3AAEA

Crystal structure of actin capping protein in complex with carmil fragment
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
270
structure length
270
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords F-actin-capping protein subunit alpha-1
publication title Two distinct mechanisms for the regulation of actin capping protein-competitive or allosteric inhibitions
rcsb
source organism Gallus gallus
total genus 77
structure length 270
sequence length 270
chains with identical sequence C, E, G, I
ec nomenclature
pdb deposition date 2009-11-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aaeA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aaeA02
5AFUK 2KZ7B 2KXPA 3AAAA 5AFUL 3LK3A 3AA1A 3AA0B 3LK41 3AA6B 3AA7B 3AAEB 2KZ7A 3LK2B 1IZNB 4AKRB 5ADXK 3AA0A 3AA7A 2KXPB 3AA6A 3AAAB 5ADXL 3LK3B 3LK2A 3AAEA 3LK42 3AA1B 1IZNA 4AKRA
chains in the Genus database with same CATH superfamily
6PRNA 3SY7A 4AZLA 5AFUL 3VZTX 3POUA 7PRNA 2Y0KA 1YS5A 4FMSA 3KZIO 4FUVA 1GFOA 2KZ7A 1Q9FA 2XG6A 2JQYA 5B66O 3AA7A 5G3AA 1GFQA 4K3CA 5GTHO 1ZHXA 2M07A 4AKRA 1VKEA 4N58A 3PQSA 1GFPA 4RL9A 3VE2A 5D5DA 2F1TA 4O49A 4D5UA 3AAEB 4FZLA 2WJQA 1ME5A 1GFNA 3AA6A 3A0BO 1GFMA 1BXWA 3LK42 4AYEC 4E1SA 8PRNA 3JTYA 2PRRA 3TZGA 1ZHYA 4K3BA 2FGRA 4FZMA 3WU2O 5ADXL 3GP6A 2ZLDA 1QJ9A 5G39A 4LSIA 4F4BA 2KZ7B 4B61A 2R88A 2WJRA 4G9QA 1BT9A 2LFUA 5DIPA 4LSHA 2Y2XA 3WI4A 4AKRB 3AA0A 5KAFO 2IWVA 2N2MA 3KVDD 2ES9A 4PJ0O 2OYOA 1T16A 1HXXA 4KR8A 5PRNA 3AA6B 3PGRA 4XNKA 2IWWA 4O4XA 3WI5A 3POQA 3VE1A 1MM5A 2GMYA 4BUMX 2PORA 3T24A 4PR7A 4AYDC 2F1CX 2CWQA 4RJWA 2M06A 3PQUA 3LK2B 2W80C 5ADXK 4C4VA 3VZUX 4FT6A 3AAAB 2GE4A 2KDYA 4GHBA 3AA1B 3UAQA 4GCPA 3SZVA 3D7IA 2YNKA 2X27X 3VZWX 5H2FO 5KAIO 2ERVA 1G90A 5JDPA 3BRZA 1HXTA 4FZNA 2ODJA 2R8AA 2R4OA 2R4PA 4UB8O 1OSMA 2PRNA 3NJTA 4AKMA 2FGQX 4E1TA 2R4NA 3SZDA 1THQA 1Q9GA 4U9CA 3PRNA 4PUXA 1T1LA 2LHFA 5EE2A 3LK41 4IL6O 3JCUO 4AYNA 1S5LO 5B5EO 4AUIA 3V8UA 1PHOA 3HOLA 3BS0A 3EMNX 4AFKA 3SYBA 5AFUK 4O4UA 1E54A 2XTQA 4C4VB 4JFBA 4O3YA 4RLCA 3LK3A 1P8CA 2AF7A 4N59A 3AA7B 3DWNA 3PGUA 1PRNA 5DL8A 5DL6A 2Y0LA 5DL7A 2XMXA 3K19A 2X9KA 2XE5A 4Z3TA 1ZHWA 2JN8A 4JCHA 2ZFGA 