3AAEA

Crystal structure of actin capping protein in complex with carmil fragment
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
270
structure length
270
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords F-actin-capping protein subunit alpha-1
publication title Two distinct mechanisms for the regulation of actin capping protein-competitive or allosteric inhibitions
rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 77
structure length 270
sequence length 270
chains with identical sequence C, E, G, I
ec nomenclature
pdb deposition date 2009-11-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aaeA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aaeA02
3AA0B 3LK2A 3AA7B 3AA6B 5ADXL 2KXPA 3AAAB 4AKRA 3LK3A 3AA0A 3AA1B 1IZNB 3AA7A 3AA6A 3AAAA 2KZ7B 3AAEB 3LK41 3AA1A 1IZNA 5AFUK 2KZ7A 3AAEA 3LK2B 3LK42 5ADXK 2KXPB 4AKRB 3LK3B 5AFUL
chains in the Genus database with same CATH superfamily
2XE2A 4Z3TA 4AFKA 5GTHO 4CTDA 4FMSA 3V8UA 4E1SA 4AZLA 2Y0LA 2YNKA 4O4UA 1H6S1 1PHOA 4GF4A 2R4LA 1E54A 5DIKA 4C00A 3POQA 3UPGA 3NSGA 1LW1A 6PRNA 3K19A 4O3YA 4RL9A 4AYNA 2N2MA 4BUMX 2W80C 1IZNB 4D5UA 2OYOA 2M06A 5DL8A 2R89A 3LK41 4B61A 1S5LO 3HOLA 3LVYA 3KZIO 2XTQA 5EE2A 5B5EO 3DA4A 3O0EA 3DZMA 5IYUA 2OUWA 4JFBA 1ME5A 3PORA 2QEUA 1HXTA 3BRYA 1P8CA 2F1VA 3JTYA 3HOEA 2XE3A 2W81C 3AA0B 3T0SA 2CWQA 5ADXL 3G7GA 1Q9FA 1BT9A 3A2SX 4AUIA 2R8AA 4LSFA 2GE4A 4O49A 5B66O 3A0BO 8PRNA 2X9KA 4D64A 3LK2B 2QTKA 3QRAA 4FRTA 1ZHTA 2PRNA 5T5FA 2KXPB 2XE1A 2IWVA 4AYDC 2Y7SA 2PORA 2K4TA 4O3ZA 3AA6B 4PJ0O 4FOZA 1T1LA 3PGUA 4AKMA 5KAIO 4GCPA 3C5OA 2M07A 4N58A 2ZLDA 1BXWA 4FT6A 1PRNA 3SZVA 1BH3A 1ZHWA 4N74A 2X27X 3VY9X 1G90A 1KNCA 2ES9A 5E79O 1OPFA 2WJQA 1THQA 1ZHXA 3LK3A 3AA0A 3AA1B 3VZWX 4O3WA 3PGSA 1P4TA 4FZLA 3DWOX 3WI4A 3VZUX 4LSHA 1YS5A 2WJRA 3QRCA 4RJWA 2Y0HA 3DWNA 2O4DA 5D5DA 5G3AA 3GP6A 3LK2A 1QJ9A 2KXPA 4GCSA 4FRXA 3AAAB 3BRZA 3AA6A 1HXUA 2O4VA 2KZ7B 4F4BA 2R88A 1GFMA 2XG6A 2PRRA 2N2LA 2KDYA 2F1CX 4E1TA 5JDPA 3PQUA 4K3CA 4AKRB 3AA7B 4PUXA 4K3BA 2LFUA 5DIPA 5DL5A 2PFXA 3AAEB 3AA1A 3T20A 3BS0A 5AFUK 1HXXA 4O4XA 2F1TA 5PRNA 3T24A 1GU9A 3KVDD 4C4VB 3AAAA 2J1NA 5G38A 1GFNA 4KR4A 2FGRA 