3AAEA

Crystal structure of actin capping protein in complex with carmil fragment
Total Genus 77
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
270
structure length
270
Chain Sequence
b'RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords F-actin-capping protein subunit alpha-1
publication title Two distinct mechanisms for the regulation of actin capping protein-competitive or allosteric inhibitions
rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 77
structure length 270
sequence length 270
chains with identical sequence C, E, G, I
ec nomenclature
pdb deposition date 2009-11-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aaeA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aaeA02
3LK41 2KZ7A 2KZ7B 3AAEA 3LK42 3AAEB 5AFUL 3AA6A 3AA6B 5ADXL 4AKRA 4AKRB 2KXPA 2KXPB 3LK2A 5AFUK 3AA0A 1IZNA 5ADXK 1IZNB 3AA0B 3LK2B 3AAAA 3AAAB 3AA1A 3AA7A 3AA1B 3AA7B 3LK3A 3LK3B
chains in the Genus database with same CATH superfamily
5GTIO 2XTQA 4PR7A 1GFOA 3LVYA 3PGRA 2WJRA 2JMMA 1QJ8A 3LK2B 1ZHTA 2PRNA 3PQUA 2Y0KA 3AA7B 4N74A 3LK3A 4RL9A 3SZVA 2KZ7A 1P8CA 5DL8A 2F1CX 2GMYA 3VZUX 2ZLDA 5H2FO 4AKRA 1H6S1 2KXPA 4GCSA 3LK2A 3AAAA 5GV0A 2F1TA 5EE2A 3V8UA 4GCQA 1ZHZA 3UAQA 3T20A 2O4VA 4KR8A 4FZMA 5DL7A 2OMFA 4XNLA 2JN8A 1GFMA 3POQA 5KAIO 1ORMA 3BRYA 2R8AA 5AFUK 2X27X 3POXA 2IWWA 4IL6O 2M06A 1OPFA 4AYMC 3AA1B 3BRZA 1MM5A 4AKMA 4FT6A 3QRCA 3TZGA 4AYID 2IWVA 2QEUA 1G90A 4D5UA 2R4PA 1ZHXA 3VY9X 3QRAA 4GHBA 5E79O 4D65A 2W81C 4G9QA 3FYXA 5G26A 4XNKA 5IYUA 2R4LA 4E1SA 1Q9FA 2XE2A 4RLBA 3UU2A 5G3AA 3SZDA 4LSIA 3VZTX 4BUMX 4FESA 5FVNA 4FSPA 3AAEB 2OUWA 2N2MA 5TISO 4UB8O 1GFQA 5B66O 8PRNA 3AA0A 1HXXA 2R4OA 2W80C 5DL5A 2Y0LA 1GU9A 1BH3A 3DA3A 1Q9GA 3VY8X 2ZFGA 2Y7SA 2XE5A 1BXWA 4AYDC 3NSGA 5ADXK 4O4XA 1GFPA 5G38A 3WU2O 3AA7A 4F4BA 4B61A 3WI5A 5GTHO 2K0LA 3JCUO 4QQ1A 4AFKA 4G75A 4FSOA 3KZIO 3AA6B 4AUIA 2F1VA 2PRRA 2XE1A 4Z3TA 2GE4A 2YNKA 5DL6A 4D64A 1QJPA 2IJCA 4JCHA 4GF4A 2WVPA 5D5DA 2K4TA 4E1TA 4AYEC 4FZNA 3RBHA 2FGRA 2ODJA 2Y2XA 2XMXA 1T1LA 3T24A 4N75A 1THQA 1IZNB 2WJQA 7PRNA 4LSFA 2FGQX 3AA1A 3A0HO 3PGUA 1LW1A 1GFNA 3PRNA 3D7IA 1KNCA 1P4TA 3LK41 5JDPA 4N59A 2O4DA 2ERVA 