3C1LA 2O4DA 5TISO 3A0HO 3PGSA 2F1VA 3HW9A 4KR4A 2K0LA 2XTRA 2MHLA 4O3ZA 4FOZA 1ZHZA 2XE3A 2Q0TA 4N74A 3SYSA 4AYMC 4FESA 2YPVA 4G76A 3SY9A 3HWBA 3POXA 1QJ8A 3LK3B 1IZNA 1GU9A 4GCSA 5GTIO 2KXPA 4XNLA 4G75A 1ZHTA 4LSEA 3AA0B 2J1NA 4LSFA 2Y7SA 2QTKA 3LVYA 2PFXA 2K4TA 1OPFA 4FRXA 3QRCA 3FYXA 4FRTA 3BRYA 5G38A 4FSOA 4RJXA 3UPGA 3T20A 4RLBA 2JMMA 3O0EA 3DZMA 3BEYA 5IYUA 3QRAA 4D64A 3NSGA 4KRAA 4FQEA 4C69X 5DL5A 3T0SA 3PF1A 2KC0A 2Y0HA 2AXTO 3VY9X 1P4TA 2QEUA 2R89A 4GCQA 1IZNB 3VY8X 2KXPB 3PORA 1H6S1 3LK2A 3HOEA 1BH3A 1HXUA 2MNHA 2IJCA 1ORMA 5DIKA 2N2LA 3AAAA 3DWOX 3AA1A 4AYID 4C00A 5T5FA 1LW1A 5FVNA 3DA4A 1QJPA 1KNCA 1MPFA 2OUWA 3AAEA 2W81C 3C5OA 5GV0A 4QQ1A 2O4VA 4UB6O 3G7GA 4N75A 5G26A 3RBHA 3UU2A 4GF4A 2XE2A 4O3XB 4CTDA 2R4LA 4FSPA 3A2SX 3DA3A 2J4UP 2OMFA 2XE1A 5E79O 1MM4A 4O3WA 2WVPA 4D65A
chains in the Genus database with same CATH topology
4FRTA 5AFUK 4O4UA 2OYOA 1E54A 1HXXA 6PRNA 4KR8A 2XTQA 3SY7A 4AZLA 5AFUL 4JFBA 4O3YA 3VZTX 4RLCA 3POUA 5PRNA 4FSOA 7PRNA 3LK3A 2Y0KA 1P8CA 2AF7A 1YS5A 3AA6B 4FMSA 3AA7B 4N59A 4FUVA 4RJXA 3UPGA 1GFOA 1PRNA 5DL8A 2KZ7A 1Q9FA 5DL6A 3T20A 2Y0LA 2XG6A 4RLBA 4XNKA 2JMMA 4O4XA 3AA7A 3WI5A 3O0EA 1GFQA 3BEYA 5IYUA 3POQA 3QRAA 4D64A 3NSGA 5DL7A 1ZHXA 2XMXA 4KRAA 3VE1A 2M07A 3K19A 5DL5A 4C69X 1MM5A 4AKRA 3T0SA 2GMYA 2KC0A 4BUMX 2PORA 2XE5A 3T24A 4Z3TA 1ZHWA 2Y0HA 1VKEA 4N58A 3PQSA 2JN8A 1GFPA 4JCHA 4RL9A 4AYDC 2ZFGA 3VE2A 2CWQA 4RJWA 3VY9X 1P4TA 2M06A 5D5DA 2QEUA 3C1LA 2F1TA 4O49A 2O4DA 4D5UA 3AAEB 3PQUA 4FZLA 3LK2B 4GCQA 1IZNB 2W80C 5ADXK 3VY8X 3VZUX 1ME5A 2KXPB 3PORA 1GFNA 3AA6A 2F1VA 3HW9A 4FT6A 4KR4A 1H6S1 3AAAB 1GFMA 1BXWA 2K0LA 2XTRA 3LK2A 3LK42 2MHLA 1BH3A 1HXUA 2GE4A 2KDYA 2MNHA 3AA1B 2IJCA 3HOEA 4GHBA 4O3ZA 1ORMA 3UAQA 4AYEC 4FOZA 4GCPA 5DIKA 4E1SA 1ZHZA 8PRNA 2N2LA 3AAAA 3D7IA 2XE3A 3SZVA 2Q0TA 2YNKA 2X27X 3JTYA 2PRRA 3VZWX 3SYSA 3AA1A 4AYID 4AYMC 2ERVA 5T5FA 3TZGA 1G90A 4FESA 1ZHYA 1LW1A 2YPVA 5FVNA 5JDPA 1HXTA 4FZNA 2ODJA 4G76A 3SY9A 3DA4A 3HWBA 1OSMA 2FGRA 2PRNA 4FZMA 1QJPA 1KNCA 5ADXL 1MPFA 3POXA 4AKMA 1QJ8A 3GP6A 2FGQX 2ZLDA 3LK3B 4E1TA 1QJ9A 2OUWA 3AAEA 2W81C 3C5OA 5GV0A 4QQ1A 1IZNA 2O4VA 1GU9A 3SZDA 3G7GA 4LSIA 5G26A 3RBHA 4F4BA 