5AFUK

Cryo-em structure of dynein tail-dynactin-bicd2n complex
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
275
structure length
275
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYEDQVLITEHGDLGNSRFLDPRNKISFKFDHLRKEASDPQPEEVDGSLKSWRESCDSALRAYVKDHYSNGFCTVYAKNIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVVGVLKIQVHYYEDGNVQLVSHKDVQDSVTVSNEAQTAKEFIKIIEHAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Motor protein
publication title The Structure of the Dynactin Complex and its Interaction with Dynein.
pubmed doi rcsb
molecule keywords DYNEIN TAIL
total genus 65
structure length 275
sequence length 275
ec nomenclature
pdb deposition date 2015-01-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 5afuK01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 5afuK02
2KZ7A 5AFUK 3AA6A 3LK3A 4AKRB 1IZNB 5ADXK 4AKRA 2KXPB 3AAEB 1IZNA 3AA7B 3LK2B 2KXPA 3AAEA 3LK41 3AA1B 3LK42 3LK2A 5AFUL 3AA7A 3AA0B 3AAAB 3AA1A 2KZ7B 3AA6B 5ADXL 3LK3B 3AA0A 3AAAA
chains in the Genus database with same CATH superfamily
4C00A 3VZWX 3DA3A 4RJXA 4FRTA 2F1CX 1H6S1 2M07A 3PQSA 1ZHXA 1ORMA 3PGRA 2QEUA 1VKEA 3AA1A 3HW9A 2YNKA 2ES9A 3RBHA 4RL9A 2WJQA 3VY9X 4AKRB 3TZGA 2K4TA 3PORA 2WVPA 4G76A 1ZHWA 4PJ0O 4FQEA 4C4VA 3LK2A 4GCQA 3C5OA 3SZDA 2R4NA 1T16A 3JCUO 4LSEA 4JFBA 2ODJA 3UU2A 5DL6A 1BXWA 2R4PA 5G3AA 2AF7A 4FRXA 3DWOX 2IWWA 2JMMA 2XE1A 2CWQA 1PRNA 3FYXA 2GE4A 3HOEA 3JTYA 2PRRA 4IL6O 4O3ZA 4AKRA 4PR7A 2FGQX 3LK41 3LK42 2XTRA 2XG6A 3AA0B 3HOLA 1QJPA 4FMSA 4N75A 2PFXA 4O3WA 6PRNA 1THQA 4LSHA 3QRCA 3A2SX 1QJ9A 1T1LA 4O3XB 3T24A 5E79O 4AZLA 4AYNA 3HWBA 3V8UA 2JN8A 3BEYA 4FSOA 4B61A 2PORA 3D7IA 2AXTO 4G75A 3T0SA 1IZNB 4QQ1A 1PHOA 3WU2O 4AYID 5EE2A 3DA4A 4RLBA 3VE1A 4RJWA 4O49A 2N2MA 4BUMX 1QJ8A 5G39A 2R4OA 4AYEC 1Q9FA 2Q0TA 3SY9A 1P8CA 5DL5A 2OMFA 1GFQA 4F4BA 3BRYA 5GTIO 2XE3A 3BRZA 4C69X 4FUVA 4XNLA 3AAEB 1HXUA 4FOZA 2KC0A 1P4TA 3KZIO 5KAFO 5DL7A 5PRNA 5IYUA 2IWVA 2R4LA 3SYSA 1ZHTA 4Z3TA 2FGRA 1IZNA 5B5EO 2OYOA 3WI5A 2KDYA 2X9KA 3KVDD 2GMYA 5AFUL 4G9QA 2OUWA 3T20A 3C1LA 4O4XA 2J4UP 2WJRA 1ZHZA 2F1VA 3DZMA 2R89A 2Y0HA 2KXPB 2LFUA 2MNHA 1KNCA 1HXTA 3AA7B 2ZFGA 3LVYA 1BT9A 3DWNA 3AAEA 4LSIA 2LHFA 2QTKA 