3LK3A

Crystal structure of capz bound to the cpi and csi uncapping motifs from carmil
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
270
structure length
266
Chain Sequence
b'RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDLKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords F-actin-capping protein subunit alpha-1
publication title Structural characterization of a capping protein interaction motif defines a family of actin filament regulators
doi rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 76
structure length 266
sequence length 270
ec nomenclature
pdb deposition date 2010-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3lk3A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3lk3A02
5AFUK 5ADXK 3AA0A 2KXPB 3AA7B 3LK2B 3AAAB 3AAEA 3LK3A 1IZNB 3AA1B 4AKRB 2KXPA 3AA7A 3LK2A 5ADXL 3AA6B 2KZ7B 5AFUL 3AAAA 4AKRA 3AA1A 1IZNA 3AA0B 3LK42 2KZ7A 3AA6A 3LK41 3AAEB 3LK3B
chains in the Genus database with same CATH superfamily
2AF7A 3PQUA 3LK3A 3A0BO 2W80C 2R8AA 4AUIA 4O3WA 3PQSA 4LSEA 5GTIO 4AYID 1T1LA 1T16A 2PRRA 3NSGA 2N2MA 1ORMA 2Q0TA 5KAFO 3LK2B 3A2SX 6PRNA 3JTYA 3VZUX 3LK2A 4FZLA 3BRYA 2F1TA 4FSOA 3POXA 3LK42 3VZTX 4G76A 3SY7A 5G3AA 3POQA 1H6S1 4BUMX 5H2FO 2AXTO 1HXTA 4N58A 2WVPA 3SY9A 4C69X 2XMXA 3HWBA 3T20A 4JFBA 4XNLA 1BH3A 5GTHO 3SZVA 3PRNA 2KC0A 3D7IA 3LK41 8PRNA 4GF4A 5DL8A 3BRZA 3LK3B 1IZNB 4Z3TA 4KRAA 3WU2O 4QQ1A 4PR7A 2Y0LA 2J1NA 4RLBA 2M07A 1IZNA 3DA3A 4RJXA 3VZWX 2R4PA 4G9QA 4KR8A 3BS0A 2OMFA 1QJPA 4D5UA 1ZHXA 5AFUK 5DL6A 2J4UP 5TISO 4F4BA 1Q9FA 2ERVA 4FQEA 4AYMC 2JN8A 5G39A 5G38A 3AA6B 2PFXA 3LVYA 4C00A 1GFOA 3K19A 3VY9X 3AA6A 2YPVA 2QTKA 1YS5A 2XE1A 2XE5A 3PGUA 3JCUO 4E1TA 3O0EA 3C1LA 4E1SA 3RBHA 2O4DA 2Y0HA 2F1CX 3A0HO 3AA0B 5DL7A 4PUXA 1OSMA 1GFPA 3AA0A 3AA7B 3HOEA 1VKEA 3PF1A 2R89A 4PJ0O 4GCSA 4LSHA 4U9CA 3AA7A 2K0LA 4AKRA 2MHLA 3T0SA 4O49A 4UB6O 1GU9A 3DA4A 4JCHA 3KZIO 2KXPB 2LHFA 1HXXA 5GV0A 2KDYA 4O3ZA 2KXPA 5JDPA 3DZMA 5T5FA 1ZHYA 1BT9A 2GMYA 3QRAA 4FESA 4IL6O 3UAQA 3PGRA 4FRXA 4RJWA 3DWNA 3VE1A 3G7GA 1GFNA 3UU2A 5DIKA 4N75A 2M06A 1S5LO 1G90A 4AYEC 3GP6A 3VE2A 3TZGA 3NJTA 4O4UA 2CWQA 4AYDC 2WJQA 2KZ7A 4UB8O 2F1VA 2FGRA 3BEYA 