5AFUK

Cryo-em structure of dynein tail-dynactin-bicd2n complex
Total Genus 65
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
275
structure length
275
Chain Sequence
b'RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYEDQVLITEHGDLGNSRFLDPRNKISFKFDHLRKEASDPQPEEVDGSLKSWRESCDSALRAYVKDHYSNGFCTVYAKNIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVVGVLKIQVHYYEDGNVQLVSHKDVQDSVTVSNEAQTAKEFIKIIEHAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords DYNEIN TAIL
publication title The Structure of the Dynactin Complex and its Interaction with Dynein.
pubmed doi rcsb
molecule tags Motor protein
total genus 65
structure length 275
sequence length 275
ec nomenclature
pdb deposition date 2015-01-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 5afuK01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 5afuK02
2KXPA 2KXPB 3AAAA 3AAAB 4AKRB 4AKRA 5AFUK 3LK41 3AAEB 3AAEA 3AA6B 3AA0B 3LK42 3AA0A 3AA7A 3AA7B 5ADXL 2KZ7A 2KZ7B 3AA1A 1IZNB 1IZNA 3AA1B 3LK2B 5AFUL 3LK3A 3LK3B 5ADXK 3LK2A 3AA6A
chains in the Genus database with same CATH superfamily
1HXXA 2R89A 8PRNA 4D5UA 2IWVA 3AAEB 2Y2XA 3POXA 4RL9A 3AA7A 1BH3A 3PGSA 3C1LA 4RLBA 3LK2B 3JTYA 3NSGA 3PGRA 4UB8O 2R4OA 4JCHA 2PFXA 4O4XA 4D65A 2ZFGA 3BRZA 5DL8A 2R4LA 3EMNX 4FSPA 1P8CA 4FZMA 3LK2A 3AA6B 5TISO 4U9CA 3T20A 2O4DA 4KR4A 2LHFA 4AFKA 3QRCA 3KVDD 2AXTO 5IYUA 2PRNA 5G3AA 3PGUA 4AYMC 3DWNA 2OYOA 1P4TA 2FGQX 1QJ9A 4O3YA 3AA6A 4O3XB 4GCSA 4AKRA 1ZHWA 4N59A 2GE4A 3SYSA 3T24A 4FZNA 1GFOA 4O3ZA 1ORMA 1GFPA 4K3BA 2R4NA 4O3WA 2XTRA 4LSHA 3BEYA 2KZ7B 4D64A 2QEUA 4JFBA 1GFNA 2M07A 1E54A 4K3CA 2XE1A 1ZHTA 2R88A 1KNCA 2W80C 1Q9GA 2K4TA 1GU9A 3AA0B 4LSIA 5DL7A 2ZLDA 5B5EO 3BS0A 1OSMA 5B66O 4N75A 3A2SX 4O49A 2KZ7A 4FRXA 3LK3B 2JMMA 2KXPB 2IJCA 4UB6O 2R4PA 2N2MA 5DIPA 4FMSA 4FQEA 2Y0LA 3LK3A 3HW9A 5GV0A 2KXPA 2J1NA 2J4UP 2KC0A 4GCPA 2OMFA 2MNHA 2JQYA 3AAEA 4XNLA 1PHOA 4G75A 3HWBA 5ADXL 2XG6A 3GP6A 4PUXA 2F1CX 5GTIO 4AYNA 4G9QA 2PORA 5DIKA 2IWWA 3TZGA 4GHBA 2ERVA 3PQUA 4E1TA 2X9KA 2X27X 2XE2A 5H2FO 4B61A 3UPGA 3WI4A 4C4VB 3T0SA 1QJ8A 2O4VA 3VZUX 1ZHZA 2Y0HA 3QRAA 4KRAA 3DWOX 1LW1A 5AFUK 2WJRA 2Y7SA 3VY8X 1T1LA 2LFUA 3JCUO 4BUMX 4RJXA 3SYBA 1HXUA 