3LK3A

Crystal structure of capz bound to the cpi and csi uncapping motifs from carmil
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
270
structure length
266
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDLKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords F-actin-capping protein subunit alpha-1
publication title Structural characterization of a capping protein interaction motif defines a family of actin filament regulators
doi rcsb
source organism Gallus gallus
total genus 76
structure length 266
sequence length 270
ec nomenclature
pdb deposition date 2010-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3lk3A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3lk3A02
4AKRA 3AA0B 3LK2A 5AFUK 2KXPB 3AAEA 5ADXK 3AA7A 2KZ7A 3LK3A 3LK41 3AA6B 3AAAB 1IZNA 4AKRB 3LK2B 3AAEB 3AA7B 2KZ7B 3LK42 3LK3B 1IZNB 3AA1A 3AA0A 2KXPA 5AFUL 5ADXL 3AA6A 3AAAA 3AA1B
chains in the Genus database with same CATH superfamily
2WVPA 6PRNA 2XE1A 3C5OA 5DL7A 2YPVA 4JFBA 4AKRB 2GE4A 4D65A 4K3CA 2Y0LA 3A0BO 3AA7B 1BH3A 4RLCA 4PUXA 2LHFA 1GFMA 5DL8A 4RJXA 4AYEC 4C4VB 4N75A 1H6S1 4RJWA 2ES9A 4AKMA 5IYUA 4N58A 4FMSA 3WU2O 5KAFO 1GFQA 5FVNA 3PGSA 3SZVA 3UPGA 4FESA 1MM4A 4F4BA 2YNKA 3AA1B 2Y0KA 4O3ZA 5TISO 3GP6A 1E54A 4GHBA 3JCUO 2ERVA 1PHOA 4O3YA 1S5LO 3TZGA 2KDYA 3AA0B 2Y2XA 3A0HO 3T0SA 3PQUA 3C1LA 3D7IA 3LVYA 3VZTX 4XNLA 2K0LA 3LK3B 1GFNA 4O4XA 3T24A 4KR4A 4AFKA 3WI4A 4AYDC 5AFUK 4KRAA 5ADXK 3LK41 5GTIO 2Q0TA 2KC0A 1ORMA 5DL6A 3T20A 5E79O 1Q9FA 1ME5A 2R4LA 2PRNA 3PGRA 1G90A 5B66O 3SYBA 3DA4A 3SY9A 3AA6A 5G38A 3LK2A 2KXPB 3BRZA 2LFUA 2R4NA 3AAAB 2JN8A 1BT9A 2XMXA 2IJCA 5DL5A 5JDPA 1IZNB 3PQSA 2JQYA 1ZHWA 2AF7A 3POUA 1T16A 5PRNA 8PRNA 4N74A 3AAEA 2KZ7A 2WJRA 7PRNA 5G3AA 3UU2A 2XE2A 3VY8X 4O49A 4FRXA 3HOEA 3DA3A 2R8AA 3KVDD 1OPFA 3LK42 4PR7A 1MM5A 2QEUA 4FZMA 3RBHA 3SZDA 5AFUL 1MPFA 5ADXL 3DWOX 4FSOA 1PRNA 3O0EA 1THQA 1GFPA 4IL6O 4FOZA 5B5EO 4FSPA 1QJ9A 1HXXA 2MHLA 2XE5A 4LSFA 3WI5A 4RL9A 5GTHO 3PF1A 5D5DA 3HOLA 4C69X 1P8CA 3SY7A 2AXTO 2J4UP 3PGUA 3PRNA 1ZHZA 2M07A 2X27X 2O4DA 4LSEA 3VZWX 4FT6A 2R89A 4AKRA 4C00A 4UB6O 3PORA 5KAIO 2FGQX 3AA7A 1VKEA 4FZNA 2R4OA 5EE2A 1LW1A 2QTKA 