3AAEA

Crystal structure of actin capping protein in complex with carmil fragment
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
270
structure length
270
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Two distinct mechanisms for the regulation of actin capping protein-competitive or allosteric inhibitions
rcsb
source organism Gallus gallus
molecule tags Protein binding
molecule keywords F-actin-capping protein subunit alpha-1
total genus 77
structure length 270
sequence length 270
chains with identical sequence C, E, G, I
ec nomenclature
pdb deposition date 2009-11-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aaeA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aaeA02
2KXPB 5AFUK 5ADXK 3AAEA 3AA1A 3LK42 3LK2B 2KXPA 3AA0A 1IZNB 2KZ7B 5AFUL 4AKRB 3AA6B 4AKRA 1IZNA 3AA1B 3LK3A 3AA0B 3AAEB 3LK2A 5ADXL 3LK3B 3AA7A 3AAAB 3AA6A 3AAAA 2KZ7A 3LK41 3AA7B
chains in the Genus database with same CATH superfamily
1G90A 5DIKA 5AFUK 1E54A 5ADXK 1GFPA 1ZHYA 4GCPA 3LK42 4AYMC 4C4VA 4Z3TA 3VZUX 2KXPA 1ORMA 3C1LA 4PUXA 1KNCA 4FZLA 4D5UA 4FUVA 4GCSA 1ZHTA 2LFUA 2O4VA 3PORA 4K3BA 5T5FA 3PGSA 5AFUL 3T20A 2KC0A 3D7IA 5JDPA 4AKRA 1T16A 4PJ0O 3HWBA 1BXWA 2XMXA 4JFBA 2XG6A 1HXUA 3VE1A 2AXTO 2Y0KA 1P8CA 2R8AA 3DZMA 3LK3B 3POXA 4QQ1A 4AKMA 1BT9A 4O4UA 4RJWA 4UB8O 3UAQA 1QJPA 3KZIO 4BUMX 4D64A 3V8UA 5H2FO 4FZNA 2IWVA 2R89A 5B5EO 3AA6A 4B61A 2F1VA 4RLBA 4E1TA 2ERVA 3GP6A 2YPVA 4AUIA 2GMYA 2Y2XA 3AA7B 5D5DA 3NSGA 2R4NA 4FMSA 4GCQA 4LSHA 4FRTA 5E79O 3AA1A 2W80C 3LK2B 3A0HO 3PQUA 4FQEA 4LSEA 2PRRA 4O4XA 5KAFO 2WJQA 4N75A 4G75A 4AYEC 4AZLA 5IYUA 2IJCA 5B66O 3HOEA 2LHFA 3VY8X 3BRYA 5G38A 5GTIO 1H6S1 2XE2A 3G7GA 1QJ9A 3C5OA 3WI5A 1ME5A 2JQYA 1P4TA 3FYXA 5EE2A 3T24A 4C4VB 4KRAA 1GFQA 3AAEB 1S5LO 2Y0HA 4K3CA 2WJRA 4O49A 2FGQX 2MNHA 4E1SA 3AA7A 3EMNX 1YS5A 3PQSA 4IL6O 4C00A 3PRNA 6PRNA 1LW1A 5GV0A 1VKEA 2XTRA 2OYOA 1GFMA 1OPFA 1GU9A 1T1LA 3LK41 2JMMA 2R4PA 3O0EA 4JCHA 5G26A 2N2LA 2F1TA 4FSOA 5PRNA 2PFXA 3UPGA 3VE2A 5FVNA 2J4UP 1HXTA 2XTQA 3AA0A 2N2MA 2R4LA 2CWQA 1GFNA 1IZNB 2KZ7B 4N74A 3PGRA 4O3ZA 4AYDC 4AYID 5DL7A 1HXXA 2F1CX 2PRNA 3QRCA 1PHOA 3VY9X 2OUWA 4O3WA 2O4DA 4G76A 1ZHWA 4KR4A 