3QRAA 2W81C 1ME5A 3POUA 5TISO 2X27X 3VZTX 4FESA 2PRNA 2M06A 2Y2XA 3AA1B 4AYMC 1GFNA 1Q9GA 1GFPA 2R88A 2KZ7B 3AA6B 1ZHYA 3PQUA 4JCHA 8PRNA 2W80C 1OPFA 4E1SA 3UAQA 1MM4A 3BS0A 4C4VB 2R8AA 2MHLA 2KXPA 2O4VA 1E54A 5KAIO 3AAAB 5D5DA 5ADXL 3LK3B 3AA0A 5FVNA 3UPGA 4CTDA 3POQA 4GF4A 3SZVA 2XE5A 2YPVA 4KR4A 5G38A 4FSPA 4GCSA 4GCPA 4AKMA 4UB8O 3PF1A 5GTHO 2JQYA 4AUIA 2XTQA 2KZ7A 5AFUK 3AA6A 2Y7SA 4FZMA 2XMXA 3A0HO 3G7GA 2Y0LA 3SYBA 2J1NA 3POXA 2XE2A 1MPFA 2Y0KA 2ZLDA 1YS5A 3PGSA 5GV0A 1S5LO 3VY8X 2IJCA 4KRAA 5DIPA 1BH3A 3K19A 3AAAA 2K0LA 2ERVA 3LK3A 3A0BO 1GU9A 4N74A 4XNKA 4N58A 2F1TA 3PRNA 4FZLA 5T5FA 4O4UA 3PGUA 3VE2A 3EMNX 4FZNA 4PUXA 3GP6A 4U9CA 4E1TA 1GFMA 1OSMA 4D64A 3NSGA 5DL8A 4GHBA 1MM5A 4KR8A 7PRNA 5B66O 4O3YA 5G26A 4AFKA 5H2FO 4D65A 4K3BA 5DIKA 3VZUX 3WI4A 4LSFA 1GFOA 5ADXK 2O4DA 4D5UA 4FT6A 3LK2B 4UB6O 1G90A 4RLCA 3AA7A 4N59A 3O0EA 1LW1A 3SY7A 1HXXA 3NJTA 2N2LA 4AYDC 5JDPA 4K3CA
chains in the Genus database with same CATH topology
3C1LA 4O4XA 2KZ7A 5AFUK 2J4UP 3AA6A 2Y7SA 4FZMA 3VZWX 2XMXA 2PFXA 4O3WA 1ZHZA 2F1VA 6PRNA 1THQA 3G7GA 4LSHA 3DA3A 4RJXA 3QRCA 2Y0LA 3A2SX 4FRTA 2Y0HA 2KXPB 3SYBA 2J1NA 1QJ9A 1H6S1 1KNCA 1HXTA 2LFUA 2M07A 2MNHA 2XE2A 3AA7B 1MPFA 2Y0KA 2ZFGA 1ZHXA 3LVYA 1BT9A 2ZLDA 1YS5A 3POXA 3T24A 3AAEA 1ORMA 4LSIA 5GV0A 2QEUA 2LHFA 2IJCA 2QTKA 3QRAA 4KRAA 2W81C 3VY8X 1ME5A 5DIPA 3POUA 4AZLA 1BH3A 4AYNA 1VKEA 3HWBA 3AA1A 3V8UA 2JN8A 3HW9A 3BEYA 2X27X 2ES9A 2YNKA 3K19A 3RBHA 4FSOA 3AAAA 2K0LA 4RL9A 4B61A 2PORA 2ERVA 3LK3A 3VZTX 3D7IA 3VY9X 4AKRB 3TZGA 4G75A 2K4TA 1IZNB 3T0SA 3PORA 4QQ1A 4FESA 1PHOA 4AYID 1GU9A 4G76A 2PRNA 5EE2A 3DA4A 4RLBA 4XNKA 4RJWA 3VE1A 1ZHWA 4O49A 4N58A 2M06A 2F1TA 3PRNA 4FZLA 2N2MA 2Y2XA 3AA1B 4O4UA 5T5FA 4BUMX 1QJ8A 3LK2A 3VE2A 4AYMC 3EMNX 4GCQA 1GFNA 3C5OA 4FZNA 4AYEC 1Q9GA 1GFPA 1Q9FA 2KZ7B 4PUXA 3SZDA 3AA6B 1ZHYA 3GP6A 3PQUA 4U9CA 4JCHA 8PRNA 2W80C 2Q0TA 1OPFA 3SY9A 1P8CA 5DL5A 4E1SA 4E1TA 2OMFA 4LSEA 1GFQA 4F4BA 1GFMA 1OSMA 3UAQA 4D64A 3NSGA 1MM4A 2XE3A 4C69X 4JFBA 4FUVA 2ODJA 4XNLA 4GHBA 5DL8A 3AAEB 3UU2A 1MM5A 1HXUA 4KR8A 7PRNA 2MHLA 2KXPA 2O4VA 4FOZA 2KC0A 5DL6A 1E54A 1BXWA 4O3YA 5G26A 1P4TA 4AFKA 5DL7A 3AAAB 5PRNA 2AF7A 4FRXA 4D65A 5D5DA 5ADXL 3LK3B 