1IZNA 4IL6O 3SY9A 4FZMA 2KZ7A 4FSPA 1ZHYA 3LK42 2MHLA 3DA3A 3HWBA 5GV0A 4G76A 2ERVA 4LSIA 3AA7A 3WI5A 3A0HO 1MPFA 4AYEC 3SYBA 5G39A 1ZHZA 2IJCA 3PRNA 3SYSA 3AAEA 3PGRA 3JCUO 3VE1A 2OMFA 1GFOA 3VZTX 3VY8X 2KC0A 1ORMA 4KRAA 2JMMA 3RBHA 1MM5A 4G75A 4C4VA 2XE5A 4UB6O 4AYID 4N75A 4O3XB 3UAQA 3WU2O 2LHFA 4RJXA 2Y0KA 3D7IA 3UU2A 3EMNX 5G26A 5H2FO 5KAFO 4GCQA 1OSMA 5GTIO 2YPVA 4KR8A 4FQEA 4LSEA 4RLCA 2ODJA 4FUVA 2FGQX 2JN8A 2Q0TA 2AXTO 4D65A 5AFUL 2XMXA 2J4UP 3POXA 1QJ8A 4FSOA 4JCHA 5DL7A 4FESA 1GFPA 4PR7A 1QJPA 1T16A 2R4OA 4UB8O 3VE2A 4GHBA 1GFQA 3C1LA 4XNKA 2GMYA 4AYMC 3NJTA 2MNHA 3POUA 2ZFGA 2AF7A 3SZDA 3TZGA 3PQSA 4QQ1A 4FZNA 2XTRA 3PF1A 1VKEA 2IWWA 5TISO 3HW9A 2K0LA 5FVNA 1MM4A 4G9QA 3LK3B 2R4PA 2JQYA 4U9CA 1Q9GA 2R4NA 4AKRA 3SY7A 4RLBA 3FYXA 2WVPA 7PRNA 3BEYA 2Y2XA 5ADXK 4C69X 4N59A 5DL6A 4XNLA
chains in the Genus database with same CATH topology
3HOEA 2XE3A 2XE2A 2W81C 3AA0B 3T0SA 4AFKA 4Z3TA 2CWQA 3AA7B 4PUXA 5ADXL 2LFUA 3G7GA 1Q9FA 5DIPA 1BT9A 3A2SX 4AUIA 4GCQA 1OSMA 2YPVA 4KR8A 4LSFA 5DL5A 4FMSA 2PFXA 2GE4A 4O49A 3AAEB 8PRNA 3AA1A 3T20A 5AFUK 1HXXA 4LSEA 4O4XA 4RLCA 4D64A 2ODJA 4FUVA 2FGQX 3LK2B 2QTKA 2JN8A 3QRAA 3V8UA 4FRTA 1ZHTA 3WI4A 2PRNA 5T5FA 2KXPB 2Q0TA 2XE1A 4AYDC 2Y7SA 4D65A 2F1TA 4E1SA 4AZLA 5AFUL 2PORA 2XMXA 2K4TA 2Y0LA 2YNKA 4O3ZA 4O4UA 1H6S1 1PHOA 3AA6B 4GF4A 2J4UP 3POXA 4FOZA 1QJ8A 4FSOA 5PRNA 3T24A 4AKMA 1E54A 1GU9A 3KVDD 4GCPA 4JCHA 5DL7A 4FESA 1GFPA 3C5OA 2M07A 4N58A 2ZLDA 3AAAA 1BXWA 1QJPA 2J1NA 4FT6A 1PRNA 1GFNA 4GHBA 5DIKA 1GFQA 4KR4A 3VE2A 2FGRA 3C1LA 1IZNA 3SY9A 4FZMA 4XNKA 3SZVA 1BH3A 2KZ7A 3POQA 4FSPA 1ZHYA 2GMYA 2MHLA 3LK42 1ZHWA 3DA3A 3HWBA 3NSGA 5GV0A 1LW1A 3UPGA 4AYMC 2X27X 6PRNA 3K19A 3VY9X 4O3YA 2MNHA 4G76A 1G90A 1KNCA 2ES9A 3POUA 2ERVA 2ZFGA 4RL9A 2AF7A 2N2MA 4AYNA 1OPFA 3SZDA 3TZGA 1THQA 3PQSA 2W80C 1ZHXA 3LK3A 4LSIA 4QQ1A 4FZNA 4BUMX 3AA0A 3AA1B 3VZWX 1IZNB 2XTRA 4D5UA 3AA7A 3WI5A 4O3WA 1P4TA 2OYOA 1MPFA 4AYEC 3SYBA 2M06A 4FZLA 5DL8A 1ZHZA 3LK41 4LSHA 3VZUX 1YS5A 2IJCA 1VKEA 3HOLA 3PRNA 3LVYA 4B61A 2XTQA 3HW9A 3SYSA 2K0LA 5FVNA 5EE2A 3QRCA 4RJWA 3AAEA 2Y0HA 1MM4A 3VE1A 4G9QA 3DA4A 2O4DA 2OMFA 3LK3B 4U9CA 5D5DA 3GP6A 3O0EA 3LK2A 1QJ9A 