3SZVA 2XE5A 2ZFGA 2XE3A 1IZNA 3AA1B 3VZTX 1Q9FA 1MM5A 4LSIA 4RJXA 3POQA 2FGRA 5ADXL 3DWNA 2ODJA 3HW9A 4FSPA 3VZWX 3HOLA 4N59A 4AYNA 2R88A 3PGUA 3WU2O 2M06A 4C69X 1THQA 4FZMA 4FT6A 3AAAB 3LVYA 3WI4A 5GTHO 4KR8A 2ZLDA 4O3XB 2KZ7A 3DWOX 2X27X 4PR7A 3A0BO 5TISO 2Y0LA 4N58A 2W81C 3NJTA 3RBHA 3SY7A 2KXPB 2PORA 1QJ8A 3TZGA 3AAEA 3SYBA 3UU2A 5G39A 5G3AA 4FESA 3POUA 4RLCA 4UB6O 1ZHXA 3SYSA 4U9CA 3PF1A 1MPFA 4RL9A 2OMFA 3JCUO 4AKRB 1GFOA 5KAIO 7PRNA 3DA3A 1PRNA 4XNLA 2R4OA 2YNKA 5DL8A 3AA6B 2GE4A 4G9QA 2KDYA 2MHLA 4GHBA 4D65A 3A2SX 2J1NA 3K19A 4F4BA 4XNKA 8PRNA 2IWWA 3LK3A 2XE1A 4GF4A 4AFKA 3AA0B 3BEYA 2Y7SA 3LK2A 2JN8A 2K0LA 5DIPA 1Q9GA 2WVPA 2M07A 2ES9A 3QRAA 3SY9A 3T0SA 1BH3A 1ZHZA 3BS0A 2QEUA 1OSMA 3BRZA 3JTYA 2K4TA 4FOZA 4O3YA 5DL5A 5DL6A 3KVDD 3SZDA 2QTKA 1MM4A 4FRXA 4CTDA 2Q0TA 3DA4A 3AAAA 4LSFA 2AF7A 2X9KA
chains in the Genus database with same CATH topology
1G90A 5DIKA 5AFUK 1E54A 5ADXK 1GFPA 1ZHYA 4GCPA 3LK42 4AYMC 4Z3TA 3VZUX 2KXPA 1ORMA 3C1LA 4PUXA 1KNCA 4FZLA 4D5UA 4FUVA 4GCSA 1ZHTA 2LFUA 2O4VA 3PORA 5AFUL 3T20A 2KC0A 3D7IA 5JDPA 4AKRA 3HWBA 1BXWA 2XMXA 4JFBA 2XG6A 1HXUA 3VE1A 2Y0KA 1P8CA 3LK3B 3POXA 4QQ1A 4AKMA 1BT9A 4O4UA 4RJWA 3UAQA 1QJPA 4BUMX 4D64A 3V8UA 4FZNA 3AA6A 4B61A 2F1VA 4RLBA 4E1TA 2ERVA 3GP6A 2YPVA 4AUIA 2GMYA 2Y2XA 3AA7B 5D5DA 3NSGA 4FMSA 4GCQA 4LSHA 4FRTA 3AA1A 2W80C 3LK2B 3PQUA 4O4XA 4LSEA 4AYEC 2PRRA 4AZLA 5IYUA 4G75A 2IJCA 3HOEA 2LHFA 3VY8X 1H6S1 2XE2A 3G7GA 1QJ9A 3C5OA 3WI5A 1ME5A 1P4TA 3FYXA 5EE2A 3T24A 4KRAA 1GFQA 3AAEB 2Y0HA 4O49A 2FGQX 2MNHA 4E1SA 3AA7A 3EMNX 1YS5A 3PQSA 3PRNA 6PRNA 1LW1A 5GV0A 1VKEA 2XTRA 2OYOA 1GFMA 1OPFA 1GU9A 2JMMA 3LK41 3O0EA 4JCHA 5T5FA 5G26A 2N2LA 2F1TA 4FSOA 5PRNA 2PFXA 3UPGA 3VE2A 5FVNA 2J4UP 1HXTA 2XTQA 3AA0A 2N2MA 2CWQA 1GFNA 1IZNB 2KZ7B 4O3ZA 4AYDC 4AYID 5DL7A 1HXXA 2PRNA 3QRCA 1PHOA 3VY9X 2OUWA 4O3WA 2O4DA 4G76A 1ZHWA 4KR4A 3SZVA 2XE5A 2ZFGA 2XE3A 1IZNA 3AA1B 3VZTX 1Q9FA 1MM5A 4LSIA 4RJXA 3POQA 2FGRA 5ADXL 2ODJA 3HW9A 4FSPA 3VZWX 3HOLA 4N59A 4AYNA 4C69X 2M06A 1THQA 4FZMA 4FT6A 3AAAB 3LVYA 3WI4A 4KR8A 2ZLDA 4O3XB 2KZ7A 2X27X 3SY7A 2Y0LA 4N58A 2W81C 3RBHA 2KXPB 2PORA 1QJ8A 3TZGA 3AAEA 3SYBA 3UU2A 3SYSA 4FESA 3POUA 