2JN8A 4XNKA 3SZVA 5PRNA 2N2LA 2WVPA 3PF1A 4KR8A 4AYEC 1Q9FA 4C69X 1QJPA 3VY9X 4GF4A 3UAQA 2CWQA 3WU2O 2AF7A 3DA4A 2K0LA 3SY7A 2WJQA 3G7GA 4C00A 4AYDC 1MM4A 4O4UA 4QQ1A 4AYID 4FZLA 2FGRA 2YPVA 3DZMA 1ZHXA 1G90A 2ODJA 3AA0A 3LVYA 3POQA 3POUA 4N74A 1S5LO 3AA1B 5E79O 6PRNA 5ADXK 2XE3A 3K19A 4G76A 1GFMA 3A0HO 3AAAB 2MHLA 4F4BA 2OUWA 5JDPA 1MM5A 4LSFA 4PR7A 3C5OA 3SY9A 3A0BO 4FT6A 1H6S1 3AA1A 1IZNB 1GFQA 3UU2A 3KZIO 3BRYA 3SZDA 3AAAA 3HOEA 4RJWA 4RLCA 3LK41 5FVNA 2QTKA 4PJ0O 2Q0TA 4AKMA 4FRTA 5DL5A 4FUVA 2W81C 4E1SA 1PRNA 1IZNA 2XMXA 5GTHO 4N58A 2XE5A 2YNKA 4FSOA 3RBHA 4AKRB 3PQSA 1ME5A 3VZTX 4CTDA 3LK42 5G26A 5G39A 3PRNA 4FOZA 4GCQA 2R8AA 4C4VA 2GMYA 2ES9A 3HOLA 3WI5A 5EE2A 4Z3TA 4AUIA 1OPFA 5T5FA 4AZLA 5KAFO 3O0EA 7PRNA 5G38A 5AFUL 3D7IA 3NJTA 3VE1A 1THQA 1YS5A 1BXWA 2Y0KA 3FYXA 4IL6O 4LSEA 3DA3A 1HXTA 2F1VA 4FESA 3VE2A 2KDYA 3V8UA 1ZHYA 1VKEA 2XTQA 3VZWX 5D5DA 1MPFA 3AA7B 2F1TA 3PORA 5KAIO 1T16A 5DL6A 1BT9A 2PRRA 2M06A
chains in the Genus database with same CATH topology
2M07A 1E54A 3AAAA 1HXXA 4KRAA 3HOEA 2XE1A 4RJWA 1ZHTA 1LW1A 5AFUK 1KNCA 3LK41 2W80C 2Y7SA 4RLCA 3AAEB 5FVNA 4D5UA 1Q9GA 2QTKA 2K4TA 2Y2XA 3POXA 2Q0TA 4AKMA 4RL9A 3VY8X 4FRTA 1GU9A 3AA0B 5DL5A 4FUVA 4LSIA 2W81C 5DL7A 2ZLDA 3T20A 3AA7A 1BH3A 2LFUA 1OSMA 4BUMX 4E1SA 1PRNA 3A2SX 4O49A 2KZ7A 4RJXA 3SYBA 4FRXA 1IZNA 1HXUA 2JN8A 2XMXA 3C1LA 4XNKA 3LK3B 3SZVA 4N58A 2JMMA 4RLBA 5PRNA 2XE5A 2N2LA 2YNKA 4FSOA 3LK2B 4KR8A 4AYEC 3RBHA 3JTYA 2KXPB 3NSGA 4AKRB 1Q9FA 3PQSA 4C69X 2IJCA 1ME5A 1QJPA 3VY9X 3VZTX 4GF4A 8PRNA 4JCHA 3UAQA 2N2MA 2CWQA 2PFXA 2AF7A 5DIPA 3DA4A 3LK42 4O4XA 5G26A 4D65A 4FMSA 2K0LA 2ZFGA 3PRNA 2Y0LA 3SY7A 3SZDA 5DL8A 4FOZA 3G7GA 4GCQA 2GMYA 3LK3A 3EMNX 2ES9A 4FSPA 3HOLA 1P8CA 3HW9A 4FZMA 3LK2A 3AA6B 4U9CA 1MM4A 3WI5A 4AYDC 2KXPA 4O4UA 5EE2A 4Z3TA 2J1NA 5GV0A 2J4UP 2KC0A 4GCPA 4QQ1A 2OMFA 4AYID 2MNHA 2O4DA 4KR4A 3AAEA 4FZLA 2FGRA 2LHFA 2YPVA 3QRCA 4XNLA 1PHOA 4AFKA 1ZHXA 4G75A 3KVDD 2ODJA 3AA0A 3LVYA 1G90A 3POQA 4AUIA 3HWBA 3POUA 2PRNA 2XG6A 3GP6A 1OPFA 4AYMC 5ADXL 5T5FA 5IYUA 4PUXA 4AZLA 3AA1B 2OYOA 6PRNA 1P4TA 2FGQX 3O0EA 5AFUL 7PRNA 3D7IA 3VE1A 4AYNA 4G9QA 1QJ9A 2PORA 1THQA 1YS5A 1BXWA 5DIKA 5ADXK 2Y0KA 3FYXA 4O3YA 