2ZLDA 3SZDA 2MNHA 4RL9A 3AAAB 1GFMA 1HXUA 4KR4A 2XG6A 4GHBA 2R4NA 1THQA 5IYUA 4FOZA 3AAAA 2ES9A 3HOLA 4O3XB 3WI5A 4N74A 5E79O 4FRTA 1OPFA 4RLCA 5FVNA 2R4LA 1MM5A 1ME5A 5D5DA 5KAIO 5AFUL 2N2LA 2OUWA 2YNKA 2XTRA 2JMMA 2X27X 3SYSA 5ADXK 2Y7SA 4AKMA 2ZFGA 4C4VB 4AKRB 4GCPA 4FMSA 4C4VA 3C5OA 5DL5A 4O4XA 5B5EO 1KNCA 4K3CA 2JQYA 3T24A 2IWWA 2WJRA 4G75A 4O3YA 3UPGA 2PRNA 3PORA 2XE2A 2OYOA 5ADXL 4GCQA 4B61A 4LSIA 4LSFA 3QRCA 5PRNA 3PGSA 2XTQA 4FT6A 4FSPA 1MM4A 7PRNA 4N59A 3WI4A 1MPFA 2X9KA 3SYBA 1ZHZA 4AZLA 2IWVA 2K4TA 3AA1B 3EMNX 1P8CA 2KZ7B 5EE2A 3AA1A 1ZHWA 2R88A 1QJ8A 1QJ9A 2FGQX 2Y2XA 2R4OA 5DIPA 4D64A 2ODJA 4FZMA 3V8UA 3HW9A 4D65A 4CTDA 1LW1A 3POUA 1E54A 2LFUA 3KVDD 5B66O 1PHOA 4XNKA 1P4TA 1GFQA 4AYNA 2IJCA 4FUVA 2XE3A 3AAEB 1BXWA 1ZHTA 4FZNA 1Q9GA 2GE4A 2W81C 3AAEA 4K3BA 3DWOX 2PORA 1PRNA 2QEUA 3VY8X 4AFKA 2O4VA 2Y0KA 5G26A 3FYXA
chains in the Genus database with same CATH topology
5AFUK 5DL6A 2J4UP 3UU2A 2AF7A 3PQUA 4G75A 5DIKA 4F4BA 1Q9FA 2M06A 1G90A 4O3YA 3UPGA 2PRNA 4AYEC 3GP6A 2XE2A 3PORA 3LK3A 3VE2A 2ERVA 2OYOA 3TZGA 2W80C 4AYMC 2JN8A 5ADXL 3AA6B 4GCQA 4AUIA 4O3WA 2PFXA 4B61A 3PQSA 4LSEA 3LVYA 4LSIA 4LSFA 2CWQA 4O4UA 1GFOA 4AYDC 3QRCA 4AYID 5PRNA 2PRRA 3K19A 3VY9X 2XTQA 3NSGA 4FT6A 2N2MA 5G26A 2KZ7A 3AA6A 1ORMA 2YPVA 2QTKA 2Q0TA 4FSPA 1YS5A 1MM4A 2F1VA 2FGRA 2XE1A 3BEYA 7PRNA 2XE5A 2ZLDA 4N59A 3WI4A 3SZDA 1MPFA 3LK2B 2MNHA 3A2SX 3SYBA 1ZHZA 4E1TA 3JTYA 4RL9A 3AAAB 1GFMA 6PRNA 1HXUA 4KR4A 2XG6A 3VZUX 4AZLA 3O0EA 2K4TA 3AA1B 4GHBA 3C1LA 3EMNX 4D5UA 1P8CA 1THQA 4E1SA 5IYUA 3RBHA 3LK2A 2O4DA 2Y0HA 2KZ7B 4FOZA 3AAAA 4FZLA 2F1TA 5EE2A 3AA1A 4FSOA 2ES9A 1ZHWA 3POXA 3AA0B 5DL7A 4PUXA 3LK42 1QJ8A 1QJ9A 3HOLA 3VZTX 4G76A 2FGQX 4O3XB 3SY7A 3WI5A 2Y2XA 3POQA 1OSMA 1H6S1 1OPFA 4FRTA 5DIPA 4BUMX 1GFPA 4D64A 3AA0A 3AA7B 4RLCA 3HOEA 1VKEA 5FVNA 1HXTA 2ODJA 4FZMA 4N58A 3V8UA 3HW9A 4D65A 1MM5A 1ME5A 4GCSA 4LSHA 5D5DA 3SY9A 1LW1A 3POUA 4U9CA 3AA7A 1E54A 4C69X 2XMXA 2LFUA 3KVDD 3HWBA 2K0LA 5AFUL 2N2LA 1PHOA 3T20A 2OUWA 4AKRA 4XNKA 2MHLA 4JFBA 2YNKA 1P4TA 4O49A 1BH3A 1GFQA 4XNLA 3SZVA 3T0SA 2XTRA 2JMMA 3PRNA 2KC0A 3D7IA 4AYNA 2IJCA 3T24A 3LK41 4FUVA 2XE3A 3AAEB 2X27X 8PRNA 1GU9A 1BXWA 3DA4A 