1THQA 2KZ7B 1Q9GA 4GCSA 2KXPA 4U9CA 4B61A 4XNLA 3PRNA 4G9QA 3UU2A 4GF4A 4PUXA 1BT9A 2LHFA 1ZHTA 4G75A 2LFUA 4LSEA 5EE2A 3AA0B 5DIPA 2J1NA 3LK41 2XE2A 4O3XB 4D65A 4AYNA 4LSHA 2Y2XA 4LSFA 2Y7SA 2QTKA 4FSPA 3A2SX 3WI4A 3DA3A 4AKRB 2J4UP 2OMFA 3LVYA 2XE1A 4AUIA 3AA0A 3V8UA 2N2MA 2PFXA 1PHOA 2K4TA 3HOLA 1MM4A 4O3WA 3KVDD 2ES9A 1OPFA 3EMNX 4AFKA 4FRXA 3QRCA 3SYBA 3FYXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AFU K;  2KZ7 B;  2KXP A;  3AAA A;  5AFU L;  3LK3 A;  3AA1 A;  3AA0 B;  3LK4 1;  3AA6 B;  3AA7 B;  3AAE B;  2KZ7 A;  3LK2 B;  1IZN B;  4AKR B;  5ADX K;  3AA0 A;  3AA7 A;  2KXP B;  3AA6 A;  3AAA B;  5ADX L;  3LK3 B;  3LK2 A;  3AAE A;  3LK4 2;  3AA1 B;  1IZN A;  4AKR A; 
#chains in the Genus database with same CATH topology
 6PRN A;  3SY7 A;  4AZL A;  5AFU L;  3VZT X;  3POU A;  7PRN A;  2Y0K A;  1YS5 A;  4FMS A;  3KZI O;  4FUV A;  1GFO A;  2KZ7 A;  1Q9F A;  2XG6 A;  2JQY A;  5B66 O;  3AA7 A;  5G3A A;  1GFQ A;  4K3C A;  5GTH O;  1ZHX A;  2M07 A;  4AKR A;  1VKE A;  4N58 A;  3PQS A;  1GFP A;  4RL9 A;  3VE2 A;  5D5D A;  2F1T A;  4O49 A;  4D5U A;  3AAE B;  4FZL A;  2WJQ A;  1ME5 A;  1GFN A;  3AA6 A;  3A0B O;  1GFM A;  1BXW A;  3LK4 2;  4AYE C;  4E1S A;  8PRN A;  3JTY A;  2PRR A;  3TZG A;  1ZHY A;  4K3B A;  2FGR A;  4FZM A;  3WU2 O;  5ADX L;  3GP6 A;  2ZLD A;  1QJ9 A;  5G39 A;  4LSI A;  4F4B A;  2KZ7 B;  4B61 A;  2R88 A;  2WJR A;  4G9Q A;  1BT9 A;  2LFU A;  5DIP A;  4LSH A;  2Y2X A;  3WI4 A;  4AKR B;  3AA0 A;  5KAF O;  2IWV A;  2N2M A;  3KVD D;  2ES9 A;  4PJ0 O;  2OYO A;  1T16 A;  1HXX A;  4KR8 A;  5PRN A;  3AA6 B;  3PGR A;  4XNK A;  2IWW A;  4O4X A;  3WI5 A;  3POQ A;  3VE1 A;  1MM5 A;  2GMY A;  4BUM X;  2POR A;  3T24 A;  4PR7 A;  4AYD C;  2F1C X;  2CWQ A;  4RJW A;  2M06 A;  3PQU A;  3LK2 B;  2W80 C;  5ADX K;  4C4V A;  3VZU X;  4FT6 A;  3AAA B;  2GE4 A;  2KDY A;  4GHB A;  3AA1 B;  3UAQ A;  4GCP A;  3SZV A;  3D7I A;  2YNK A;  2X27 X;  3VZW X;  5H2F O;  5KAI O;  2ERV A;  1G90 A;  5JDP A;  3BRZ A;  1HXT A;  4FZN A;  2ODJ A;  2R8A A;  2R4O A;  2R4P A;  4UB8 O;  1OSM A;  2PRN A;  3NJT A;  4AKM A;  2FGQ X;  4E1T A;  2R4N A;  3SZD A;  1THQ A;  1Q9G A;  4U9C A;  3PRN A;  