRNA 3LK2A 1GFNA 4JFBA 3VZTX 3POQA 2YPVA 4N58A 3AA1B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AA7 A;  3AA1 A;  2KXP B;  4AKR B;  5ADX K;  2KXP A;  3LK4 2;  3LK4 1;  4AKR A;  3AAA B;  3LK3 B;  3AAA A;  1IZN B;  3LK3 A;  3AA6 A;  3AA6 B;  5ADX L;  1IZN A;  3AAE B;  5AFU K;  3AAE A;  5AFU L;  2KZ7 B;  3AA0 B;  3LK2 B;  3LK2 A;  2KZ7 A;  3AA0 A;  3AA7 B;  3AA1 B; 
#chains in the Genus database with same CATH topology
 3UU2 A;  4AFK A;  1T1L A;  2WVP A;  4FSO A;  5GTH O;  4B61 A;  2Y7S A;  3HWB A;  3LK4 2;  1PHO A;  3AAA B;  4GCQ A;  4QQ1 A;  1GFO A;  2XE3 A;  4Z3T A;  1IZN B;  5KAF O;  4D5U A;  3VZW X;  4BUM X;  4C00 A;  4AYN A;  6PRN A;  3AA0 A;  4G75 A;  2K0L A;  3RBH A;  3BRZ A;  4N75 A;  2N2L A;  1YS5 A;  4N59 A;  1VKE A;  4RLC A;  4LSH A;  3SYS A;  4RL9 A;  2Y0L A;  2Y0H A;  4O3W A;  1MM5 A;  4KRA A;  5JDP A;  2XG6 A;  3AA7 B;  4AYM C;  4FRX A;  5DL7 A;  1GU9 A;  3JCU O;  1HXU A;  5B66 O;  1MM4 A;  3JTY A;  1ZHW A;  4AKR B;  3A0H O;  4O49 A;  4FZN A;  3BEY A;  4GCS A;  3C5O A;  2F1V A;  3AAE B;  4FOZ A;  4UB6 O;  4FES A;  4G76 A;  3VY8 X;  3PQS A;  3AA1 A;  3LVY A;  1BXW A;  4AZL A;  3QRA A;  2KXP B;  2YNK A;  4GF4 A;  8PRN A;  3AAA A;  2LFU A;  4JCH A;  5H2F O;  1IZN A;  3GP6 A;  3KZI O;  1OPF A;  3K19 A;  3T0S A;  2YPV A;  4N58 A;  2XE2 A;  2GMY A;  3KVD D;  5TIS O;  2R4N A;  2OYO A;  2PRR A;  2AXT O;  4PR7 A;  2XE1 A;  4O3X B;  5ADX L;  2WJR A;  1T16 A;  4RLB A;  4KR4 A;  4GCP A;  1ORM A;  4FZM A;  2XE5 A;  1Q9F A;  3HOE A;  3FYX A;  3AA7 A;  2R4P A;  5G39 A;  4GHB A;  1QJ8 A;  1GFM A;  4O4X A;  3A2S X;  3LK4 1;  4AKR A;  3AA6 A;  5G26 A;  4G9Q A;  3AAE A;  2W81 C;  1HXX A;  2IWV A;  2F1T A;  2JN8 A;  2N2M A;  5B5E O;  2Q0T A;  5EE2 A;  4K3C A;  2AF7 A;  2FGQ X;  3BRY A;  2KXP A;  2WJQ A;  5T5F A;  3DA4 A;  1ZHZ A;  3SY7 A;  4AYE C;  2PFX A;  2ZFG A;  2KZ7 B;  4RJW A;  2W80 C;  2PRN A;  2M06 A;  4LSE A;  4XNL A;  3DA3 A;  3A0B O;  2X9K A;  5DL5 A;  5ADX K;  1ME5 A;  2OUW A;  4C69 X;  3TZG A;  2LHF A;  3AA6 B;  4FRT A;  4PJ0 O;  4AYI D;  1OSM A;  5DL6 