4RLCA 1ZHXA 4U9CA 4RL9A 1MPFA 2OMFA 4AKRB 1GFOA 7PRNA 3DA3A 1PRNA 4XNLA 2YNKA 5DL8A 3AA6B 2GE4A 4G9QA 2KDYA 2MHLA 4GHBA 4D65A 3A2SX 2J1NA 3K19A 4F4BA 4XNKA 8PRNA 3LK3A 2XE1A 4GF4A 4AFKA 3AA0B 3BEYA 2Y7SA 3LK2A 2JN8A 2K0LA 5DIPA 1Q9GA 3QRAA 2M07A 2ES9A 3SY9A 3T0SA 1BH3A 1ZHZA 2QEUA 1OSMA 3JTYA 4O3YA 2K4TA 4FOZA 5DL5A 5DL6A 3KVDD 3SZDA 2QTKA 1MM4A 4FRXA 2Q0TA 3DA4A 3AAAA 4LSFA 2AF7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KXP B;  5AFU K;  5ADX K;  3AAE A;  3AA1 A;  3LK4 2;  3LK2 B;  2KXP A;  3AA0 A;  1IZN B;  2KZ7 B;  5AFU L;  4AKR B;  3AA6 B;  4AKR A;  1IZN A;  3AA1 B;  3LK3 A;  3AA0 B;  3AAE B;  3LK2 A;  5ADX L;  3LK3 B;  3AA7 A;  3AAA B;  3AA6 A;  3AAA A;  2KZ7 A;  3LK4 1;  3AA7 B; 
#chains in the Genus database with same CATH topology
 1G90 A;  5DIK A;  5AFU K;  1E54 A;  5ADX K;  1GFP A;  1ZHY A;  4GCP A;  3LK4 2;  4AYM C;  4C4V A;  4Z3T A;  3VZU X;  2KXP A;  1ORM A;  3C1L A;  4PUX A;  1KNC A;  4FZL A;  4D5U A;  4FUV A;  4GCS A;  1ZHT A;  2LFU A;  2O4V A;  3POR A;  4K3B A;  5T5F A;  3PGS A;  5AFU L;  3T20 A;  2KC0 A;  3D7I A;  5JDP A;  4AKR A;  1T16 A;  4PJ0 O;  3HWB A;  1BXW A;  2XMX A;  4JFB A;  2XG6 A;  1HXU A;  3VE1 A;  2AXT O;  2Y0K A;  1P8C A;  2R8A A;  3DZM A;  3LK3 B;  3POX A;  4QQ1 A;  4AKM A;  1BT9 A;  4O4U A;  4RJW A;  4UB8 O;  3UAQ A;  1QJP A;  3KZI O;  4BUM X;  4D64 A;  3V8U A;  5H2F O;  4FZN A;  2IWV A;  2R89 A;  5B5E O;  3AA6 A;  4B61 A;  2F1V A;  4RLB A;  4E1T A;  2ERV A;  3GP6 A;  2YPV A;  4AUI A;  2GMY A;  2Y2X A;  3AA7 B;  5D5D A;  3NSG A;  2R4N A;  4FMS A;  4GCQ A;  4LSH A;  4FRT A;  5E79 O;  3AA1 A;  2W80 C;  3LK2 B;  3A0H O;  3PQU A;  4FQE A;  4LSE A;  2PRR A;  4O4X A;  5KAF O;  2WJQ A;  4N75 A;  4G75 A;  4AYE C;  4AZL A;  5IYU A;  2IJC A;  5B66 O;  3HOE A;  2LHF A;  3VY8 X;  3BRY A;  5G38 A;  5GTI O;  1H6S 1;  2XE2 A;  3G7G A;  1QJ9 A;  3C5O A;  3WI5 A;  1ME5 A;  2JQY A;  1P4T A;  3FYX A;  5EE2 A;  3T24 A;  4C4V B;  4KRA A;  1GFQ A;  3AAE B;  1S5L O;  2Y0H A;  4K3C A;  2WJR A;  4O49 A;  2FGQ X;  2MNH A;  4E1S A;  3AA7 A;  3EMN X;  1YS5 A;  3PQS A;  4IL6 O;  4C00 A;  3PRN A;  6PRN A;  1LW1 A;  5GV0 A;  1VKE A;  2XTR A;  2OYO A;  1GFM A;  