5AFUK

Cryo-em structure of dynein tail-dynactin-bicd2n complex
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
275
structure length
275
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYEDQVLITEHGDLGNSRFLDPRNKISFKFDHLRKEASDPQPEEVDGSLKSWRESCDSALRAYVKDHYSNGFCTVYAKNIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVVGVLKIQVHYYEDGNVQLVSHKDVQDSVTVSNEAQTAKEFIKIIEHAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DYNEIN TAIL
publication title The Structure of the Dynactin Complex and its Interaction with Dynein.
pubmed doi rcsb
molecule tags Motor protein
total genus 65
structure length 275
sequence length 275
ec nomenclature
pdb deposition date 2015-01-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 5afuK01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 5afuK02
1IZNA 3AA0A 3LK2A 5ADXK 3LK3B 2KZ7A 3AAAB 5AFUL 3AA7A 3AAEA 3AA1A 4AKRB 2KXPB 3AA6A 3LK42 5AFUK 1IZNB 3AA0B 3LK2B 3LK3A 2KZ7B 3AAAA 3AA7B 3AA1B 3AAEB 4AKRA 3AA6B 2KXPA 5ADXL 3LK41
chains in the Genus database with same CATH superfamily
4FZNA 2R88A 5D5DA 3DA3A 4D65A 3AAEA 3LK42 3AA0B 3K19A 4JFBA 2N2MA 3BS0A 4FMSA 3PGUA 3AA6B 1E54A 2IWVA 3POXA 3AA0A 3LK3B 3JCUO 5GTHO 2IWWA 3QRCA 3AA6A 2MNHA 1BH3A 4AYID 3G7GA 4O4XA 3V8UA 5H2FO 5DL5A 4GCSA 3LK3A 2X9KA 3VE1A 1QJ9A 4FRXA 3FYXA 3DWOX 3SYBA 2IJCA 5KAFO 3VZUX 4BUMX 2YPVA 3AAAB 3GP6A 8PRNA 4GCQA 1GFPA 2R89A 4O3XB 1ZHZA 3EMNX 1ORMA 3SYSA 2CWQA 3AAAA 4FESA 1MM5A 2F1VA 5ADXL 3JTYA 4KR8A 2R4PA 5G39A 2JQYA 3LK41 2O4DA 4N59A 1LW1A 4F4BA 1ZHYA 1G90A 1QJ8A 4GF4A 2PRNA 3VZTX 4PJ0O 2F1TA 2R4OA 3BRZA 2LFUA 2KDYA 2R8AA 1HXUA 4RJXA 3PQSA 2OMFA 3UPGA 5G26A 5DL7A 2AF7A 4LSHA 4FQEA 2MHLA 2Y0HA 4RL9A 6PRNA 2M06A 4CTDA 4RJWA 3A0BO 4E1TA 2J1NA 2PFXA 2OUWA 4AUIA 3KVDD 5DIPA 1HXTA 4FRTA 4AYMC 5TISO 1BXWA 3HW9A 5T5FA 5DIKA 3PORA 1HXXA 2Y0LA 2XE3A 5AFUK 3SZDA 4GCPA 3T24A 2ES9A 4O3WA 2FGQX 3PRNA 4E1SA 2ZFGA 2PRRA 4KRAA 2WJQA 2GMYA 4N75A 3C1LA 4FSOA 3VY9X 3LVYA 1GFNA 4XNKA 2K4TA 1GFMA 2M07A 3DA4A 4RLBA 1OPFA 3SY9A 4N58A 2XE5A 5IYUA 1S5LO 2W80C 1QJPA 4O3YA 4PR7A 1IZNB 1Q9GA 3C5OA 5G38A 3BRYA 4AFKA 3VZWX 4XNLA 1KNCA 1T1LA 3SZVA 4RLCA 3A0HO 2AXTO 1IZNA 3O0EA 5GV0A 4FT6A 1T16A 2QEUA 3UU2A 3PGRA 