1GFOA 5IYUA 1Q9GA 3VZTX 2KXPA 4GCSA 4FRXA 3AAAB 3VY8X 2OUWA 4AKRA 2KC0A 1ORMA 4JFBA 3SY7A 1ME5A 3AA6A 1HXUA 3PORA 4KRAA 4RLBA 2JMMA 3RBHA 1MM5A 3FYXA 2O4VA 2KZ7B 4F4BA 2QEUA 4G75A 1GFMA 1HXTA 7PRNA 2XG6A 2XE5A 1P8CA 4AYID 4O3XB 3UAQA 2LHFA 2PRRA 2N2LA 3BEYA 2Y0KA 4RJXA 2KDYA 3D7IA 2Y2XA 2F1VA 5ADXK 4C69X 4E1TA 3PQUA 5JDPA 3UU2A 3JTYA 3EMNX 4AKRB 4N59A 5G26A 5DL6A 4XNLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AA0 B;  3LK2 A;  3AA7 B;  3AA6 B;  5ADX L;  2KXP A;  3AAA B;  4AKR A;  3LK3 A;  3AA0 A;  3AA1 B;  1IZN B;  3AA7 A;  3AA6 A;  3AAA A;  2KZ7 B;  3AAE B;  3LK4 1;  3AA1 A;  1IZN A;  5AFU K;  2KZ7 A;  3AAE A;  3LK2 B;  3LK4 2;  5ADX K;  2KXP B;  4AKR B;  3LK3 B;  5AFU L; 
#chains in the Genus database with same CATH topology
 2XE2 A;  4Z3T A;  4AFK A;  5GTH O;  4CTD A;  4FMS A;  3V8U A;  4E1S A;  4AZL A;  2Y0L A;  2YNK A;  4O4U A;  1H6S 1;  1PHO A;  4GF4 A;  2R4L A;  1E54 A;  5DIK A;  4C00 A;  3POQ A;  3UPG A;  3NSG A;  1LW1 A;  6PRN A;  3K19 A;  4O3Y A;  4RL9 A;  4AYN A;  2N2M A;  4BUM X;  2W80 C;  1IZN B;  4D5U A;  2OYO A;  2M06 A;  5DL8 A;  2R89 A;  3LK4 1;  4B61 A;  1S5L O;  3HOL A;  3LVY A;  3KZI O;  2XTQ A;  5EE2 A;  5B5E O;  3DA4 A;  3O0E A;  3DZM A;  5IYU A;  2OUW A;  4JFB A;  1ME5 A;  3POR A;  2QEU A;  1HXT A;  3BRY A;  1P8C A;  2F1V A;  3JTY A;  3HOE A;  2XE3 A;  2W81 C;  3AA0 B;  3T0S A;  2CWQ A;  5ADX L;  3G7G A;  1Q9F A;  1BT9 A;  3A2S X;  4AUI A;  2R8A A;  4LSF A;  2GE4 A;  4O49 A;  5B66 O;  3A0B O;  8PRN A;  2X9K A;  4D64 A;  3LK2 B;  2QTK A;  3QRA A;  4FRT A;  1ZHT A;  2PRN A;  5T5F A;  2KXP B;  2XE1 A;  2IWV A;  4AYD C;  2Y7S A;  2POR A;  2K4T A;  4O3Z A;  3AA6 B;  4PJ0 O;  4FOZ A;  1T1L A;  3PGU A;  4AKM A;  5KAI O;  4GCP A;  3C5O A;  2M07 A;  4N58 A;  2ZLD A;  1BXW A;  4FT6 A;  1PRN A;  3SZV A;  1BH3 A;  1ZHW A;  4N74 A;  2X27 X;  3VY9 X;  1G90 A;  1KNC A;  2ES9 A;  5E79 O;  1OPF A;  2WJQ A;  1THQ A;  1ZHX A;  3LK3 A;  3AA0 A;  3AA1 B;  3VZW X;  4O3W A;  3PGS A;  1P4T A;  4FZL A;  3DWO X;  3WI4 A;  3VZU X;  4LSH A;  1YS5 A;  2WJR A;  3QRC A;  4RJW A;  2Y0H A;  3DWN A;  2O4D A;  5D5D A;  5G3A A;  3GP6 A;  3LK2 A;  1QJ9 A;  2KXP A;  4GCS