1OPF A;  1GU9 A;  1T1L A;  3LK4 1;  2JMM A;  2R4P A;  3O0E A;  4JCH A;  5G26 A;  2N2L A;  2F1T A;  4FSO A;  5PRN A;  2PFX A;  3UPG A;  3VE2 A;  5FVN A;  2J4U P;  1HXT A;  2XTQ A;  3AA0 A;  2N2M A;  2R4L A;  2CWQ A;  1GFN A;  1IZN B;  2KZ7 B;  4N74 A;  3PGR A;  4O3Z A;  4AYD C;  4AYI D;  5DL7 A;  1HXX A;  2F1C X;  2PRN A;  3QRC A;  1PHO A;  3VY9 X;  2OUW A;  4O3W A;  2O4D A;  4G76 A;  1ZHW A;  4KR4 A;  3SZV A;  2XE5 A;  2ZFG A;  2XE3 A;  1IZN A;  3AA1 B;  3VZT X;  1Q9F A;  1MM5 A;  4LSI A;  4RJX A;  3POQ A;  2FGR A;  5ADX L;  3DWN A;  2ODJ A;  3HW9 A;  4FSP A;  3VZW X;  3HOL A;  4N59 A;  4AYN A;  2R88 A;  3PGU A;  3WU2 O;  2M06 A;  4C69 X;  1THQ A;  4FZM A;  4FT6 A;  3AAA B;  3LVY A;  3WI4 A;  5GTH O;  4KR8 A;  2ZLD A;  4O3X B;  2KZ7 A;  3DWO X;  2X27 X;  4PR7 A;  3A0B O;  5TIS O;  2Y0L A;  4N58 A;  2W81 C;  3NJT A;  3RBH A;  3SY7 A;  2KXP B;  2POR A;  1QJ8 A;  3TZG A;  3AAE A;  3SYB A;  3UU2 A;  5G39 A;  5G3A A;  4FES A;  3POU A;  4RLC A;  4UB6 O;  1ZHX A;  3SYS A;  4U9C A;  3PF1 A;  1MPF A;  4RL9 A;  2OMF A;  3JCU O;  4AKR B;  1GFO A;  5KAI O;  7PRN A;  3DA3 A;  1PRN A;  4XNL A;  2R4O A;  2YNK A;  5DL8 A;  3AA6 B;  2GE4 A;  4G9Q A;  2KDY A;  2MHL A;  4GHB A;  4D65 A;  3A2S X;  2J1N A;  3K19 A;  4F4B A;  4XNK A;  8PRN A;  2IWW A;  3LK3 A;  2XE1 A;  4GF4 A;  4AFK A;  3AA0 B;  3BEY A;  2Y7S A;  3LK2 A;  2JN8 A;  2K0L A;  5DIP A;  1Q9G A;  2WVP A;  2M07 A;  2ES9 A;  3QRA A;  3SY9 A;  3T0S A;  1BH3 A;  1ZHZ A;  3BS0 A;  2QEU A;  1OSM A;  3BRZ A;  3JTY A;  2K4T A;  4FOZ A;  4O3Y A;  5DL5 A;  5DL6 A;  3KVD D;  3SZD A;  2QTK A;  1MM4 A;  4FRX A;  4CTD A;  2Q0T A;  3DA4 A;  3AAA A;  4LSF A;  2AF7 A;  2X9K A; 
#chains in the Genus database with same CATH homology
 1G90 A;  5DIK A;  5AFU K;  1E54 A;  5ADX K;  1GFP A;  1ZHY A;  4GCP A;  3LK4 2;  4AYM C;  4Z3T A;  3VZU X;  2KXP A;  1ORM A;  3C1L A;  4PUX A;  1KNC A;  4FZL A;  4D5U A;  4FUV A;  4GCS A;  1ZHT A;  2LFU A;  2O4V A;  3POR A;  5AFU L;  3T20 A;  2KC0 A;  3D7I A;  5JDP A;  4AKR A;  3HWB A;  1BXW A;  2XMX A;  4JFB A;  2XG6 A;  1HXU A;  3VE1 A;  2Y0K A;  1P8C A;  3LK3 B;  3POX A;  4QQ1 A;  4AKM A;  1BT9 A;  4O4U A;  4RJW A;  