3VY8X 4D64A 1ZHTA 2N2LA 2LHFA 3NSGA 4FZMA 3KZIO 3QRAA 5ADXK 2ZLDA 5E79O 5B66O 2XTQA 1GFOA 2XE1A 4UB6O 5PRNA 7PRNA 4KR4A 5DL8A 2XMXA 1P4TA 3DZMA 2F1CX 3AA7B 4AKMA 1MM4A 3T20A 3NJTA 1P8CA 3BEYA 4G76A 2JN8A 4JCHA 3AA7A 4K3BA 3WU2O 3HOLA 5EE2A 3DWNA 2KZ7B 4O4UA 3HOEA 1GFQA 3PGSA 3WI5A 4N74A 3POUA 1THQA 2PORA 2YNKA 1OSMA 2KZ7A 5FVNA 4LSIA 4AYDC 4C00A 5KAIO 5G3AA 3T0SA 4AYNA 1H6S1 4O49A 2R4NA 1Q9FA 4AZLA 3LK2B 3AA1B 3RBHA 1YS5A 4G9QA 2Y2XA 2WJRA 3VE2A 1ME5A 3LK2A 3SY7A 3AA1A 4AKRB 1ZHXA 2X27X 3POQA 2KC0A 4QQ1A 4FOZA 4G75A 1VKEA 3PF1A 4AKRA 2FGRA 2QTKA 4AYEC 3WI4A 1ZHWA 5JDPA 2O4VA 3TZGA 4C4VB 2ERVA 4FSPA 4GHBA 4B61A 2W81C 4U9CA 4C4VA 4O3ZA 3PQUA 2J4UP 3D7IA 2JMMA 5B5EO 1PHOA 2GE4A 2Q0TA 4UB8O 3UAQA 4LSEA 2R4LA 2XTRA 2Y7SA 4C69X 1MPFA 2Y0KA 2WVPA 1PRNA 3HWBA 2K0LA 1GU9A 2ODJA 4FZLA 5GTIO 5AFUL 1BT9A 2OYOA 2KXPB 4K3CA 2XE2A 4IL6O 3A2SX 3AAEB 5DL6A 4Z3TA 4FUVA 4LSFA 2KXPA 2XG6A 4D5UA 4PUXA
chains in the Genus database with same CATH topology
1IZNA 2Y0HA 4RL9A 6PRNA 3LK2A 3O0EA 4FZNA 3SY7A 5GV0A 4FT6A 2M06A 5D5DA 3DA3A 4D65A 3AA1A 3AAEA 4RJWA 4AKRB 2QEUA 3LK42 1ZHXA 4E1TA 2X27X 3POQA 2KC0A 4QQ1A 2J1NA 3UU2A 2PFXA 3VY8X 4FOZA 3AA0B 3K19A 4G75A 4JFBA 2N2MA 4D64A 2OUWA 4AUIA 1ZHTA 1VKEA 4FMSA 4AKRA 3AA6B 5DIPA 1HXTA 2FGRA 2N2LA 3KVDD 4FRTA 2LHFA 4AYMC 2QTKA 4AYEC 3NSGA 1E54A 4FZMA 3WI4A 3QRAA 3POXA 3AA0A 1BXWA 5ADXK 2ZLDA 3HW9A 3LK3B 5T5FA 1ZHWA 5DIKA 2XTQA 3PORA 5JDPA 1HXXA 2O4VA 3QRCA 3AA6A 2Y0LA 2XE3A 2MNHA 3TZGA 1GFOA 5AFUK 1BH3A 2ERVA 4FSPA 3SZDA 2XE1A 5PRNA 4AYID 3G7GA 4GCPA 4GHBA 7PRNA 4O4XA 3V8UA 4KR4A 4B61A 5DL5A 5DL8A 2XMXA 3LK3A 4GCSA 1P4TA 3T24A 2W81C 2ES9A 3AA7B 4U9CA 4AKMA 4O3WA 3VE1A 1MM4A 3T20A 2FGQX 1QJ9A 3PRNA 1P8CA 4E1SA 4FRXA 3FYXA 3SYBA 2IJCA 4O3ZA 3BEYA 3VZUX 4G76A 2JN8A 4BUMX 3PQUA 2J4UP 2ZFGA 2YPVA 2PRRA 3AAAB 3D7IA 4JCHA 3AA7A 2JMMA 4KRAA 3GP6A 2GMYA 8PRNA 1PHOA 4GCQA 2GE4A 2Q0TA 3C1LA 1GFPA 4FSOA 3VY9X 3UAQA 3LVYA 3HOLA 4LSEA 4O3XB 5EE2A 1GFNA 1ZHZA 3EMNX 2XTRA 2Y7SA 1ORMA 4XNKA 3SYSA 4C69X 2CWQA 1MPFA 2Y0KA 2KZ7B 1PRNA 3AAAA 4O4UA 3HOEA 3HWBA 1MM5A 4FESA 1GFQA 2K0LA 2K4TA 1GU9A 1GFMA 2F1VA 2M07A 5ADXL 3JTYA 4KR8A 3DA4A 4RLBA 3WI5A 3LK41 3POUA 2ODJA 1THQA 2PORA 2O4DA 1OPFA 3SY9A 