3VE1A 4C4VA 3VZUX 3HWBA 3EMNX 4E1SA 4GCQA 2F1TA 3POQA 1HXUA 2XE3A 2XTQA 3DZMA 3FYXA 2PRRA 4B61A 4AYNA 3BEYA 2OMFA 4D64A 2O4VA 3AA1A 4LSHA 4E1TA 2GMYA 4O4UA 2M06A 2XTRA 1KNCA 3HW9A 2Y0HA 4O3XB 2R88A 1BXWA 4GF4A 2IWWA 2OYOA 1ZHYA 4G9QA 2JMMA 2XG6A 2CWQA 4G76A 3DWNA 2OUWA 1T1LA 2N2MA 3NSGA 1OSMA 3AA0A 2ODJA 4GCPA 2W80C 1Q9GA 1ZHXA 4LSIA 2Y7SA 3QRCA 3K19A 3BS0A 3LK3A 5DIKA 3AA6B 2WJQA 4CTDA 3LK2B 4O3WA 3NJTA 2K4TA 3KZIO 2F1VA 3G7GA 1HXTA 3POXA 5H2FO 4UB8O 1QJ8A 5G26A 4BUMX 4U9CA 4FUVA 1GFOA 2MNHA 3V8UA 4D5UA 5GV0A 5T5FA 2F1CX 2W81C 1QJPA 3AAEB 2KZ7B 4RLBA 4GCSA 4AUIA 2N2LA 2KXPA 4KR8A 3JTYA 2X9KA 3AAAA 2ZLDA 4N59A 4AYMC 1IZNA 4FQEA 4JCHA 4PJ0O 4AYID 5G39A 5DIPA 4G75A 3SYSA 2PORA 3VY9X 2FGRA 1P4TA 4AZLA 4Z3TA 4XNKA 4QQ1A 4FZLA 3A2SX 4K3BA 1ZHTA 3UAQA 2PFXA 4FRTA 3VE2A 2IWVA 1YS5A 3QRAA 1GU9A 2J1NA 3BRYA 2R4PA 2ZFGA
chains in the Genus database with same CATH topology
6PRNA 1Q9GA 1ZHXA 5AFUK 2XE1A 3C5OA 4KRAA 4LSIA 5D5DA 5ADXK 2Y7SA 3QRCA 3K19A 5DL7A 3LK3A 3LK41 5DIKA 2YPVA 3AA6B 4JFBA 2Q0TA 2KC0A 3HOLA 4C69X 1P8CA 4AKRB 1ORMA 3LK2B 2GE4A 4D65A 4O3WA 3SY7A 5DL6A 2Y0LA 3T20A 2J4UP 3AA7B 1Q9FA 2K4TA 1BH3A 4RLCA 1ME5A 4PUXA 2F1VA 2LHFA 1HXTA 2PRNA 1GFMA 1ZHZA 2M07A 3G7GA 3POXA 3PRNA 2X27X 5DL8A 1G90A 2O4DA 3SYBA 4LSEA 4RJXA 4AYEC 3DA4A 3SY9A 3AA6A 4FT6A 3VZWX 1QJ8A 5G26A 4AKRA 1H6S1 4BUMX 4U9CA 3LK2A 4FUVA 2KXPB 4RJWA 1GFOA 2ES9A 2MNHA 3PORA 2FGQX 3V8UA 4AKMA 4D5UA 5IYUA 3AA7A 4FMSA 1VKEA 4N58A 5GV0A 2LFUA 5T5FA 3AAAB 2W81C 2JN8A 4FZNA 1BT9A 1GFQA 2XMXA 1QJPA 3AAEB 5FVNA 5EE2A 2IJCA 1LW1A 2KZ7B 4RLBA 2QTKA 5DL5A 4GCSA 3VE1A 4AUIA 5JDPA 1IZNB 3SZVA 3VZUX 3HWBA 3EMNX 3PQSA 1ZHWA 3UPGA 2N2LA 2AF7A 2KXPA 4KR8A 4FESA 1MM4A 3POUA 4GCQA 4E1SA 4F4BA 3JTYA 2F1TA 5PRNA 2YNKA 3AAAA 3AA1B 8PRNA 2ZLDA 2Y0KA 3POQA 4O3ZA 1HXUA 3AAEA 2XE3A 2KZ7A 4N59A 4AYMC 3UU2A 7PRNA 2XE2A 2XTQA 3FYXA 1IZNA 2PRRA 4JCHA 3VY8X 4O49A 4FRXA 3HOEA 3GP6A 4AYNA 4B61A 3DA3A 3KVDD 1E54A 3BEYA 2OMFA 4D64A 4GHBA 2O4VA 4AYID 1OPFA 2ERVA 1PHOA 3LK42 4O3YA 1MM5A 3AA1A 5DIPA 4LSHA 2QEUA 4E1TA 4FZMA 4G75A 2GMYA 3SYSA 2PORA 3RBHA 4O4UA 2FGRA 2M06A 2XTRA 3SZDA 3VY9X 1P4TA 3TZGA 5AFUL 1MPFA 4AZLA 5ADXL 4Z3TA 4XNKA 1KNCA 4QQ1A 4FSOA 