3AA0A 4O3XB 2JMMA 5DIKA 2XE1A 5FVNA 5IYUA 3UPGA 2CWQA 1PRNA 3VZUX 3FYXA 3WI4A 3POQA 2GE4A 3HOEA 3JTYA 4GF4A 4LSFA 2PRRA 5ADXK 1GFOA 3SYSA 1ZHTA 4Z3TA 3SZVA 2XE5A 4O3ZA 4AKRA 2YPVA 2O4DA 4D5UA 4KR4A 2FGRA 1IZNA 4FSPA 4FT6A 4GCSA 3LK2B 2OYOA 4GCPA 2FGQX 3LK41 1G90A 3WI5A 4AKMA 2KDYA 3LK42 3KVDD 4RLCA 2GMYA 5AFUL 3AA7A 2XG6A 2XTRA 3AA0B 4N59A 3O0EA 3HOLA 1LW1A 3SY7A 4G9QA 1HXXA 2N2LA 4AYDC 5JDPA 2OUWA 1QJPA 3PQSA 4FMSA 4AUIA 2XTQA 3T20A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KZ7 A;  5AFU K;  3AA6 A;  3LK3 A;  4AKR B;  1IZN B;  5ADX K;  4AKR A;  2KXP B;  3AAE B;  1IZN A;  3AA7 B;  3LK2 B;  2KXP A;  3AAE A;  3LK4 1;  3AA1 B;  3LK4 2;  3LK2 A;  5AFU L;  3AA7 A;  3AA0 B;  3AAA B;  3AA1 A;  2KZ7 B;  3AA6 B;  5ADX L;  3LK3 B;  3AA0 A;  3AAA A; 
#chains in the Genus database with same CATH topology
 4C00 A;  3VZW X;  3DA3 A;  4RJX A;  4FRT A;  2F1C X;  1H6S 1;  2M07 A;  3PQS A;  1ZHX A;  1ORM A;  3PGR A;  2QEU A;  1VKE A;  3AA1 A;  3HW9 A;  2YNK A;  2ES9 A;  3RBH A;  4RL9 A;  2WJQ A;  3VY9 X;  4AKR B;  3TZG A;  2K4T A;  3POR A;  2WVP A;  4G76 A;  1ZHW A;  4PJ0 O;  4FQE A;  4C4V A;  3LK2 A;  4GCQ A;  3C5O A;  3SZD A;  2R4N A;  1T16 A;  3JCU O;  4LSE A;  4JFB A;  2ODJ A;  3UU2 A;  5DL6 A;  1BXW A;  2R4P A;  5G3A A;  2AF7 A;  4FRX A;  3DWO X;  2IWW A;  2JMM A;  2XE1 A;  2CWQ A;  1PRN A;  3FYX A;  2GE4 A;  3HOE A;  3JTY A;  2PRR A;  4IL6 O;  4O3Z A;  4AKR A;  4PR7 A;  2FGQ X;  3LK4 1;  3LK4 2;  2XTR A;  2XG6 A;  3AA0 B;  3HOL A;  1QJP A;  4FMS A;  4N75 A;  2PFX A;  4O3W A;  6PRN A;  1THQ A;  4LSH A;  3QRC A;  3A2S X;  1QJ9 A;  1T1L A;  4O3X B;  3T24 A;  5E79 O;  4AZL A;  4AYN A;  3HWB A;  3V8U A;  2JN8 A;  3BEY A;  4FSO A;  4B61 A;  2POR A;  3D7I A;  2AXT O;  4G75 A;  3T0S A;  1IZN B;  4QQ1 A;  1PHO A;  3WU2 O;  4AYI D;  5EE2 A;  3DA4 A;  4RLB A;  3VE1 A;  4RJW A;  4O49 A;  2N2M A;  4BUM X;  1QJ8 A;  5G39 A;  2R4O A;  4AYE C;  1Q9F A;  2Q0T A;  3SY9 A;  1P8C A;  5DL5 A;  2OMF A;  1GFQ A;  4F4B A;  3BRY A;  5GTI O;  2XE3 A;  3BRZ A;  4C69 X;  4FUV A;  4XNL A;  3AAE B;  1HXU A;  4FOZ A;  2KC0 A;  1P4T A;  3KZI O;  5KAF O;  5DL7 A;  5PRN A;  5IYU A;  2IWV A;  2R4L A;  3SYS A;  1ZHT A;  4Z3T