4N59A 1LW1A 4F4BA 4FZLA 4N58A 2YNKA 1OSMA 1ZHYA 1G90A 2KZ7A 5FVNA 1QJ8A 2XE5A 5AFUL 5IYUA 4GF4A 2PRNA 1BT9A 4LSIA 4AYDC 3T0SA 2OYOA 3VZTX 2F1TA 2KXPB 2W80C 4AYNA 2LFUA 2KDYA 1H6S1 1QJPA 4O49A 1Q9FA 4O3YA 1IZNB 1Q9GA 3C5OA 4AZLA 3LK2B 2XE2A 1HXUA 4RJXA 4AFKA 3VZWX 3PQSA 2OMFA 4XNLA 3A2SX 3AA1B 3AAEB 5DL6A 3RBHA 4Z3TA 4FUVA 1YS5A 5G26A 4G9QA 4LSFA 1KNCA 2KXPA 5DL7A 3UPGA 2AF7A 3SZVA 2Y2XA 2XG6A 4RLCA 4D5UA 4LSHA 3VE2A 1ME5A 4PUXA 2MHLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IZN A;  3AA0 A;  3LK2 A;  5ADX K;  3LK3 B;  2KZ7 A;  3AAA B;  5AFU L;  3AA7 A;  3AAE A;  3AA1 A;  4AKR B;  2KXP B;  3AA6 A;  3LK4 2;  5AFU K;  1IZN B;  3AA0 B;  3LK2 B;  3LK3 A;  2KZ7 B;  3AAA A;  3AA7 B;  3AA1 B;  3AAE B;  4AKR A;  3AA6 B;  2KXP A;  5ADX L;  3LK4 1; 
#chains in the Genus database with same CATH topology
 4FZN A;  2R88 A;  5D5D A;  3DA3 A;  4D65 A;  3AAE A;  3LK4 2;  3AA0 B;  3K19 A;  4JFB A;  2N2M A;  3BS0 A;  4FMS A;  3PGU A;  3AA6 B;  1E54 A;  2IWV A;  3POX A;  3AA0 A;  3LK3 B;  3JCU O;  5GTH O;  2IWW A;  3QRC A;  3AA6 A;  2MNH A;  1BH3 A;  4AYI D;  3G7G A;  4O4X A;  3V8U A;  5H2F O;  5DL5 A;  4GCS A;  3LK3 A;  2X9K A;  3VE1 A;  1QJ9 A;  4FRX A;  3FYX A;  3DWO X;  3SYB A;  2IJC A;  5KAF O;  3VZU X;  4BUM X;  2YPV A;  3AAA B;  3GP6 A;  8PRN A;  4GCQ A;  1GFP A;  2R89 A;  4O3X B;  1ZHZ A;  3EMN X;  1ORM A;  3SYS A;  2CWQ A;  3AAA A;  4FES A;  1MM5 A;  2F1V A;  5ADX L;  3JTY A;  4KR8 A;  2R4P A;  5G39 A;  2JQY A;  3LK4 1;  2O4D A;  4N59 A;  1LW1 A;  4F4B A;  1ZHY A;  1G90 A;  1QJ8 A;  4GF4 A;  2PRN A;  3VZT X;  4PJ0 O;  2F1T A;  2R4O A;  3BRZ A;  2LFU A;  2KDY A;  2R8A A;  1HXU A;  4RJX A;  3PQS A;  2OMF A;  3UPG A;  5G26 A;  5DL7 A;  2AF7 A;  4LSH A;  4FQE A;  2MHL A;  2Y0H A;  4RL9 A;  6PRN A;  2M06 A;  4CTD A;  4RJW A;  3A0B O;  4E1T A;  2J1N A;  2PFX A;  2OUW A;  4AUI A;  3KVD D;  5DIP A;  1HXT A;  4FRT A;  4AYM C;  5TIS O;  1BXW A;  3HW9 A;  5T5F A;  5DIK A;  3POR A;  1HXX A;  2Y0L A;  2XE3 A;  5AFU K;  3SZD A;  4GCP A;  3T24 A;  2ES9 A;  4O3W A;  2FGQ X;  3PRN A;  4E1S A;  2ZFG A;  2PRR A;  4KRA A;  2WJQ A;  2GMY A;  4N75 A;  3C1L A;  4FSO A;  3VY9 X;  3LVY A;  1GFN A;  4XNK A;  2K4T A;  