1PRNA 2KDYA 3O0EA 1THQA 3AA0B 4FZLA 1GFPA 3A2SX 2Y2XA 3HW9A 2Y0HA 4O3XB 4GF4A 1BXWA 4FOZA 3T0SA 3PQUA 2OYOA 3C1LA 1ZHYA 3D7IA 3LVYA 4G9QA 1ZHTA 2JMMA 4FSPA 2XG6A 3VZTX 3UAQA 2CWQA 2PFXA 1QJ9A 4G76A 4XNLA 2OUWA 4FRTA 3WI4A 3VE2A 2N2MA 1HXXA 2MHLA 3NSGA 2K0LA 2XE5A 3LK3B 1OSMA 1YS5A 1GFNA 3AA0A 4LSFA 3QRAA 1GU9A 2J1NA 4O4XA 2ODJA 4GCPA 3WI5A 4RL9A 3T24A 4KR4A 2W80C 4AFKA 2ZFGA 4AYDC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AKR A;  3AA0 B;  3LK2 A;  5AFU K;  2KXP B;  3AAE A;  5ADX K;  3AA7 A;  2KZ7 A;  3LK3 A;  3LK4 1;  3AA6 B;  3AAA B;  1IZN A;  4AKR B;  3LK2 B;  3AAE B;  3AA7 B;  2KZ7 B;  3LK4 2;  3LK3 B;  1IZN B;  3AA1 A;  3AA0 A;  2KXP A;  5AFU L;  5ADX L;  3AA6 A;  3AAA A;  3AA1 B; 
#chains in the Genus database with same CATH topology
 2WVP A;  6PRN A;  2XE1 A;  3C5O A;  5DL7 A;  2YPV A;  4JFB A;  4AKR B;  2GE4 A;  4D65 A;  4K3C A;  2Y0L A;  3A0B O;  3AA7 B;  1BH3 A;  4RLC A;  4PUX A;  2LHF A;  1GFM A;  5DL8 A;  4RJX A;  4AYE C;  4C4V B;  4N75 A;  1H6S 1;  4RJW A;  2ES9 A;  4AKM A;  5IYU A;  4N58 A;  4FMS A;  3WU2 O;  5KAF O;  1GFQ A;  5FVN A;  3PGS A;  3SZV A;  3UPG A;  4FES A;  1MM4 A;  4F4B A;  2YNK A;  3AA1 B;  2Y0K A;  4O3Z A;  5TIS O;  3GP6 A;  1E54 A;  4GHB A;  3JCU O;  2ERV A;  1PHO A;  4O3Y A;  1S5L O;  3TZG A;  2KDY A;  3AA0 B;  2Y2X A;  3A0H O;  3T0S A;  3PQU A;  3C1L A;  3D7I A;  3LVY A;  3VZT X;  4XNL A;  2K0L A;  3LK3 B;  1GFN A;  4O4X A;  3T24 A;  4KR4 A;  4AFK A;  3WI4 A;  4AYD C;  5AFU K;  4KRA A;  5ADX K;  3LK4 1;  5GTI O;  2Q0T A;  2KC0 A;  1ORM A;  5DL6 A;  3T20 A;  5E79 O;  1Q9F A;  1ME5 A;  2R4L A;  2PRN A;  3PGR A;  1G90 A;  5B66 O;  3SYB A;  3DA4 A;  3SY9 A;  3AA6 A;  5G38 A;  3LK2 A;  2KXP B;  3BRZ A;  2LFU A;  2R4N A;  3AAA B;  2JN8 A;  1BT9 A;  2XMX A;  2IJC A;  5DL5 A;  5JDP A;  1IZN B;  3PQS A;  2JQY A;  1ZHW A;  2AF7 A;  3POU A;  1T16 A;  5PRN A;  8PRN A;  4N74 A;  3AAE A;  2KZ7 A;  2WJR A;  7PRN A;  5G3A A;  3UU2 A;  2XE2 A;  3VY8 X;  4O49 A;  4FRX A;  3HOE A;  3DA3 A;  2R8A A;  3KVD D;  1OPF A;  3LK4 2;  4PR7 A;  1MM5 A;  2QEU A;  4FZM A;  3RBH A;  3SZD A;  5AFU L;  1MPF A;  5ADX L;  3DWO X;  4FSO A;  1PRN A;  3O0E A;  1THQ A;  