2JQYA 3C1LA 1VKEA 3HWBA 3SYSA 3UPGA 3SYBA 4C00A 4KR4A 2LFUA 4RJWA 4PUXA 1YS5A 1PHOA 4KRAA 2ES9A 2X9KA 5AFUL 3PGSA 5DIPA 3A2SX 3BS0A 3WI4A 2MHLA 2OYOA 3A0BO 3O0EA 1QJ9A 4O3WA 3VE2A 5DIKA 4AYNA 3LK3B 4U9CA 2R89A 4JFBA 3DA4A 3GP6A 1MM4A 4G76A 3HOEA 2KZ7B 3AAEA 4RJXA 3POUA 3JTYA 2KDYA 4AKRB 2XE3A 5PRNA 1S5LO 2KXPB 1MPFA 3AAAB 2M07A 4FZLA 4CTDA 3PF1A 4PJ0O 2N2LA 4C4VB 3PORA 4GCPA 2CWQA 3HOLA 3C5OA 4FRXA 3PQSA 2AF7A 1T16A 3HW9A 3DWNA 3VZWX 4FUVA 4FRTA 1BT9A 2LHFA 2MNHA 4FMSA 1ME5A 3T0SA 5B5EO 2XG6A 1OSMA 5G39A 3G7GA 4O49A 3EMNX 4RLCA 3DWOX 1ZHWA 1PRNA 4LSEA 4C4VA 1HXTA 4O4UA 2Y0HA 2QTKA 3AA6A 4N58A 2YPVA 1E54A 4C69X 1HXUA 4O3XB 5T5FA 2XTRA 2PORA 3SY9A 4K3CA 2PFXA 4O3YA 5ADXL 4FQEA 3NJTA 1IZNA 2J1NA 3KVDD 2KC0A 2J4UP 4K3BA 3VE1A 4O3ZA 4FOZA 3LK42 3SY7A 3DZMA 2R4NA 4UB6O 2AXTO 3BEYA 3AA0B 4AZLA 1ZHYA 3K19A 2R88A 5KAFO 4LSHA 6PRNA 2Q0TA
chains in the Genus database with same CATH topology
2K4TA 4E1TA 4D65A 4AYEC 2W81C 2N2LA 4FZNA 3RBHA 3PORA 4GCPA 4G9QA 2FGRA 2XTQA 2CWQA 3HOLA 2ODJA 3C5OA 2Y2XA 4FRXA 3FYXA 3PQSA 2AF7A 1GFOA 3LVYA 2XMXA 5G26A 3HW9A 4E1SA 3VZWX 4FUVA 4XNKA 4FRTA 3T24A 5IYUA 2JMMA 1QJ8A 1BT9A 2LHFA 1THQA 3LK2B 1IZNB 2MNHA 1ZHTA 2PRNA 1Q9FA 1ME5A 2XE2A 4FMSA 2XG6A 4RLBA 3T0SA 4LSFA 7PRNA 1OSMA 3PQUA 3G7GA 4O49A 2FGQX 3AA1A 2Y0KA 3AA7B 1LW1A 3UU2A 1GFNA 3SZDA 3LK3A 3PRNA 3EMNX 4LSIA 4RLCA 3VZTX 3D7IA 1KNCA 1ZHWA 4BUMX 1PRNA 4LSEA 1HXTA 1P4TA 4FESA 4FSPA 5FVNA 4O4UA 4RL9A 2Y0HA 3LK41 3SZVA 5JDPA 2KZ7A 4N59A 2O4DA 1P8CA 5DL8A 3AAEB 2GMYA 3AA6A 2QTKA 3VZUX 4AFKA 2ERVA 2OUWA 2N2MA 2ZLDA 1GFQA 4N58A 8PRNA 4AKRA 1H6S1 2KXPA 4GCSA 3C1LA 3LK2A 3AA0A 2YPVA 1VKEA 3AAAA 1E54A 1HXXA 3HWBA 3SYSA 4C69X 5GV0A 3SYBA 2W80C 1HXUA 2Y0LA 4O3XB 5DL5A 3UPGA 1GU9A 2F1TA 5EE2A 5T5FA 2XTRA 4KR4A 1BH3A 3V8UA 4GCQA 2PORA 1ZHZA 3UAQA 2LFUA 3T20A 4RJWA 2O4VA 4KR8A 4PUXA 4FZMA 1YS5A 3SY9A 5DL7A 1PHOA 2OMFA 3DA3A 4XNLA 1Q9GA 4KRAA 2ES9A 3VY8X 2ZFGA 2PFXA 2JN8A 5AFUL 4O3YA 2Y7SA 1GFMA 3POQA 5DIPA 5ADXL 3A2SX 3WI4A 2XE5A 1ORMA 1BXWA 4AYDC 5AFUK 2X27X 3POXA 2MHLA 3NSGA 2OYOA 1IZNA 5ADXK 4O4XA 2M06A 2J1NA 1OPFA 3O0EA 1QJ9A 4O3WA 1GFPA 4AYMC 3AA7A 3AA1B 3KVDD 2KC0A 4B61A 4F4BA 3VE2A 2J4UP 5DIKA 