4LSEA 2XE3A 3AA6A 3DA3A 3K19A 4G76A 1GFMA 4O3XB 3AAAB 3TZGA 2MHLA 4GCSA 4F4BA 4AKRA 4GHBA 1HXTA 2OUWA 2F1VA 2ERVA 1ZHWA 4FESA 4N59A 5JDPA 2GE4A 3SYSA 3VE2A 1MM5A 4LSFA 3PQUA 3C5OA 2KDYA 3SY9A 3T24A 1ZHYA 4FT6A 4FZNA 1VKEA 2XTQA 1GFOA 2X27X 3V8UA 3VZWX 5D5DA 4E1TA 2XE2A 4O3ZA 1ORMA 1GFPA 1MPFA 3AA7B 4O3WA 2XTRA 4LSHA 2F1TA 3PORA 4B61A 3BEYA 1H6S1 3WI4A 3UPGA 2KZ7B 3AA1A 1IZNB 4D64A 5DL6A 2QEUA 1GFQA 3UU2A 1BT9A 3T0SA 1QJ8A 2O4VA 4JFBA 2PRRA 1GFNA 1ZHZA 2M06A 2Y0HA 3VZUX 3QRAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KXP A;  2KXP B;  3AAA A;  3AAA B;  4AKR B;  4AKR A;  5AFU K;  3LK4 1;  3AAE B;  3AAE A;  3AA6 B;  3AA0 B;  3LK4 2;  3AA0 A;  3AA7 A;  3AA7 B;  5ADX L;  2KZ7 A;  2KZ7 B;  3AA1 A;  1IZN B;  1IZN A;  3AA1 B;  3LK2 B;  5AFU L;  3LK3 A;  3LK3 B;  5ADX K;  3LK2 A;  3AA6 A; 
#chains in the Genus database with same CATH topology
 1HXX A;  2R89 A;  8PRN A;  4D5U A;  2IWV A;  3AAE B;  2Y2X A;  3POX A;  4RL9 A;  3AA7 A;  1BH3 A;  3PGS A;  3C1L A;  4RLB A;  3LK2 B;  3JTY A;  3NSG A;  3PGR A;  4UB8 O;  2R4O A;  4JCH A;  2PFX A;  4O4X A;  4D65 A;  2ZFG A;  3BRZ A;  5DL8 A;  2R4L A;  3EMN X;  4FSP A;  1P8C A;  4FZM A;  3LK2 A;  3AA6 B;  5TIS O;  4U9C A;  3T20 A;  2O4D A;  4KR4 A;  2LHF A;  4AFK A;  3QRC A;  3KVD D;  2AXT O;  5IYU A;  2PRN A;  5G3A A;  3PGU A;  4AYM C;  3DWN A;  2OYO A;  1P4T A;  2FGQ X;  1QJ9 A;  4O3Y A;  3AA6 A;  4O3X B;  4GCS A;  4AKR A;  1ZHW A;  4N59 A;  2GE4 A;  3SYS A;  3T24 A;  4FZN A;  1GFO A;  4O3Z A;  1ORM A;  1GFP A;  4K3B A;  2R4N A;  4O3W A;  2XTR A;  4LSH A;  3BEY A;  2KZ7 B;  4D64 A;  2QEU A;  4JFB A;  1GFN A;  2M07 A;  1E54 A;  4K3C A;  2XE1 A;  1ZHT A;  2R88 A;  1KNC A;  2W80 C;  1Q9G A;  2K4T A;  1GU9 A;  3AA0 B;  4LSI A;  5DL7 A;  2ZLD A;  5B5E O;  3BS0 A;  1OSM A;  5B66 O;  4N75 A;  3A2S X;  4O49 A;  2KZ7 A;  4FRX A;  3LK3 B;  2JMM A;  2KXP B;  2IJC A;  4UB6 O;  2R4P A;  2N2M A;  5DIP A;  4FMS A;  4FQE A;  2Y0L A;  3LK3 A;  3HW9 A;  5GV0 A;  2KXP A;  2J1N A;  2J4U P;  2KC0 A;  4GCP A;  2OMF A;  2MNH A;  2JQY A;  3AAE A;  4XNL A;  1PHO A;  4G75 A;  3HWB A;  5ADX L;  2XG6 A;  3GP6 A;  4PUX A;  2F1C X;  5GTI O;  4AYN A;  4G9Q A;  2POR A;  5DIK A;  