1GFP A;  4IL6 O;  4FOZ A;  5B5E O;  4FSP A;  1QJ9 A;  1HXX A;  2MHL A;  2XE5 A;  4LSF A;  3WI5 A;  4RL9 A;  5GTH O;  3PF1 A;  5D5D A;  3HOL A;  4C69 X;  1P8C A;  3SY7 A;  2AXT O;  2J4U P;  3PGU A;  3PRN A;  1ZHZ A;  2M07 A;  2X27 X;  2O4D A;  4LSE A;  3VZW X;  4FT6 A;  2R89 A;  4AKR A;  4C00 A;  4UB6 O;  3POR A;  5KAI O;  2FGQ X;  3AA7 A;  1VKE A;  4FZN A;  2R4O A;  5EE2 A;  1LW1 A;  2QTK A;  3VE1 A;  4C4V A;  3VZU X;  3HWB A;  3EMN X;  4E1S A;  4GCQ A;  2F1T A;  3POQ A;  1HXU A;  2XE3 A;  2XTQ A;  3DZM A;  3FYX A;  2PRR A;  4B61 A;  4AYN A;  3BEY A;  2OMF A;  4D64 A;  2O4V A;  3AA1 A;  4LSH A;  4E1T A;  2GMY A;  4O4U A;  2M06 A;  2XTR A;  1KNC A;  3HW9 A;  2Y0H A;  4O3X B;  2R88 A;  1BXW A;  4GF4 A;  2IWW A;  2OYO A;  1ZHY A;  4G9Q A;  2JMM A;  2XG6 A;  2CWQ A;  4G76 A;  3DWN A;  2OUW A;  1T1L A;  2N2M A;  3NSG A;  1OSM A;  3AA0 A;  2ODJ A;  4GCP A;  2W80 C;  1Q9G A;  1ZHX A;  4LSI A;  2Y7S A;  3QRC A;  3K19 A;  3BS0 A;  3LK3 A;  5DIK A;  3AA6 B;  2WJQ A;  4CTD A;  3LK2 B;  4O3W A;  3NJT A;  2K4T A;  3KZI O;  2F1V A;  3G7G A;  1HXT A;  3POX A;  5H2F O;  4UB8 O;  1QJ8 A;  5G26 A;  4BUM X;  4U9C A;  4FUV A;  1GFO A;  2MNH A;  3V8U A;  4D5U A;  5GV0 A;  5T5F A;  2F1C X;  2W81 C;  1QJP A;  3AAE B;  2KZ7 B;  4RLB A;  4GCS A;  4AUI A;  2N2L A;  2KXP A;  4KR8 A;  3JTY A;  2X9K A;  3AAA A;  2ZLD A;  4N59 A;  4AYM C;  1IZN A;  4FQE A;  4JCH A;  4PJ0 O;  4AYI D;  5G39 A;  5DIP A;  4G75 A;  3SYS A;  2POR A;  3VY9 X;  2FGR A;  1P4T A;  4AZL A;  4Z3T A;  4XNK A;  4QQ1 A;  4FZL A;  3A2S X;  4K3B A;  1ZHT A;  3UAQ A;  2PFX A;  4FRT A;  3VE2 A;  2IWV A;  1YS5 A;  3QRA A;  1GU9 A;  2J1N A;  3BRY A;  2R4P A;  2ZFG A; 
#chains in the Genus database with same CATH homology
 6PRN A;  1Q9G A;  1ZHX A;  5AFU K;  2XE1 A;  3C5O A;  4KRA A;  4LSI A;  5D5D A;  5ADX K;  2Y7S A;  3QRC A;  3K19 A;  5DL7 A;  3LK3 A;  3LK4 1;  5DIK A;  2YPV A;  3AA6 B;  4JFB A;  2Q0T A;  2KC0 A;  3HOL A;  4C69 X;  1P8C A;  4AKR B;  1ORM A;  3LK2 B;  2GE4 A;  4D65 A;  4O3W A;  3SY7 A;  5DL6 A;  2Y0L A;  3T20 A;  2J4U P;  3AA7 B;  1Q9F A;  2K4T A;  1BH3 A;  4RLC A;  1ME5 A;  4PUX A;  2F1V A;  2LHF A;  1HXT A;  2PRN A;  