4PUX A;  1T1L A;  2LHF A;  5EE2 A;  3LK4 1;  4IL6 O;  3JCU O;  4AYN A;  1S5L O;  5B5E O;  4AUI A;  3V8U A;  1PHO A;  3HOL A;  3BS0 A;  3EMN X;  4AFK A;  3SYB A;  5AFU K;  4O4U A;  1E54 A;  2XTQ A;  4C4V B;  4JFB A;  4O3Y A;  4RLC A;  3LK3 A;  1P8C A;  2AF7 A;  4N59 A;  3AA7 B;  3DWN A;  3PGU A;  1PRN A;  5DL8 A;  5DL6 A;  2Y0L A;  5DL7 A;  2XMX A;  3K19 A;  2X9K A;  2XE5 A;  4Z3T A;  1ZHW A;  2JN8 A;  4JCH A;  2ZFG A;  3C1L A;  2O4D A;  5TIS O;  3A0H O;  3PGS A;  2F1V A;  3HW9 A;  4KR4 A;  2K0L A;  2XTR A;  2MHL A;  4O3Z A;  4FOZ A;  1ZHZ A;  2XE3 A;  2Q0T A;  4N74 A;  3SYS A;  4AYM C;  4FES A;  2YPV A;  4G76 A;  3SY9 A;  3HWB A;  3POX A;  1QJ8 A;  3LK3 B;  1IZN A;  1GU9 A;  4GCS A;  5GTI O;  2KXP A;  4XNL A;  4G75 A;  1ZHT A;  4LSE A;  3AA0 B;  2J1N A;  4LSF A;  2Y7S A;  2QTK A;  3LVY A;  2PFX A;  2K4T A;  1OPF A;  4FRX A;  3QRC A;  3FYX A;  4FRT A;  3BRY A;  5G38 A;  4FSO A;  4RJX A;  3UPG A;  3T20 A;  4RLB A;  2JMM A;  3O0E A;  3DZM A;  3BEY A;  5IYU A;  3QRA A;  4D64 A;  3NSG A;  4KRA A;  4FQE A;  4C69 X;  5DL5 A;  3T0S A;  3PF1 A;  2KC0 A;  2Y0H A;  2AXT O;  3VY9 X;  1P4T A;  2QEU A;  2R89 A;  4GCQ A;  1IZN B;  3VY8 X;  2KXP B;  3POR A;  1H6S 1;  3LK2 A;  3HOE A;  1BH3 A;  1HXU A;  2MNH A;  2IJC A;  1ORM A;  5DIK A;  2N2L A;  3AAA A;  3DWO X;  3AA1 A;  4AYI D;  4C00 A;  5T5F A;  1LW1 A;  5FVN A;  3DA4 A;  1QJP A;  1KNC A;  1MPF A;  2OUW A;  3AAE A;  2W81 C;  3C5O A;  5GV0 A;  4QQ1 A;  2O4V A;  4UB6 O;  3G7G A;  4N75 A;  5G26 A;  3RBH A;  3UU2 A;  4GF4 A;  2XE2 A;  4O3X B;  4CTD A;  2R4L A;  4FSP A;  3A2S X;  3DA3 A;  2J4U P;  2OMF A;  2XE1 A;  5E79 O;  1MM4 A;  4O3W A;  2WVP A;  4D65 A; 
#chains in the Genus database with same CATH homology
 4FRT A;  5AFU K;  4O4U A;  2OYO A;  1E54 A;  1HXX A;  6PRN A;  4KR8 A;  2XTQ A;  3SY7 A;  4AZL A;  5AFU L;  4JFB A;  4O3Y A;  3VZT X;  4RLC A;  3POU A;  5PRN A;  4FSO A;  7PRN A;  3LK3 A;  2Y0K A;  1P8C A;  2AF7 A;  1YS5 A;  3AA6 B;  4FMS A;  3AA7 B;  4N59 A;  4FUV A;  4RJX A;  3UPG A;  1GFO A;  1PRN A;  5DL8 A;  2KZ7 A;  1Q9F A;  5DL6 A;  3T20 A;  2Y0L A;  2XG6 A;  4RLB A;  4XNK A;  2JMM A;  4O4X A;  3AA7 A;  3WI5 A;  3O0E