A;  2FGR A;  1IZN A;  5B5E O;  2OYO A;  3WI5 A;  2KDY A;  2X9K A;  3KVD D;  2GMY A;  5AFU L;  4G9Q A;  2OUW A;  3T20 A;  3C1L A;  4O4X A;  2J4U P;  2WJR A;  1ZHZ A;  2F1V A;  3DZM A;  2R89 A;  2Y0H A;  2KXP B;  2LFU A;  2MNH A;  1KNC A;  1HXT A;  3AA7 B;  2ZFG A;  3LVY A;  1BT9 A;  3DWN A;  3AAE A;  4LSI A;  2LHF A;  2QTK A;  3QRA A;  2W81 C;  1ME5 A;  3POU A;  5TIS O;  2X27 X;  3VZT X;  4FES A;  2PRN A;  2M06 A;  2Y2X A;  3AA1 B;  4AYM C;  1GFN A;  1Q9G A;  1GFP A;  2R88 A;  2KZ7 B;  3AA6 B;  1ZHY A;  3PQU A;  4JCH A;  8PRN A;  2W80 C;  1OPF A;  4E1S A;  3UAQ A;  1MM4 A;  3BS0 A;  4C4V B;  2R8A A;  2MHL A;  2KXP A;  2O4V A;  1E54 A;  5KAI O;  3AAA B;  5D5D A;  5ADX L;  3LK3 B;  3AA0 A;  5FVN A;  3UPG A;  4CTD A;  3POQ A;  4GF4 A;  3SZV A;  2XE5 A;  2YPV A;  4KR4 A;  5G38 A;  4FSP A;  4GCS A;  4GCP A;  4AKM A;  4UB8 O;  3PF1 A;  5GTH O;  2JQY A;  4AUI A;  2XTQ A;  2KZ7 A;  5AFU K;  3AA6 A;  2Y7S A;  4FZM A;  2XMX A;  3A0H O;  3G7G A;  2Y0L A;  3SYB A;  2J1N A;  3POX A;  2XE2 A;  1MPF A;  2Y0K A;  2ZLD A;  1YS5 A;  3PGS A;  5GV0 A;  1S5L O;  3VY8 X;  2IJC A;  4KRA A;  5DIP A;  1BH3 A;  3K19 A;  3AAA A;  2K0L A;  2ERV A;  3LK3 A;  3A0B O;  1GU9 A;  4N74 A;  4XNK A;  4N58 A;  2F1T A;  3PRN A;  4FZL A;  5T5F A;  4O4U A;  3PGU A;  3VE2 A;  3EMN X;  4FZN A;  4PUX A;  3GP6 A;  4U9C A;  4E1T A;  1GFM A;  1OSM A;  4D64 A;  3NSG A;  5DL8 A;  4GHB A;  1MM5 A;  4KR8 A;  7PRN A;  5B66 O;  4O3Y A;  5G26 A;  4AFK A;  5H2F O;  4D65 A;  4K3B A;  5DIK A;  3VZU X;  3WI4 A;  4LSF A;  1GFO A;  5ADX K;  2O4D A;  4D5U A;  4FT6 A;  3LK2 B;  4UB6 O;  1G90 A;  4RLC A;  3AA7 A;  4N59 A;  3O0E A;  1LW1 A;  3SY7 A;  1HXX A;  3NJT A;  2N2L A;  4AYD C;  5JDP A;  4K3C A; 
#chains in the Genus database with same CATH homology
 3C1L A;  4O4X A;  2KZ7 A;  5AFU K;  2J4U P;  3AA6 A;  2Y7S A;  4FZM A;  3VZW X;  2XMX A;  2PFX A;  4O3W A;  1ZHZ A;  2F1V A;  6PRN A;  1THQ A;  3G7G A;  4LSH A;  3DA3 A;  4RJX A;  3QRC A;  2Y0L A;  3A2S X;  4FRT A;  2Y0H A;  2KXP B;  3SYB A;  2J1N A;  1QJ9 A;  1H6S 1;  1KNC A;  1HXT A;  2LFU A;  2M07 A;  2MNH A;  2XE2 A;  3AA7 B;  1MPF A;  2Y0K A;  2ZFG A;  1ZHX A;  3LVY A;  1BT9 A;  2ZLD A;  1YS5 A;  