3WI5A 4AYNA 3LK3B 4U9CA 3VE1A 4JFBA 4O3ZA 2K0LA 1MM5A 3DA4A 3GP6A 4QQ1A 4AKMA 1MM4A 4G75A 4FOZA 3HOEA 4FSOA 2KZ7B 3AAEA 3LK42 4G76A 3SY7A 4RJXA 4FT6A 3QRCA 3AA6B 4AUIA 3POUA 2F1VA 3TZGA 2PRRA 3JTYA 2KDYA 2XE1A 4Z3TA 2GE4A 4AYID 4AKRB 2YNKA 5DL6A 2XE3A 5PRNA 4D64A 2KXPB 2QEUA 1G90A 1MPFA 3BEYA 1QJPA 3AA0B 4AZLA 2IJCA 4JCHA 3AAAB 1ZHYA 3K19A 4D5UA 4LSHA 6PRNA 4GF4A 2M07A 4FZLA 1ZHXA 5D5DA 3VY9X 3QRAA 4GHBA 2Q0TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LK4 1;  2KZ7 A;  2KZ7 B;  3AAE A;  3LK4 2;  3AAE B;  5AFU L;  3AA6 A;  3AA6 B;  5ADX L;  4AKR A;  4AKR B;  2KXP A;  2KXP B;  3LK2 A;  5AFU K;  3AA0 A;  1IZN A;  5ADX K;  1IZN B;  3AA0 B;  3LK2 B;  3AAA A;  3AAA B;  3AA1 A;  3AA7 A;  3AA1 B;  3AA7 B;  3LK3 A;  3LK3 B; 
#chains in the Genus database with same CATH topology
 5GTI O;  2XTQ A;  4PR7 A;  1GFO A;  3LVY A;  3PGR A;  2WJR A;  2JMM A;  1QJ8 A;  3LK2 B;  1ZHT A;  2PRN A;  3PQU A;  2Y0K A;  3AA7 B;  4N74 A;  3LK3 A;  4RL9 A;  3SZV A;  2KZ7 A;  1P8C A;  5DL8 A;  2F1C X;  2GMY A;  3VZU X;  2ZLD A;  5H2F O;  4AKR A;  1H6S 1;  2KXP A;  4GCS A;  3LK2 A;  3AAA A;  5GV0 A;  2F1T A;  5EE2 A;  3V8U A;  4GCQ A;  1ZHZ A;  3UAQ A;  3T20 A;  2O4V A;  4KR8 A;  4FZM A;  5DL7 A;  2OMF A;  4XNL A;  2JN8 A;  1GFM A;  3POQ A;  5KAI O;  1ORM A;  3BRY A;  2R8A A;  5AFU K;  2X27 X;  3POX A;  2IWW A;  4IL6 O;  2M06 A;  1OPF A;  4AYM C;  3AA1 B;  3BRZ A;  1MM5 A;  4AKM A;  4FT6 A;  3QRC A;  3TZG A;  4AYI D;  2IWV A;  2QEU A;  1G90 A;  4D5U A;  2R4P A;  1ZHX A;  3VY9 X;  3QRA A;  4GHB A;  5E79 O;  4D65 A;  2W81 C;  4G9Q A;  3FYX A;  5G26 A;  4XNK A;  5IYU A;  2R4L A;  4E1S A;  1Q9F A;  2XE2 A;  4RLB A;  3UU2 A;  5G3A A;  3SZD A;  4LSI A;  3VZT X;  4BUM X;  4FES A;  5FVN A;  4FSP A;  3AAE B;  2OUW A;  2N2M A;  5TIS O;  4UB8 O;  1GFQ A;  5B66 O;  8PRN A;  3AA0 A;  1HXX A;  2R4O A;  2W80 C;  5DL5 A;  2Y0L A;  1GU9 A;  1BH3 A;  3DA3 A;  1Q9G A;  3VY8 X;  2ZFG A;  2Y7S A;  2XE5 A;  1BXW A;  4AYD C;  3NSG A;  5ADX K;  4O4X A;  1GFP A;  5G38 A;  3WU2 O;  3AA7 A;  4F4B A;  4B61 A;  3WI5 A;  5GTH O;  2K0L A;  3JCU O;  4QQ1 A;  4AFK A;  4G75 A;  4FSO A;  3KZI O;  3AA6 B;  4AUI A;  2F1V A;  