5ADXK 3SYSA 4JCHA 1ZHTA 2Y7SA 2KXPB 2LHFA 4AKMA 4FZNA 1Q9GA 2GE4A 4GF4A 2ZFGA 1HXXA 5DL8A 2W81C 5GV0A 2KDYA 3AAEA 4AKRB 1IZNB 4Z3TA 2PORA 4GCPA 4O3ZA 4KRAA 1PRNA 4FMSA 2KXPA 5JDPA 4QQ1A 5T5FA 2QEUA 2Y0LA 2J1NA 1ZHYA 1BT9A 2GMYA 2M07A 4RLBA 3C5OA 3QRAA 4FESA 5DL5A 3UAQA 1IZNA 3VY8X 4AFKA 3DA3A 4FRXA 4O4XA 4RJWA 1KNCA 3VE1A 2O4VA 2Y0KA 4RJXA 3G7GA 3VZWX 4G9QA 1GFNA 4KR8A 2OMFA 1QJPA 3LK3B 3FYXA 1ZHXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AFU K;  5ADX K;  3AA0 A;  2KXP B;  3AA7 B;  3LK2 B;  3AAA B;  3AAE A;  3LK3 A;  1IZN B;  3AA1 B;  4AKR B;  2KXP A;  3AA7 A;  3LK2 A;  5ADX L;  3AA6 B;  2KZ7 B;  5AFU L;  3AAA A;  4AKR A;  3AA1 A;  1IZN A;  3AA0 B;  3LK4 2;  2KZ7 A;  3AA6 A;  3LK4 1;  3AAE B;  3LK3 B; 
#chains in the Genus database with same CATH topology
 2AF7 A;  3PQU A;  3LK3 A;  3A0B O;  2W80 C;  2R8A A;  4AUI A;  4O3W A;  3PQS A;  4LSE A;  5GTI O;  4AYI D;  1T1L A;  1T16 A;  2PRR A;  3NSG A;  2N2M A;  1ORM A;  2Q0T A;  5KAF O;  3LK2 B;  3A2S X;  6PRN A;  3JTY A;  3VZU X;  3LK2 A;  4FZL A;  3BRY A;  2F1T A;  4FSO A;  3POX A;  3LK4 2;  3VZT X;  4G76 A;  3SY7 A;  5G3A A;  3POQ A;  1H6S 1;  4BUM X;  5H2F O;  2AXT O;  1HXT A;  4N58 A;  2WVP A;  3SY9 A;  4C69 X;  2XMX A;  3HWB A;  3T20 A;  4JFB A;  4XNL A;  1BH3 A;  5GTH O;  3SZV A;  3PRN A;  2KC0 A;  3D7I A;  3LK4 1;  8PRN A;  4GF4 A;  5DL8 A;  3BRZ A;  3LK3 B;  1IZN B;  4Z3T A;  4KRA A;  3WU2 O;  4QQ1 A;  4PR7 A;  2Y0L A;  2J1N A;  4RLB A;  2M07 A;  1IZN A;  3DA3 A;  4RJX A;  3VZW X;  2R4P A;  4G9Q A;  4KR8 A;  3BS0 A;  2OMF A;  1QJP A;  4D5U A;  1ZHX A;  5AFU K;  5DL6 A;  2J4U P;  5TIS O;  4F4B A;  1Q9F A;  2ERV A;  4FQE A;  4AYM C;  2JN8 A;  5G39 A;  5G38 A;  3AA6 B;  2PFX A;  3LVY A;  4C00 A;  1GFO A;  3K19 A;  3VY9 X;  3AA6 A;  2YPV A;  2QTK A;  1YS5 A;  2XE1 A;  2XE5 A;  3PGU A;  3JCU O;  4E1T A;  3O0E A;  3C1L A;  4E1S A;  3RBH A;  2O4D A;  2Y0H A;  2F1C X;  3A0H O;  3AA0 B;  5DL7 A;  4PUX A;  1OSM A;  1GFP A;  3AA0 A;  3AA7 B;  3HOE A;  1VKE A;  3PF1 A;  2R89 A;  4PJ0 O;  4GCS A;  4LSH A;  4U9C A;  3AA7 A;  2K0L A;  4AKR A;  2MHL A;  3T0S A;  4O49 A;  4UB6 O;  1GU9 A;  3DA4 A;  4JCH A;  3KZI O;  2KXP B;  2LHF