1GFM A;  2M07 A;  3DA4 A;  4RLB A;  1OPF A;  3SY9 A;  4N58 A;  2XE5 A;  5IYU A;  1S5L O;  2W80 C;  1QJP A;  4O3Y A;  4PR7 A;  1IZN B;  1Q9G A;  3C5O A;  5G38 A;  3BRY A;  4AFK A;  3VZW X;  4XNL A;  1KNC A;  1T1L A;  3SZV A;  4RLC A;  3A0H O;  2AXT O;  1IZN A;  3O0E A;  5GV0 A;  4FT6 A;  1T16 A;  2QEU A;  3UU2 A;  3PGR A;  3VY8 X;  4D64 A;  1ZHT A;  2N2L A;  2LHF A;  3NSG A;  4FZM A;  3KZI O;  3QRA A;  5ADX K;  2ZLD A;  5E79 O;  5B66 O;  2XTQ A;  1GFO A;  2XE1 A;  4UB6 O;  5PRN A;  7PRN A;  4KR4 A;  5DL8 A;  2XMX A;  1P4T A;  3DZM A;  2F1C X;  3AA7 B;  4AKM A;  1MM4 A;  3T20 A;  3NJT A;  1P8C A;  3BEY A;  4G76 A;  2JN8 A;  4JCH A;  3AA7 A;  4K3B A;  3WU2 O;  3HOL A;  5EE2 A;  3DWN A;  2KZ7 B;  4O4U A;  3HOE A;  1GFQ A;  3PGS A;  3WI5 A;  4N74 A;  3POU A;  1THQ A;  2POR A;  2YNK A;  1OSM A;  2KZ7 A;  5FVN A;  4LSI A;  4AYD C;  4C00 A;  5KAI O;  5G3A A;  3T0S A;  4AYN A;  1H6S 1;  4O49 A;  2R4N A;  1Q9F A;  4AZL A;  3LK2 B;  3AA1 B;  3RBH A;  1YS5 A;  4G9Q A;  2Y2X A;  2WJR A;  3VE2 A;  1ME5 A;  3LK2 A;  3SY7 A;  3AA1 A;  4AKR B;  1ZHX A;  2X27 X;  3POQ A;  2KC0 A;  4QQ1 A;  4FOZ A;  4G75 A;  1VKE A;  3PF1 A;  4AKR A;  2FGR A;  2QTK A;  4AYE C;  3WI4 A;  1ZHW A;  5JDP A;  2O4V A;  3TZG A;  4C4V B;  2ERV A;  4FSP A;  4GHB A;  4B61 A;  2W81 C;  4U9C A;  4C4V A;  4O3Z A;  3PQU A;  2J4U P;  3D7I A;  2JMM A;  5B5E O;  1PHO A;  2GE4 A;  2Q0T A;  4UB8 O;  3UAQ A;  4LSE A;  2R4L A;  2XTR A;  2Y7S A;  4C69 X;  1MPF A;  2Y0K A;  2WVP A;  1PRN A;  3HWB A;  2K0L A;  1GU9 A;  2ODJ A;  4FZL A;  5GTI O;  5AFU L;  1BT9 A;  2OYO A;  2KXP B;  4K3C A;  2XE2 A;  4IL6 O;  3A2S X;  3AAE B;  5DL6 A;  4Z3T A;  4FUV A;  4LSF A;  2KXP A;  2XG6 A;  4D5U A;  4PUX A; 
#chains in the Genus database with same CATH homology
 1IZN A;  2Y0H A;  4RL9 A;  6PRN A;  3LK2 A;  3O0E A;  4FZN A;  3SY7 A;  5GV0 A;  4FT6 A;  2M06 A;  5D5D A;  3DA3 A;  4D65 A;  3AA1 A;  3AAE A;  4RJW A;  4AKR B;  2QEU A;  3LK4 2;  1ZHX A;  4E1T A;  2X27 X;  3POQ A;  2KC0 A;  4QQ1 A;  2J1N A;  3UU2 A;  2PFX A;  3VY8 X;  4FOZ A;  3AA0 B;  3K19 A;  4G75 A;  4JFB A;  2N2M A;  4D64 A;  2OUW A;  4AUI A;  1ZHT A;  1VKE A;  4FMS A;  4AKR A;  3AA6 B;  5DIP A;  