3UAQ A;  1QJP A;  4BUM X;  4D64 A;  3V8U A;  4FZN A;  3AA6 A;  4B61 A;  2F1V A;  4RLB A;  4E1T A;  2ERV A;  3GP6 A;  2YPV A;  4AUI A;  2GMY A;  2Y2X A;  3AA7 B;  5D5D A;  3NSG A;  4FMS A;  4GCQ A;  4LSH A;  4FRT A;  3AA1 A;  2W80 C;  3LK2 B;  3PQU A;  4O4X A;  4LSE A;  4AYE C;  2PRR A;  4AZL A;  5IYU A;  4G75 A;  2IJC A;  3HOE A;  2LHF A;  3VY8 X;  1H6S 1;  2XE2 A;  3G7G A;  1QJ9 A;  3C5O A;  3WI5 A;  1ME5 A;  1P4T A;  3FYX A;  5EE2 A;  3T24 A;  4KRA A;  1GFQ A;  3AAE B;  2Y0H A;  4O49 A;  2FGQ X;  2MNH A;  4E1S A;  3AA7 A;  3EMN X;  1YS5 A;  3PQS A;  3PRN A;  6PRN A;  1LW1 A;  5GV0 A;  1VKE A;  2XTR A;  2OYO A;  1GFM A;  1OPF A;  1GU9 A;  2JMM A;  3LK4 1;  3O0E A;  4JCH A;  5T5F A;  5G26 A;  2N2L A;  2F1T A;  4FSO A;  5PRN A;  2PFX A;  3UPG A;  3VE2 A;  5FVN A;  2J4U P;  1HXT A;  2XTQ A;  3AA0 A;  2N2M A;  2CWQ A;  1GFN A;  1IZN B;  2KZ7 B;  4O3Z A;  4AYD C;  4AYI D;  5DL7 A;  1HXX A;  2PRN A;  3QRC A;  1PHO A;  3VY9 X;  2OUW A;  4O3W A;  2O4D A;  4G76 A;  1ZHW A;  4KR4 A;  3SZV A;  2XE5 A;  2ZFG A;  2XE3 A;  1IZN A;  3AA1 B;  3VZT X;  1Q9F A;  1MM5 A;  4LSI A;  4RJX A;  3POQ A;  2FGR A;  5ADX L;  2ODJ A;  3HW9 A;  4FSP A;  3VZW X;  3HOL A;  4N59 A;  4AYN A;  4C69 X;  2M06 A;  1THQ A;  4FZM A;  4FT6 A;  3AAA B;  3LVY A;  3WI4 A;  4KR8 A;  2ZLD A;  4O3X B;  2KZ7 A;  2X27 X;  3SY7 A;  2Y0L A;  4N58 A;  2W81 C;  3RBH A;  2KXP B;  2POR A;  1QJ8 A;  3TZG A;  3AAE A;  3SYB A;  3UU2 A;  3SYS A;  4FES A;  3POU A;  4RLC A;  1ZHX A;  4U9C A;  4RL9 A;  1MPF A;  2OMF A;  4AKR B;  1GFO A;  7PRN A;  3DA3 A;  1PRN A;  4XNL A;  2YNK A;  5DL8 A;  3AA6 B;  2GE4 A;  4G9Q A;  2KDY A;  2MHL A;  4GHB A;  4D65 A;  3A2S X;  2J1N A;  3K19 A;  4F4B A;  4XNK A;  8PRN A;  3LK3 A;  2XE1 A;  4GF4 A;  4AFK A;  3AA0 B;  3BEY A;  2Y7S A;  3LK2 A;  2JN8 A;  2K0L A;  5DIP A;  1Q9G A;  3QRA A;  2M07 A;  2ES9 A;  3SY9 A;  3T0S A;  1BH3 A;  1ZHZ A;  2QEU A;  1OSM A;  3JTY A;  4O3Y A;  2K4T A;  4FOZ A;  5DL5 A;  5DL6 A;  3KVD D;  3SZD A;  2QTK A;  1MM4 A;  4FRX A;  2Q0T A;  3DA4 A;  3AAA A;  4LSF A;  2AF7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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