A;  1GFN A;  4PUX A;  5KAI O;  5IYU A;  4FQE A;  3POX A;  2POR A;  4E1T A;  2QEU A;  2F1C X;  1ZHY A;  3POU A;  4E1S A;  1GFQ A;  2OMF A;  2O4D A;  4LSI A;  1QJP A;  2MHL A;  3WI5 A;  2XMX A;  2IWW A;  3WU2 O;  2JMM A;  2XTQ A;  1H6S 1;  4AKM A;  4C4V B;  5AFU L;  2K4T A;  4N74 A;  2KZ7 A;  1P4T A;  3HOL A;  1ZHT A;  4O3Z A;  2ODJ A;  5GTI O;  3SZV A;  1MPF A;  4CTD A;  2IJC A;  3T20 A;  5FVN A;  4FZL A;  3PRN A;  2GE4 A;  4O3Y A;  4AUI A;  3NJT A;  3VZU X;  3SZD A;  5E79 O;  3VY9 X;  2R8A A;  4FUV A;  3WI4 A;  1LW1 A;  2O4V A;  3PGU A;  2XTR A;  2J4U P;  3PQU A;  3DZM A;  1P8C A;  4FMS A;  3VE1 A;  4O4U A;  2Y0K A;  3SYB A;  3LK3 B;  5G3A A;  4U9C A;  4XNK A;  3UPG A;  3VE2 A;  2JQY A;  1E54 A;  7PRN A;  3LK2 A;  4JFB A;  3VZT X;  3POQ A;  2R88 A;  2KC0 A;  2CWQ A;  2FGR A;  5DIP A;  5AFU K;  4FT6 A;  1BH3 A;  2ERV A;  5D5D A;  4C4V A;  2J1N A;  2M07 A;  3T24 A;  3D7I A;  3PF1 A;  4KR8 A;  2R89 A;  3DWN A;  4D65 A;  4UB8 O;  3BS0 A;  2X27 X;  3EMN X;  3G7G A;  4IL6 O;  2Y2X A;  4F4B A;  3V8U A;  1Q9G A;  3NSG A;  2QTK A;  3C1L A;  5G38 A;  2R4O A;  4AYD C;  1G90 A;  3POR A;  3AA0 B;  3HW9 A;  3LK2 B;  1THQ A;  5DL8 A;  3QRC A;  5GV0 A;  1BT9 A;  4RJX A;  1PRN A;  1S5L O;  4FSP A;  3LK3 A;  4K3B A;  1ZHX A;  2MNH A;  4LSF A;  5PRN A;  3UAQ A;  5DIK A;  3SY9 A;  3PGR A;  3O0E A;  1QJ9 A;  2ES9 A;  3DWO X;  4D64 A;  1GFP A;  1HXT A;  1KNC A;  2R4L A;  2ZLD A;  3PGS A;  2KDY A;  3AA1 B; 
#chains in the Genus database with same CATH homology
 3UU2 A;  4PUX A;  2XE2 A;  2GMY A;  2KC0 A;  3KVD D;  4AFK A;  4FSO A;  5IYU A;  4B61 A;  2Y7S A;  3HWB A;  2OYO A;  3POX A;  3LK4 2;  2CWQ A;  2PRR A;  1PHO A;  3AAA B;  4GCQ A;  2POR A;  1GFO A;  4QQ1 A;  4E1T A;  2XE1 A;  2FGR A;  1IZN B;  2XE3 A;  4O3X B;  4Z3T A;  5ADX L;  5DIP A;  2QEU A;  5AFU K;  4FT6 A;  1BH3 A;  2ERV A;  5D5D A;  4D5U A;  4RLB A;  3VZW X;  4BUM X;  4KR4 A;  4GCP A;  1ORM A;  1ZHY A;  4FZM A;  3POU A;  2J1N A;  2M07 A;  3T24 A;  3D7I A;  2XE5 A;  4AYN A;  6PRN A;  4E1S A;  1Q9F A;  3AA0 A;  3HOE A;  2K0L