A;  1GFQ A;  3BEY A;  5IYU A;  3POQ A;  3QRA A;  4D64 A;  3NSG A;  5DL7 A;  1ZHX A;  2XMX A;  4KRA A;  3VE1 A;  2M07 A;  3K19 A;  5DL5 A;  4C69 X;  1MM5 A;  4AKR A;  3T0S A;  2GMY A;  2KC0 A;  4BUM X;  2POR A;  2XE5 A;  3T24 A;  4Z3T A;  1ZHW A;  2Y0H A;  1VKE A;  4N58 A;  3PQS A;  2JN8 A;  1GFP A;  4JCH A;  4RL9 A;  4AYD C;  2ZFG A;  3VE2 A;  2CWQ A;  4RJW A;  3VY9 X;  1P4T A;  2M06 A;  5D5D A;  2QEU A;  3C1L A;  2F1T A;  4O49 A;  2O4D A;  4D5U A;  3AAE B;  3PQU A;  4FZL A;  3LK2 B;  4GCQ A;  1IZN B;  2W80 C;  5ADX K;  3VY8 X;  3VZU X;  1ME5 A;  2KXP B;  3POR A;  1GFN A;  3AA6 A;  2F1V A;  3HW9 A;  4FT6 A;  4KR4 A;  1H6S 1;  3AAA B;  1GFM A;  1BXW A;  2K0L A;  2XTR A;  3LK2 A;  3LK4 2;  2MHL A;  1BH3 A;  1HXU A;  2GE4 A;  2KDY A;  2MNH A;  3AA1 B;  2IJC A;  3HOE A;  4GHB A;  4O3Z A;  1ORM A;  3UAQ A;  4AYE C;  4FOZ A;  4GCP A;  5DIK A;  4E1S A;  1ZHZ A;  8PRN A;  2N2L A;  3AAA A;  3D7I A;  2XE3 A;  3SZV A;  2Q0T A;  2YNK A;  2X27 X;  3JTY A;  2PRR A;  3VZW X;  3SYS A;  3AA1 A;  4AYI D;  4AYM C;  2ERV A;  5T5F A;  3TZG A;  1G90 A;  4FES A;  1ZHY A;  1LW1 A;  2YPV A;  5FVN A;  5JDP A;  1HXT A;  4FZN A;  2ODJ A;  4G76 A;  3SY9 A;  3DA4 A;  3HWB A;  1OSM A;  2FGR A;  2PRN A;  4FZM A;  1QJP A;  1KNC A;  5ADX L;  1MPF A;  3POX A;  4AKM A;  1QJ8 A;  3GP6 A;  2FGQ X;  2ZLD A;  3LK3 B;  4E1T A;  1QJ9 A;  2OUW A;  3AAE A;  2W81 C;  3C5O A;  5GV0 A;  4QQ1 A;  1IZN A;  2O4V A;  1GU9 A;  3SZD A;  3G7G A;  4LSI A;  5G26 A;  3RBH A;  4F4B A;  1THQ A;  2KZ7 B;  1Q9G A;  4GCS A;  2KXP A;  4U9C A;  4B61 A;  4XNL A;  3PRN A;  4G9Q A;  3UU2 A;  4GF4 A;  4PUX A;  1BT9 A;  2LHF A;  1ZHT A;  4G75 A;  2LFU A;  4LSE A;  5EE2 A;  3AA0 B;  5DIP A;  2J1N A;  3LK4 1;  2XE2 A;  4O3X B;  4D65 A;  4AYN A;  4LSH A;  2Y2X A;  4LSF A;  2Y7S A;  2QTK A;  4FSP A;  3A2S X;  3WI4 A;  3DA3 A;  4AKR B;  2J4U P;  2OMF A;  3LVY A;  2XE1 A;  4AUI A;  3AA0 A;  3V8U A;  2N2M A;  2PFX A;  1PHO A;  2K4T A;  3HOL A;  1MM4 A;  4O3W A;  3KVD D;  2ES9 A;  1OPF A;  3EMN X;  4AFK A;  4FRX A;  3QRC A;  3SYB A;  3FYX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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