2IWW A;  3TZG A;  4GHB A;  2ERV A;  3PQU A;  4E1T A;  2X9K A;  2X27 X;  2XE2 A;  5H2F O;  4B61 A;  3UPG A;  3WI4 A;  4C4V B;  3T0S A;  1QJ8 A;  2O4V A;  3VZU X;  1ZHZ A;  2Y0H A;  3QRA A;  4KRA A;  3DWO X;  1LW1 A;  5AFU K;  2WJR A;  2Y7S A;  3VY8 X;  1T1L A;  2LFU A;  3JCU O;  4BUM X;  4RJX A;  3SYB A;  1HXU A;  2JN8 A;  4XNK A;  3SZV A;  5PRN A;  2N2L A;  2WVP A;  3PF1 A;  4KR8 A;  4AYE C;  1Q9F A;  4C69 X;  1QJP A;  3VY9 X;  4GF4 A;  3UAQ A;  2CWQ A;  3WU2 O;  2AF7 A;  3DA4 A;  2K0L A;  3SY7 A;  2WJQ A;  3G7G A;  4C00 A;  4AYD C;  1MM4 A;  4O4U A;  4QQ1 A;  4AYI D;  4FZL A;  2FGR A;  2YPV A;  3DZM A;  1ZHX A;  1G90 A;  2ODJ A;  3AA0 A;  3LVY A;  3POQ A;  3POU A;  4N74 A;  1S5L O;  3AA1 B;  5E79 O;  6PRN A;  5ADX K;  2XE3 A;  3K19 A;  4G76 A;  1GFM A;  3A0H O;  3AAA B;  2MHL A;  4F4B A;  2OUW A;  5JDP A;  1MM5 A;  4LSF A;  4PR7 A;  3C5O A;  3SY9 A;  3A0B O;  4FT6 A;  1H6S 1;  3AA1 A;  1IZN B;  1GFQ A;  3UU2 A;  3KZI O;  3BRY A;  3SZD A;  3AAA A;  3HOE A;  4RJW A;  4RLC A;  3LK4 1;  5FVN A;  2QTK A;  4PJ0 O;  2Q0T A;  4AKM A;  4FRT A;  5DL5 A;  4FUV A;  2W81 C;  4E1S A;  1PRN A;  1IZN A;  2XMX A;  5GTH O;  4N58 A;  2XE5 A;  2YNK A;  4FSO A;  3RBH A;  4AKR B;  3PQS A;  1ME5 A;  3VZT X;  4CTD A;  3LK4 2;  5G26 A;  5G39 A;  3PRN A;  4FOZ A;  4GCQ A;  2R8A A;  4C4V A;  2GMY A;  2ES9 A;  3HOL A;  3WI5 A;  5EE2 A;  4Z3T A;  4AUI A;  1OPF A;  5T5F A;  4AZL A;  5KAF O;  3O0E A;  7PRN A;  5G38 A;  5AFU L;  3D7I A;  3NJT A;  3VE1 A;  1THQ A;  1YS5 A;  1BXW A;  2Y0K A;  3FYX A;  4IL6 O;  4LSE A;  3DA3 A;  1HXT A;  2F1V A;  4FES A;  3VE2 A;  2KDY A;  3V8U A;  1ZHY A;  1VKE A;  2XTQ A;  3VZW X;  5D5D A;  1MPF A;  3AA7 B;  2F1T A;  3POR A;  5KAI O;  1T16 A;  5DL6 A;  1BT9 A;  2PRR A;  2M06 A; 
#chains in the Genus database with same CATH homology
 2M07 A;  1E54 A;  3AAA A;  1HXX A;  4KRA A;  3HOE A;  2XE1 A;  4RJW A;  1ZHT A;  1LW1 A;  5AFU K;  1KNC A;  3LK4 1;  2W80 C;  2Y7S A;  4RLC A;  3AAE B;  5FVN A;  4D5U A;  1Q9G A;  2QTK A;  2K4T A;  2Y2X A;  3POX A;  2Q0T A;  4AKM A;  4RL9 A;  3VY8 X;  4FRT A;  1GU9 A;  3AA0 B;  5DL5 A;  4FUV A;  4LSI A;  2W81 C;  5DL7 A;  2ZLD A;  3T20 A;  3AA7 A;  1BH3 A;  