A;  3FYX A;  4G75 A;  3AA7 A;  4KR8 A;  3RBH A;  1GFQ A;  4GHB A;  1QJ8 A;  1GFM A;  4D65 A;  2OMF A;  2O4D A;  4LSI A;  4O4X A;  2X27 X;  3EMN X;  3G7G A;  3A2S X;  2Y2X A;  1QJP A;  2MHL A;  2N2L A;  1YS5 A;  3LK4 1;  4AKR A;  4F4B A;  3V8U A;  3WI5 A;  2XMX A;  4N59 A;  2JMM A;  3AA6 A;  1Q9G A;  5G26 A;  1VKE A;  4G9Q A;  2XTQ A;  4RLC A;  1H6S 1;  3NSG A;  4LSH A;  3SYS A;  2QTK A;  3C1L A;  4AKM A;  3AAE A;  2W81 C;  4RL9 A;  2Y0L A;  2Y0H A;  4O3W A;  4AYD C;  5AFU L;  1G90 A;  1MM5 A;  1HXX A;  3POR A;  4KRA A;  5JDP A;  2K4T A;  2XG6 A;  3AA0 B;  3HW9 A;  2KZ7 A;  1P4T A;  2F1T A;  3LK2 B;  2JN8 A;  3HOL A;  3AA7 B;  2N2M A;  2Q0T A;  1ZHT A;  4FRX A;  4AYM C;  4O3Z A;  1THQ A;  2ODJ A;  5DL7 A;  1GU9 A;  5EE2 A;  1HXU A;  2AF7 A;  3SZV A;  1MM4 A;  2FGQ X;  5DL8 A;  1MPF A;  3JTY A;  3QRC A;  5GV0 A;  1ZHW A;  4AKR B;  4O49 A;  1BT9 A;  4FZN A;  2IJC A;  2KXP A;  4RJX A;  5T5F A;  3DA4 A;  3T20 A;  5FVN A;  1PRN A;  4FZL A;  3BEY A;  3PRN A;  4FSP A;  3LK3 A;  3C5O A;  4GCS A;  1ZHX A;  2GE4 A;  2MNH A;  4O3Y A;  4AUI A;  1ZHZ A;  4LSF A;  2F1V A;  3AAE B;  3VZU X;  5PRN A;  3SY7 A;  5DIK A;  3SZD A;  3UAQ A;  2PFX A;  3VY9 X;  4AYE C;  4FUV A;  4FOZ A;  3WI4 A;  2ZFG A;  1LW1 A;  4FES A;  2O4V A;  3SY9 A;  2KZ7 B;  4G76 A;  3VY8 X;  2XTR A;  2J4U P;  3PQU A;  1P8C A;  3O0E A;  4FMS A;  3PQS A;  4RJW A;  2W80 C;  3VE1 A;  2PRN A;  3AA1 A;  3LVY A;  1BXW A;  2M06 A;  4LSE A;  1QJ9 A;  3DA3 A;  4XNL A;  4AZL A;  2ES9 A;  3QRA A;  4D64 A;  2KXP B;  1GFP A;  4O4U A;  5DL5 A;  2Y0K A;  2YNK A;  5ADX K;  3SYB A;  1ME5 A;  4GF4 A;  8PRN A;  1HXT A;  2OUW A;  3LK3 B;  1KNC A;  3TZG A;  4C69 X;  3AAA A;  2LHF A;  2ZLD A;  3AA6 B;  2LFU A;  4FRT A;  4JCH A;  1IZN A;  3GP6 A;  4U9C A;  4XNK A;  1OPF A;  4AYI D;  3UPG A;  3K19 A;  3VE2 A;  3T0S A;  1OSM A;  1E54 A;  2KDY A;  5DL6 A;  7PRN A;  3LK2 A;  1GFN A;  4JFB A;  3VZT X;  3POQ A;  2YPV A;  4N58 A;  3AA1 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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