2PRR A;  2XE1 A;  4Z3T A;  2GE4 A;  2YNK A;  5DL6 A;  4D64 A;  1QJP A;  2IJC A;  4JCH A;  4GF4 A;  2WVP A;  5D5D A;  2K4T A;  4E1T A;  4AYE C;  4FZN A;  3RBH A;  2FGR A;  2ODJ A;  2Y2X A;  2XMX A;  1T1L A;  3T24 A;  4N75 A;  1THQ A;  1IZN B;  2WJQ A;  7PRN A;  4LSF A;  2FGQ X;  3AA1 A;  3A0H O;  3PGU A;  1LW1 A;  1GFN A;  3PRN A;  3D7I A;  1KNC A;  1P4T A;  3LK4 1;  5JDP A;  4N59 A;  2O4D A;  2ERV A;  2JQY A;  3C1L A;  1VKE A;  3HWB A;  3SYS A;  3UPG A;  3SYB A;  4C00 A;  4KR4 A;  2LFU A;  4RJW A;  4PUX A;  1YS5 A;  1PHO A;  4KRA A;  2ES9 A;  2X9K A;  5AFU L;  3PGS A;  5DIP A;  3A2S X;  3BS0 A;  3WI4 A;  2MHL A;  2OYO A;  3A0B O;  3O0E A;  1QJ9 A;  4O3W A;  3VE2 A;  5DIK A;  4AYN A;  3LK3 B;  4U9C A;  2R89 A;  4JFB A;  3DA4 A;  3GP6 A;  1MM4 A;  4G76 A;  3HOE A;  2KZ7 B;  3AAE A;  4RJX A;  3POU A;  3JTY A;  2KDY A;  4AKR B;  2XE3 A;  5PRN A;  1S5L O;  2KXP B;  1MPF A;  3AAA B;  2M07 A;  4FZL A;  4CTD A;  3PF1 A;  4PJ0 O;  2N2L A;  4C4V B;  3POR A;  4GCP A;  2CWQ A;  3HOL A;  3C5O A;  4FRX A;  3PQS A;  2AF7 A;  1T16 A;  3HW9 A;  3DWN A;  3VZW X;  4FUV A;  4FRT A;  1BT9 A;  2LHF A;  2MNH A;  4FMS A;  1ME5 A;  3T0S A;  5B5E O;  2XG6 A;  1OSM A;  5G39 A;  3G7G A;  4O49 A;  3EMN X;  4RLC A;  3DWO X;  1ZHW A;  1PRN A;  4LSE A;  4C4V A;  1HXT A;  4O4U A;  2Y0H A;  2QTK A;  3AA6 A;  4N58 A;  2YPV A;  1E54 A;  4C69 X;  1HXU A;  4O3X B;  5T5F A;  2XTR A;  2POR A;  3SY9 A;  4K3C A;  2PFX A;  4O3Y A;  5ADX L;  4FQE A;  3NJT A;  1IZN A;  2J1N A;  3KVD D;  2KC0 A;  2J4U P;  4K3B A;  3VE1 A;  4O3Z A;  4FOZ A;  3LK4 2;  3SY7 A;  3DZM A;  2R4N A;  4UB6 O;  2AXT O;  3BEY A;  3AA0 B;  4AZL A;  1ZHY A;  3K19 A;  2R88 A;  5KAF O;  4LSH A;  6PRN A;  2Q0T A; 
#chains in the Genus database with same CATH homology
 2K4T A;  4E1T A;  4D65 A;  4AYE C;  2W81 C;  2N2L A;  4FZN A;  3RBH A;  3POR A;  4GCP A;  4G9Q A;  2FGR A;  2XTQ A;  2CWQ A;  3HOL A;  2ODJ A;  3C5O A;  2Y2X A;  4FRX A;  3FYX A;  3PQS A;  2AF7 A;  1GFO A;  3LVY A;  2XMX A;  5G26 A;  3HW9 A;  4E1S A;  3VZW X;  4FUV A;  4XNK A;  4FRT A;  3T24 A;  5IYU A;  2JMM A;  1QJ8 A;  1BT9 A;  2LHF A;  1THQ A;  3LK2 B;  1IZN B;  2MNH A;  1ZHT