2LFU A;  1OSM A;  4BUM X;  4E1S A;  1PRN A;  3A2S X;  4O49 A;  2KZ7 A;  4RJX A;  3SYB A;  4FRX A;  1IZN A;  1HXU A;  2JN8 A;  2XMX A;  3C1L A;  4XNK A;  3LK3 B;  3SZV A;  4N58 A;  2JMM A;  4RLB A;  5PRN A;  2XE5 A;  2N2L A;  2YNK A;  4FSO A;  3LK2 B;  4KR8 A;  4AYE C;  3RBH A;  3JTY A;  2KXP B;  3NSG A;  4AKR B;  1Q9F A;  3PQS A;  4C69 X;  2IJC A;  1ME5 A;  1QJP A;  3VY9 X;  3VZT X;  4GF4 A;  8PRN A;  4JCH A;  3UAQ A;  2N2M A;  2CWQ A;  2PFX A;  2AF7 A;  5DIP A;  3DA4 A;  3LK4 2;  4O4X A;  5G26 A;  4D65 A;  4FMS A;  2K0L A;  2ZFG A;  3PRN A;  2Y0L A;  3SY7 A;  3SZD A;  5DL8 A;  4FOZ A;  3G7G A;  4GCQ A;  2GMY A;  3LK3 A;  3EMN X;  2ES9 A;  4FSP A;  3HOL A;  1P8C A;  3HW9 A;  4FZM A;  3LK2 A;  3AA6 B;  4U9C A;  1MM4 A;  3WI5 A;  4AYD C;  2KXP A;  4O4U A;  5EE2 A;  4Z3T A;  2J1N A;  5GV0 A;  2J4U P;  2KC0 A;  4GCP A;  4QQ1 A;  2OMF A;  4AYI D;  2MNH A;  2O4D A;  4KR4 A;  3AAE A;  4FZL A;  2FGR A;  2LHF A;  2YPV A;  3QRC A;  4XNL A;  1PHO A;  4AFK A;  1ZHX A;  4G75 A;  3KVD D;  2ODJ A;  3AA0 A;  3LVY A;  1G90 A;  3POQ A;  4AUI A;  3HWB A;  3POU A;  2PRN A;  2XG6 A;  3GP6 A;  1OPF A;  4AYM C;  5ADX L;  5T5F A;  5IYU A;  4PUX A;  4AZL A;  3AA1 B;  2OYO A;  6PRN A;  1P4T A;  2FGQ X;  3O0E A;  5AFU L;  7PRN A;  3D7I A;  3VE1 A;  4AYN A;  4G9Q A;  1QJ9 A;  2POR A;  1THQ A;  1YS5 A;  1BXW A;  5DIK A;  5ADX K;  2Y0K A;  3FYX A;  4O3Y A;  4LSE A;  2XE3 A;  3AA6 A;  3DA3 A;  3K19 A;  4G76 A;  1GFM A;  4O3X B;  3AAA B;  3TZG A;  2MHL A;  4GCS A;  4F4B A;  4AKR A;  4GHB A;  1HXT A;  2OUW A;  2F1V A;  2ERV A;  1ZHW A;  4FES A;  4N59 A;  5JDP A;  2GE4 A;  3SYS A;  3VE2 A;  1MM5 A;  4LSF A;  3PQU A;  3C5O A;  2KDY A;  3SY9 A;  3T24 A;  1ZHY A;  4FT6 A;  4FZN A;  1VKE A;  2XTQ A;  1GFO A;  2X27 X;  3V8U A;  3VZW X;  5D5D A;  4E1T A;  2XE2 A;  4O3Z A;  1ORM A;  1GFP A;  1MPF A;  3AA7 B;  4O3W A;  2XTR A;  4LSH A;  2F1T A;  3POR A;  4B61 A;  3BEY A;  1H6S 1;  3WI4 A;  3UPG A;  2KZ7 B;  3AA1 A;  1IZN B;  4D64 A;  5DL6 A;  2QEU A;  1GFQ A;  3UU2 A;  1BT9 A;  3T0S A;  1QJ8 A;  2O4V A;  4JFB A;  2PRR A;  1GFN A;  1ZHZ A;  2M06 A;  2Y0H A;  3VZU X;  3QRA A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...