1GFM A;  1ZHZ A;  2M07 A;  3G7G A;  3POX A;  3PRN A;  2X27 X;  5DL8 A;  1G90 A;  2O4D A;  3SYB A;  4LSE A;  4RJX A;  4AYE C;  3DA4 A;  3SY9 A;  3AA6 A;  4FT6 A;  3VZW X;  1QJ8 A;  5G26 A;  4AKR A;  1H6S 1;  4BUM X;  4U9C A;  3LK2 A;  4FUV A;  2KXP B;  4RJW A;  1GFO A;  2ES9 A;  2MNH A;  3POR A;  2FGQ X;  3V8U A;  4AKM A;  4D5U A;  5IYU A;  3AA7 A;  4FMS A;  1VKE A;  4N58 A;  5GV0 A;  2LFU A;  5T5F A;  3AAA B;  2W81 C;  2JN8 A;  4FZN A;  1BT9 A;  1GFQ A;  2XMX A;  1QJP A;  3AAE B;  5FVN A;  5EE2 A;  2IJC A;  1LW1 A;  2KZ7 B;  4RLB A;  2QTK A;  5DL5 A;  4GCS A;  3VE1 A;  4AUI A;  5JDP A;  1IZN B;  3SZV A;  3VZU X;  3HWB A;  3EMN X;  3PQS A;  1ZHW A;  3UPG A;  2N2L A;  2AF7 A;  2KXP A;  4KR8 A;  4FES A;  1MM4 A;  3POU A;  4GCQ A;  4E1S A;  4F4B A;  3JTY A;  2F1T A;  5PRN A;  2YNK A;  3AAA A;  3AA1 B;  8PRN A;  2ZLD A;  2Y0K A;  3POQ A;  4O3Z A;  1HXU A;  3AAE A;  2XE3 A;  2KZ7 A;  4N59 A;  4AYM C;  3UU2 A;  7PRN A;  2XE2 A;  2XTQ A;  3FYX A;  1IZN A;  2PRR A;  4JCH A;  3VY8 X;  4O49 A;  4FRX A;  3HOE A;  3GP6 A;  4AYN A;  4B61 A;  3DA3 A;  3KVD D;  1E54 A;  3BEY A;  2OMF A;  4D64 A;  4GHB A;  2O4V A;  4AYI D;  1OPF A;  2ERV A;  1PHO A;  3LK4 2;  4O3Y A;  1MM5 A;  3AA1 A;  5DIP A;  4LSH A;  2QEU A;  4E1T A;  4FZM A;  4G75 A;  2GMY A;  3SYS A;  2POR A;  3RBH A;  4O4U A;  2FGR A;  2M06 A;  2XTR A;  3SZD A;  3VY9 X;  1P4T A;  3TZG A;  5AFU L;  1MPF A;  4AZL A;  5ADX L;  4Z3T A;  4XNK A;  1KNC A;  4QQ1 A;  4FSO A;  1PRN A;  2KDY A;  3O0E A;  1THQ A;  3AA0 B;  4FZL A;  1GFP A;  3A2S X;  2Y2X A;  3HW9 A;  2Y0H A;  4O3X B;  4GF4 A;  1BXW A;  4FOZ A;  3T0S A;  3PQU A;  2OYO A;  3C1L A;  1ZHY A;  3D7I A;  3LVY A;  4G9Q A;  1ZHT A;  2JMM A;  4FSP A;  2XG6 A;  3VZT X;  3UAQ A;  2CWQ A;  2PFX A;  1QJ9 A;  4G76 A;  4XNL A;  2OUW A;  4FRT A;  3WI4 A;  3VE2 A;  2N2M A;  1HXX A;  2MHL A;  3NSG A;  2K0L A;  2XE5 A;  3LK3 B;  1OSM A;  1YS5 A;  1GFN A;  3AA0 A;  4LSF A;  3QRA A;  1GU9 A;  2J1N A;  4O4X A;  2ODJ A;  4GCP A;  3WI5 A;  4RL9 A;  3T24 A;  4KR4 A;  2W80 C;  4AFK A;  2ZFG A;  4AYD C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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