A;  1HXX A;  5GV0 A;  2KDY A;  4O3Z A;  2KXP A;  5JDP A;  3DZM A;  5T5F A;  1ZHY A;  1BT9 A;  2GMY A;  3QRA A;  4FES A;  4IL6 O;  3UAQ A;  3PGR A;  4FRX A;  4RJW A;  3DWN A;  3VE1 A;  3G7G A;  1GFN A;  3UU2 A;  5DIK A;  4N75 A;  2M06 A;  1S5L O;  1G90 A;  4AYE C;  3GP6 A;  3VE2 A;  3TZG A;  3NJT A;  4O4U A;  2CWQ A;  4AYD C;  2WJQ A;  2KZ7 A;  4UB8 O;  2F1V A;  2FGR A;  3BEY A;  2ZLD A;  3SZD A;  2MNH A;  4RL9 A;  3AAA B;  1GFM A;  1HXU A;  4KR4 A;  2XG6 A;  4GHB A;  2R4N A;  1THQ A;  5IYU A;  4FOZ A;  3AAA A;  2ES9 A;  3HOL A;  4O3X B;  3WI5 A;  4N74 A;  5E79 O;  4FRT A;  1OPF A;  4RLC A;  5FVN A;  2R4L A;  1MM5 A;  1ME5 A;  5D5D A;  5KAI O;  5AFU L;  2N2L A;  2OUW A;  2YNK A;  2XTR A;  2JMM A;  2X27 X;  3SYS A;  5ADX K;  2Y7S A;  4AKM A;  2ZFG A;  4C4V B;  4AKR B;  4GCP A;  4FMS A;  4C4V A;  3C5O A;  5DL5 A;  4O4X A;  5B5E O;  1KNC A;  4K3C A;  2JQY A;  3T24 A;  2IWW A;  2WJR A;  4G75 A;  4O3Y A;  3UPG A;  2PRN A;  3POR A;  2XE2 A;  2OYO A;  5ADX L;  4GCQ A;  4B61 A;  4LSI A;  4LSF A;  3QRC A;  5PRN A;  3PGS A;  2XTQ A;  4FT6 A;  4FSP A;  1MM4 A;  7PRN A;  4N59 A;  3WI4 A;  1MPF A;  2X9K A;  3SYB A;  1ZHZ A;  4AZL A;  2IWV A;  2K4T A;  3AA1 B;  3EMN X;  1P8C A;  2KZ7 B;  5EE2 A;  3AA1 A;  1ZHW A;  2R88 A;  1QJ8 A;  1QJ9 A;  2FGQ X;  2Y2X A;  2R4O A;  5DIP A;  4D64 A;  2ODJ A;  4FZM A;  3V8U A;  3HW9 A;  4D65 A;  4CTD A;  1LW1 A;  3POU A;  1E54 A;  2LFU A;  3KVD D;  5B66 O;  1PHO A;  4XNK A;  1P4T A;  1GFQ A;  4AYN A;  2IJC A;  4FUV A;  2XE3 A;  3AAE B;  1BXW A;  1ZHT A;  4FZN A;  1Q9G A;  2GE4 A;  2W81 C;  3AAE A;  4K3B A;  3DWO X;  2POR A;  1PRN A;  2QEU A;  3VY8 X;  4AFK A;  2O4V A;  2Y0K A;  5G26 A;  3FYX A; 
#chains in the Genus database with same CATH homology
 5AFU K;  5DL6 A;  2J4U P;  3UU2 A;  2AF7 A;  3PQU A;  4G75 A;  5DIK A;  4F4B A;  1Q9F A;  2M06 A;  1G90 A;  4O3Y A;  3UPG A;  2PRN A;  4AYE C;  3GP6 A;  2XE2 A;  3POR A;  3LK3 A;  3VE2 A;  2ERV A;  2OYO A;  3TZG A;  2W80 C;  4AYM C;  2JN8 A;  5ADX L;  3AA6 B;  4GCQ A;  4AUI A;  4O3W A;  2PFX A;  4B61 A;  3PQS A;  4LSE A;  3LVY A;  4LSI A;  4LSF A;  2CWQ A;  4O4U A;  1GFO A;  4AYD C;  3QRC A;  4AYI D;  5PRN A;  2PRR