A;  2PRN A;  1Q9F A;  1ME5 A;  2XE2 A;  4FMS A;  2XG6 A;  4RLB A;  3T0S A;  4LSF A;  7PRN A;  1OSM A;  3PQU A;  3G7G A;  4O49 A;  2FGQ X;  3AA1 A;  2Y0K A;  3AA7 B;  1LW1 A;  3UU2 A;  1GFN A;  3SZD A;  3LK3 A;  3PRN A;  3EMN X;  4LSI A;  4RLC A;  3VZT X;  3D7I A;  1KNC A;  1ZHW A;  4BUM X;  1PRN A;  4LSE A;  1HXT A;  1P4T A;  4FES A;  4FSP A;  5FVN A;  4O4U A;  4RL9 A;  2Y0H A;  3LK4 1;  3SZV A;  5JDP A;  2KZ7 A;  4N59 A;  2O4D A;  1P8C A;  5DL8 A;  3AAE B;  2GMY A;  3AA6 A;  2QTK A;  3VZU X;  4AFK A;  2ERV A;  2OUW A;  2N2M A;  2ZLD A;  1GFQ A;  4N58 A;  8PRN A;  4AKR A;  1H6S 1;  2KXP A;  4GCS A;  3C1L A;  3LK2 A;  3AA0 A;  2YPV A;  1VKE A;  3AAA A;  1E54 A;  1HXX A;  3HWB A;  3SYS A;  4C69 X;  5GV0 A;  3SYB A;  2W80 C;  1HXU A;  2Y0L A;  4O3X B;  5DL5 A;  3UPG A;  1GU9 A;  2F1T A;  5EE2 A;  5T5F A;  2XTR A;  4KR4 A;  1BH3 A;  3V8U A;  4GCQ A;  2POR A;  1ZHZ A;  3UAQ A;  2LFU A;  3T20 A;  4RJW A;  2O4V A;  4KR8 A;  4PUX A;  4FZM A;  1YS5 A;  3SY9 A;  5DL7 A;  1PHO A;  2OMF A;  3DA3 A;  4XNL A;  1Q9G A;  4KRA A;  2ES9 A;  3VY8 X;  2ZFG A;  2PFX A;  2JN8 A;  5AFU L;  4O3Y A;  2Y7S A;  1GFM A;  3POQ A;  5DIP A;  5ADX L;  3A2S X;  3WI4 A;  2XE5 A;  1ORM A;  1BXW A;  4AYD C;  5AFU K;  2X27 X;  3POX A;  2MHL A;  3NSG A;  2OYO A;  1IZN A;  5ADX K;  4O4X A;  2M06 A;  2J1N A;  1OPF A;  3O0E A;  1QJ9 A;  4O3W A;  1GFP A;  4AYM C;  3AA7 A;  3AA1 B;  3KVD D;  2KC0 A;  4B61 A;  4F4B A;  3VE2 A;  2J4U P;  5DIK A;  3WI5 A;  4AYN A;  3LK3 B;  4U9C A;  3VE1 A;  4JFB A;  4O3Z A;  2K0L A;  1MM5 A;  3DA4 A;  3GP6 A;  4QQ1 A;  4AKM A;  1MM4 A;  4G75 A;  4FOZ A;  3HOE A;  4FSO A;  2KZ7 B;  3AAE A;  3LK4 2;  4G76 A;  3SY7 A;  4RJX A;  4FT6 A;  3QRC A;  3AA6 B;  4AUI A;  3POU A;  2F1V A;  3TZG A;  2PRR A;  3JTY A;  2KDY A;  2XE1 A;  4Z3T A;  2GE4 A;  4AYI D;  4AKR B;  2YNK A;  5DL6 A;  2XE3 A;  5PRN A;  4D64 A;  2KXP B;  2QEU A;  1G90 A;  1MPF A;  3BEY A;  1QJP A;  3AA0 B;  4AZL A;  2IJC A;  4JCH A;  3AAA B;  1ZHY A;  3K19 A;  4D5U A;  4LSH A;  6PRN A;  4GF4 A;  2M07 A;  4FZL A;  1ZHX A;  5D5D A;  3VY9 X;  3QRA A;  4GHB A;  2Q0T A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...