A;  4FRX A;  3AAA B;  3BRZ A;  3AA6 A;  1HXU A;  2O4V A;  2KZ7 B;  4F4B A;  2R88 A;  1GFM A;  2XG6 A;  2PRR A;  2N2L A;  2KDY A;  2F1C X;  4E1T A;  5JDP A;  3PQU A;  4K3C A;  4AKR B;  3AA7 B;  4PUX A;  4K3B A;  2LFU A;  5DIP A;  5DL5 A;  2PFX A;  3AAE B;  3AA1 A;  3T20 A;  3BS0 A;  5AFU K;  1HXX A;  4O4X A;  2F1T A;  5PRN A;  3T24 A;  1GU9 A;  3KVD D;  4C4V B;  3AAA A;  2J1N A;  5G38 A;  1GFN A;  4KR4 A;  2FGR A;  1IZN A;  4IL6 O;  3SY9 A;  4FZM A;  2KZ7 A;  4FSP A;  1ZHY A;  3LK4 2;  2MHL A;  3DA3 A;  3HWB A;  5GV0 A;  4G76 A;  2ERV A;  4LSI A;  3AA7 A;  3WI5 A;  3A0H O;  1MPF A;  4AYE C;  3SYB A;  5G39 A;  1ZHZ A;  2IJC A;  3PRN A;  3SYS A;  3AAE A;  3PGR A;  3JCU O;  3VE1 A;  2OMF A;  1GFO A;  3VZT X;  3VY8 X;  2KC0 A;  1ORM A;  4KRA A;  2JMM A;  3RBH A;  1MM5 A;  4G75 A;  4C4V A;  2XE5 A;  4UB6 O;  4AYI D;  4N75 A;  4O3X B;  3UAQ A;  3WU2 O;  2LHF A;  4RJX A;  2Y0K A;  3D7I A;  3UU2 A;  3EMN X;  5G26 A;  5H2F O;  5KAF O;  4GCQ A;  1OSM A;  5GTI O;  2YPV A;  4KR8 A;  4FQE A;  4LSE A;  4RLC A;  2ODJ A;  4FUV A;  2FGQ X;  2JN8 A;  2Q0T A;  2AXT O;  4D65 A;  5AFU L;  2XMX A;  2J4U P;  3POX A;  1QJ8 A;  4FSO A;  4JCH A;  5DL7 A;  4FES A;  1GFP A;  4PR7 A;  1QJP A;  1T16 A;  2R4O A;  4UB8 O;  3VE2 A;  4GHB A;  1GFQ A;  3C1L A;  4XNK A;  2GMY A;  4AYM C;  3NJT A;  2MNH A;  3POU A;  2ZFG A;  2AF7 A;  3SZD A;  3TZG A;  3PQS A;  4QQ1 A;  4FZN A;  2XTR A;  3PF1 A;  1VKE A;  2IWW A;  5TIS O;  3HW9 A;  2K0L A;  5FVN A;  1MM4 A;  4G9Q A;  3LK3 B;  2R4P A;  2JQY A;  4U9C A;  1Q9G A;  2R4N A;  4AKR A;  3SY7 A;  4RLB A;  3FYX A;  2WVP A;  7PRN A;  3BEY A;  2Y2X A;  5ADX K;  4C69 X;  4N59 A;  5DL6 A;  4XNL A; 
#chains in the Genus database with same CATH homology
 3HOE A;  2XE3 A;  2XE2 A;  2W81 C;  3AA0 B;  3T0S A;  4AFK A;  4Z3T A;  2CWQ A;  3AA7 B;  4PUX A;  5ADX L;  2LFU A;  3G7G A;  1Q9F A;  5DIP A;  1BT9 A;  3A2S X;  4AUI A;  4GCQ A;  1OSM A;  2YPV A;  4KR8 A;  4LSF A;  5DL5 A;  4FMS A;  2PFX A;  2GE4 A;  4O49 A;  3AAE B;  8PRN A;  3AA1 A;  3T20 A;  5AFU K;  1HXX A;  4LSE A;  4O4X A;  4RLC A;  4D64 A;  2ODJ A;  4FUV A;  2FGQ X;  3LK2 B;  2QTK A;  2JN8 A;  3QRA A;  3V8U A;  4FRT