A;  3K19 A;  3VY9 X;  2XTQ A;  3NSG A;  4FT6 A;  2N2M A;  5G26 A;  2KZ7 A;  3AA6 A;  1ORM A;  2YPV A;  2QTK A;  2Q0T A;  4FSP A;  1YS5 A;  1MM4 A;  2F1V A;  2FGR A;  2XE1 A;  3BEY A;  7PRN A;  2XE5 A;  2ZLD A;  4N59 A;  3WI4 A;  3SZD A;  1MPF A;  3LK2 B;  2MNH A;  3A2S X;  3SYB A;  1ZHZ A;  4E1T A;  3JTY A;  4RL9 A;  3AAA B;  1GFM A;  6PRN A;  1HXU A;  4KR4 A;  2XG6 A;  3VZU X;  4AZL A;  3O0E A;  2K4T A;  3AA1 B;  4GHB A;  3C1L A;  3EMN X;  4D5U A;  1P8C A;  1THQ A;  4E1S A;  5IYU A;  3RBH A;  3LK2 A;  2O4D A;  2Y0H A;  2KZ7 B;  4FOZ A;  3AAA A;  4FZL A;  2F1T A;  5EE2 A;  3AA1 A;  4FSO A;  2ES9 A;  1ZHW A;  3POX A;  3AA0 B;  5DL7 A;  4PUX A;  3LK4 2;  1QJ8 A;  1QJ9 A;  3HOL A;  3VZT X;  4G76 A;  2FGQ X;  4O3X B;  3SY7 A;  3WI5 A;  2Y2X A;  3POQ A;  1OSM A;  1H6S 1;  1OPF A;  4FRT A;  5DIP A;  4BUM X;  1GFP A;  4D64 A;  3AA0 A;  3AA7 B;  4RLC A;  3HOE A;  1VKE A;  5FVN A;  1HXT A;  2ODJ A;  4FZM A;  4N58 A;  3V8U A;  3HW9 A;  4D65 A;  1MM5 A;  1ME5 A;  4GCS A;  4LSH A;  5D5D A;  3SY9 A;  1LW1 A;  3POU A;  4U9C A;  3AA7 A;  1E54 A;  4C69 X;  2XMX A;  2LFU A;  3KVD D;  3HWB A;  2K0L A;  5AFU L;  2N2L A;  1PHO A;  3T20 A;  2OUW A;  4AKR A;  4XNK A;  2MHL A;  4JFB A;  2YNK A;  1P4T A;  4O49 A;  1BH3 A;  1GFQ A;  4XNL A;  3SZV A;  3T0S A;  2XTR A;  2JMM A;  3PRN A;  2KC0 A;  3D7I A;  4AYN A;  2IJC A;  3T24 A;  3LK4 1;  4FUV A;  2XE3 A;  3AAE B;  2X27 X;  8PRN A;  1GU9 A;  1BXW A;  3DA4 A;  5ADX K;  3SYS A;  4JCH A;  1ZHT A;  2Y7S A;  2KXP B;  2LHF A;  4AKM A;  4FZN A;  1Q9G A;  2GE4 A;  4GF4 A;  2ZFG A;  1HXX A;  5DL8 A;  2W81 C;  5GV0 A;  2KDY A;  3AAE A;  4AKR B;  1IZN B;  4Z3T A;  2POR A;  4GCP A;  4O3Z A;  4KRA A;  1PRN A;  4FMS A;  2KXP A;  5JDP A;  4QQ1 A;  5T5F A;  2QEU A;  2Y0L A;  2J1N A;  1ZHY A;  1BT9 A;  2GMY A;  2M07 A;  4RLB A;  3C5O A;  3QRA A;  4FES A;  5DL5 A;  3UAQ A;  1IZN A;  3VY8 X;  4AFK A;  3DA3 A;  4FRX A;  4O4X A;  4RJW A;  1KNC A;  3VE1 A;  2O4V A;  2Y0K A;  4RJX A;  3G7G A;  3VZW X;  4G9Q A;  1GFN A;  4KR8 A;  2OMF A;  1QJP A;  3LK3 B;  3FYX A;  1ZHX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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