1HXT A;  2FGR A;  2N2L A;  3KVD D;  4FRT A;  2LHF A;  4AYM C;  2QTK A;  4AYE C;  3NSG A;  1E54 A;  4FZM A;  3WI4 A;  3QRA A;  3POX A;  3AA0 A;  1BXW A;  5ADX K;  2ZLD A;  3HW9 A;  3LK3 B;  5T5F A;  1ZHW A;  5DIK A;  2XTQ A;  3POR A;  5JDP A;  1HXX A;  2O4V A;  3QRC A;  3AA6 A;  2Y0L A;  2XE3 A;  2MNH A;  3TZG A;  1GFO A;  5AFU K;  1BH3 A;  2ERV A;  4FSP A;  3SZD A;  2XE1 A;  5PRN A;  4AYI D;  3G7G A;  4GCP A;  4GHB A;  7PRN A;  4O4X A;  3V8U A;  4KR4 A;  4B61 A;  5DL5 A;  5DL8 A;  2XMX A;  3LK3 A;  4GCS A;  1P4T A;  3T24 A;  2W81 C;  2ES9 A;  3AA7 B;  4U9C A;  4AKM A;  4O3W A;  3VE1 A;  1MM4 A;  3T20 A;  2FGQ X;  1QJ9 A;  3PRN A;  1P8C A;  4E1S A;  4FRX A;  3FYX A;  3SYB A;  2IJC A;  4O3Z A;  3BEY A;  3VZU X;  4G76 A;  2JN8 A;  4BUM X;  3PQU A;  2J4U P;  2ZFG A;  2YPV A;  2PRR A;  3AAA B;  3D7I A;  4JCH A;  3AA7 A;  2JMM A;  4KRA A;  3GP6 A;  2GMY A;  8PRN A;  1PHO A;  4GCQ A;  2GE4 A;  2Q0T A;  3C1L A;  1GFP A;  4FSO A;  3VY9 X;  3UAQ A;  3LVY A;  3HOL A;  4LSE A;  4O3X B;  5EE2 A;  1GFN A;  1ZHZ A;  3EMN X;  2XTR A;  2Y7S A;  1ORM A;  4XNK A;  3SYS A;  4C69 X;  2CWQ A;  1MPF A;  2Y0K A;  2KZ7 B;  1PRN A;  3AAA A;  4O4U A;  3HOE A;  3HWB A;  1MM5 A;  4FES A;  1GFQ A;  2K0L A;  2K4T A;  1GU9 A;  1GFM A;  2F1V A;  2M07 A;  5ADX L;  3JTY A;  4KR8 A;  3DA4 A;  4RLB A;  3WI5 A;  3LK4 1;  3POU A;  2ODJ A;  1THQ A;  2POR A;  2O4D A;  1OPF A;  3SY9 A;  4N59 A;  1LW1 A;  4F4B A;  4FZL A;  4N58 A;  2YNK A;  1OSM A;  1ZHY A;  1G90 A;  2KZ7 A;  5FVN A;  1QJ8 A;  2XE5 A;  5AFU L;  5IYU A;  4GF4 A;  2PRN A;  1BT9 A;  4LSI A;  4AYD C;  3T0S A;  2OYO A;  3VZT X;  2F1T A;  2KXP B;  2W80 C;  4AYN A;  2LFU A;  2KDY A;  1H6S 1;  1QJP A;  4O49 A;  1Q9F A;  4O3Y A;  1IZN B;  1Q9G A;  3C5O A;  4AZL A;  3LK2 B;  2XE2 A;  1HXU A;  4RJX A;  4AFK A;  3VZW X;  3PQS A;  2OMF A;  4XNL A;  3A2S X;  3AA1 B;  3AAE B;  5DL6 A;  3RBH A;  4Z3T A;  4FUV A;  1YS5 A;  5G26 A;  4G9Q A;  4LSF A;  1KNC A;  2KXP A;  5DL7 A;  3UPG A;  2AF7 A;  3SZV A;  2Y2X A;  2XG6 A;  4RLC A;  4D5U A;  4LSH A;  3VE2 A;  1ME5 A;  4PUX A;  2MHL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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