A;  1ZHT A;  3WI4 A;  2PRN A;  5T5F A;  2KXP B;  2Q0T A;  2XE1 A;  4AYD C;  2Y7S A;  4D65 A;  2F1T A;  4E1S A;  4AZL A;  5AFU L;  2POR A;  2XMX A;  2K4T A;  2Y0L A;  2YNK A;  4O3Z A;  4O4U A;  1H6S 1;  1PHO A;  3AA6 B;  4GF4 A;  2J4U P;  3POX A;  4FOZ A;  1QJ8 A;  4FSO A;  5PRN A;  3T24 A;  4AKM A;  1E54 A;  1GU9 A;  3KVD D;  4GCP A;  4JCH A;  5DL7 A;  4FES A;  1GFP A;  3C5O A;  2M07 A;  4N58 A;  2ZLD A;  3AAA A;  1BXW A;  1QJP A;  2J1N A;  4FT6 A;  1PRN A;  1GFN A;  4GHB A;  5DIK A;  1GFQ A;  4KR4 A;  3VE2 A;  2FGR A;  3C1L A;  1IZN A;  3SY9 A;  4FZM A;  4XNK A;  3SZV A;  1BH3 A;  2KZ7 A;  3POQ A;  4FSP A;  1ZHY A;  2GMY A;  2MHL A;  3LK4 2;  1ZHW A;  3DA3 A;  3HWB A;  3NSG A;  5GV0 A;  1LW1 A;  3UPG A;  4AYM C;  2X27 X;  6PRN A;  3K19 A;  3VY9 X;  4O3Y A;  2MNH A;  4G76 A;  1G90 A;  1KNC A;  2ES9 A;  3POU A;  2ERV A;  2ZFG A;  4RL9 A;  2AF7 A;  2N2M A;  4AYN A;  1OPF A;  3SZD A;  3TZG A;  1THQ A;  3PQS A;  2W80 C;  1ZHX A;  3LK3 A;  4LSI A;  4QQ1 A;  4FZN A;  4BUM X;  3AA0 A;  3AA1 B;  3VZW X;  1IZN B;  2XTR A;  4D5U A;  3AA7 A;  3WI5 A;  4O3W A;  1P4T A;  2OYO A;  1MPF A;  4AYE C;  3SYB A;  2M06 A;  4FZL A;  5DL8 A;  1ZHZ A;  3LK4 1;  4LSH A;  3VZU X;  1YS5 A;  2IJC A;  1VKE A;  3HOL A;  3PRN A;  3LVY A;  4B61 A;  2XTQ A;  3HW9 A;  3SYS A;  2K0L A;  5FVN A;  5EE2 A;  3QRC A;  4RJW A;  3AAE A;  2Y0H A;  1MM4 A;  3VE1 A;  4G9Q A;  3DA4 A;  2O4D A;  2OMF A;  3LK3 B;  4U9C A;  5D5D A;  3GP6 A;  3O0E A;  3LK2 A;  1QJ9 A;  1GFO A;  5IYU A;  1Q9G A;  3VZT X;  2KXP A;  4GCS A;  4FRX A;  3AAA B;  3VY8 X;  2OUW A;  4AKR A;  2KC0 A;  1ORM A;  4JFB A;  3SY7 A;  1ME5 A;  3AA6 A;  1HXU A;  3POR A;  4KRA A;  4RLB A;  2JMM A;  3RBH A;  1MM5 A;  3FYX A;  2O4V A;  2KZ7 B;  4F4B A;  2QEU A;  4G75 A;  1GFM A;  1HXT A;  7PRN A;  2XG6 A;  2XE5 A;  1P8C A;  4AYI D;  4O3X B;  3UAQ A;  2LHF A;  2PRR A;  2N2L A;  3BEY A;  2Y0K A;  4RJX A;  2KDY A;  3D7I A;  2Y2X A;  2F1V A;  5ADX K;  4C69 X;  4E1T A;  3PQU A;  5JDP A;  3UU2 A;  3JTY A;  3EMN X;  4AKR B;  4N59 A;  5G26 A;  5DL6 A;  4XNL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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