3POX A;  3T24 A;  3AAE A;  1ORM A;  4LSI A;  5GV0 A;  2QEU A;  2LHF A;  2IJC A;  2QTK A;  3QRA A;  4KRA A;  2W81 C;  3VY8 X;  1ME5 A;  5DIP A;  3POU A;  4AZL A;  1BH3 A;  4AYN A;  1VKE A;  3HWB A;  3AA1 A;  3V8U A;  2JN8 A;  3HW9 A;  3BEY A;  2X27 X;  2ES9 A;  2YNK A;  3K19 A;  3RBH A;  4FSO A;  3AAA A;  2K0L A;  4RL9 A;  4B61 A;  2POR A;  2ERV A;  3LK3 A;  3VZT X;  3D7I A;  3VY9 X;  4AKR B;  3TZG A;  4G75 A;  2K4T A;  1IZN B;  3T0S A;  3POR A;  4QQ1 A;  4FES A;  1PHO A;  4AYI D;  1GU9 A;  4G76 A;  2PRN A;  5EE2 A;  3DA4 A;  4RLB A;  4XNK A;  4RJW A;  3VE1 A;  1ZHW A;  4O49 A;  4N58 A;  2M06 A;  2F1T A;  3PRN A;  4FZL A;  2N2M A;  2Y2X A;  3AA1 B;  4O4U A;  5T5F A;  4BUM X;  1QJ8 A;  3LK2 A;  3VE2 A;  4AYM C;  3EMN X;  4GCQ A;  1GFN A;  3C5O A;  4FZN A;  4AYE C;  1Q9G A;  1GFP A;  1Q9F A;  2KZ7 B;  4PUX A;  3SZD A;  3AA6 B;  1ZHY A;  3GP6 A;  3PQU A;  4U9C A;  4JCH A;  8PRN A;  2W80 C;  2Q0T A;  1OPF A;  3SY9 A;  1P8C A;  5DL5 A;  4E1S A;  4E1T A;  2OMF A;  4LSE A;  1GFQ A;  4F4B A;  1GFM A;  1OSM A;  3UAQ A;  4D64 A;  3NSG A;  1MM4 A;  2XE3 A;  4C69 X;  4JFB A;  4FUV A;  2ODJ A;  4XNL A;  4GHB A;  5DL8 A;  3AAE B;  3UU2 A;  1MM5 A;  1HXU A;  4KR8 A;  7PRN A;  2MHL A;  2KXP A;  2O4V A;  4FOZ A;  2KC0 A;  5DL6 A;  1E54 A;  1BXW A;  4O3Y A;  5G26 A;  1P4T A;  4AFK A;  5DL7 A;  3AAA B;  5PRN A;  2AF7 A;  4FRX A;  4D65 A;  5D5D A;  5ADX L;  3LK3 B;  3AA0 A;  4O3X B;  2JMM A;  5DIK A;  2XE1 A;  5FVN A;  5IYU A;  3UPG A;  2CWQ A;  1PRN A;  3VZU X;  3FYX A;  3WI4 A;  3POQ A;  2GE4 A;  3HOE A;  3JTY A;  4GF4 A;  4LSF A;  2PRR A;  5ADX K;  1GFO A;  3SYS A;  1ZHT A;  4Z3T A;  3SZV A;  2XE5 A;  4O3Z A;  4AKR A;  2YPV A;  2O4D A;  4D5U A;  4KR4 A;  2FGR A;  1IZN A;  4FSP A;  4FT6 A;  4GCS A;  3LK2 B;  2OYO A;  4GCP A;  2FGQ X;  3LK4 1;  1G90 A;  3WI5 A;  4AKM A;  2KDY A;  3LK4 2;  3KVD D;  4RLC A;  2GMY A;  5AFU L;  3AA7 A;  2XG6 A;  2XTR A;  3AA0 B;  4N59 A;  3O0E A;  3HOL A;  1LW1 A;  3SY7 A;  4G9Q A;  1HXX A;  2N2L A;  4AYD C;  5JDP A;  2OUW A;  1QJP A;  3PQS A;  4FMS A;  4AUI A;  2XTQ A;  3T20 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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