3LK3A

Crystal structure of capz bound to the cpi and csi uncapping motifs from carmil
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
270
structure length
266
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDLKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords F-actin-capping protein subunit alpha-1
publication title Structural characterization of a capping protein interaction motif defines a family of actin filament regulators
doi rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 76
structure length 266
sequence length 270
ec nomenclature
pdb deposition date 2010-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3lk3A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3lk3A02
3LK2A 4AKRA 1IZNB 3AAAA 3AA1B 2KXPB 5AFUL 3LK3A 3AA7A 3AA6B 3LK42 5ADXL 3AAEA 3AA0B 2KZ7A 3LK2B 1IZNA 4AKRB 3AAAB 3LK41 2KXPA 3AA6A 3AA1A 3LK3B 3AA7B 3AAEB 3AA0A 5AFUK 5ADXK 2KZ7B
chains in the Genus database with same CATH superfamily
1KNCA 4JCHA 2R89A 5B5EO 1GFNA 3AA6B 4GHBA 2YNKA 3DWNA 2W80C 2Y0KA 1HXXA 4UB6O 4LSEA 2ODJA 2XE5A 5DL7A 5JDPA 1IZNB 4FZLA 3KZIO 2Y2XA 3K19A 4N75A 1OPFA 3PGUA 4FZNA 3AA0B 1OSMA 1E54A 3DA4A 3SZDA 2GE4A 4XNLA 1Q9GA 4G75A 3LVYA 2K4TA 1THQA 2N2MA 4AYEC 2Y7SA 5GV0A 3AAEB 3POUA 1GFOA 4E1TA 2ES9A 3LK2A 3BRZA 4O3XB 4QQ1A 3GP6A 3AAAA 8PRNA 4CTDA 3G7GA 2KDYA 3LK3A 5E79O 5DL8A 2PRRA 2XTRA 2ZFGA 3VZTX 2WJQA 2ZLDA 1Q9FA 4AYDC 4E1SA 2KXPA 3HW9A 2Y0LA 3C5OA 3PQSA 2XG6A 2YPVA 2JQYA 4K3CA 1QJPA 1T16A 3T20A 4JFBA 4C00A 4FT6A 1ORMA 2Y0HA 2R4LA 1PRNA 2KZ7A 4AKRB 2R88A 2WJRA 4C4VA 7PRNA 4U9CA 4AZLA 2MHLA 3VY8X 3JCUO 3RBHA 3SYSA 3NSGA 2XMXA 3HOLA 5TISO 1MM4A 2Q0TA 4G76A 4O4XA 3AA6A 3BRYA 3AA7B 6PRNA 4AYID 4AFKA 3POXA 3POQA 4N74A 4N59A 4AKMA 2K0LA 3AA1B 5G26A 4O3ZA 2F1CX 4RJWA 3WI4A 1IZNA 4RL9A 3SY9A 1QJ8A 3VE1A 4C69X 2LHFA 4LSIA 3EMNX 3T24A 4Z3TA 4RLBA 5FVNA 3AA0A 3UAQA 2FGRA 4GCQA 2IWWA 4G9QA 3WI5A 4LSFA 3UU2A 2IJCA 1ME5A 4FUVA 4FQEA 3VE2A 2XTQA 4XNKA 1ZHYA 2O4DA 3SYBA 3SY7A 3PORA 2PORA 5DIPA 1GFMA 1VKEA 3BEYA 1BXWA 2PRNA 2R8AA 3C1LA 5AFUL 1BH3A 1ZHZA 2J1NA 5ADXL 3DZMA 1MPFA 4PJ0O 2O4VA 5PRNA 2KC0A 5G38A 5G3AA 4IL6O 4BUMX 3LK41 4AUIA 2XE2A 3PGSA 2JN8A 3TZGA 2X9KA 4LSHA 4FRTA 2M06A 4AKRA 4FMSA 1T1LA 2PFXA 5DL5A 2X27X 3LK2B 4D64A 2J4UP 1LW1A 3DWOX 3V8UA 3FYXA 1GFPA 3D7IA 1P4TA 1HXUA 4D65A 4FESA 4FSOA 3PQUA 4FRXA 3AA7A 2M07A 2JMMA 4RJXA 3QRAA 2CWQA 2OUWA 5KAFO 4FSPA 3O0EA 3A2SX 3QRCA 5DIKA 2KZ7B 4K3BA 2QTKA 2AXTO 5T5FA 4GCPA 2LFUA 3T0SA 5KAIO 5H2FO 4FZMA 1ZHWA 3A0HO 4PR7A 2XE1A 5G39A 1HXTA 3LK42 1QJ9A 4B61A 3AAEA 3A0BO 1S5LO 2R4PA 3PRNA 4D5UA 4UB8O 1P8CA 1G90A 1ZHTA 1H6S1 2WVPA 2IWVA 4O4UA 4AYNA 3PGRA 4GCSA 2FGQX 4AYMC 1PHOA 2R4NA 2OMFA 4KR4A 2ERVA 1GFQA 2F1TA 4F4BA 1YS5A 2OYOA 1GU9A 4RLCA 4GF4A 2QEUA 5DL6A 2GMYA 3AAAB 1ZHXA 3PF1A 3LK3B 3VZWX 2AF7A 5AFUK 5ADXK 5EE2A 2W81C 3HWBA 5B66O 4O49A 2KXPB 4N58A 5D5DA 4FOZA 2R4OA 5GTHO 3NJTA 3AA1A 2MNHA 3SZVA 5GTIO 3KVDD 3UPGA 1MM5A 3BS0A 4KRAA 1BT9A 4C4VB 3HOEA 4O3YA 3DA3A 2N2LA 5IYUA 2XE3A 2F1VA 3VY9X 4PUXA 4O3WA 3VZUX 4KR8A 3WU2O 3JTYA
chains in the Genus database with same CATH topology
1KNCA 4JCHA 2MHLA 4AKRA 4O4UA 3VY8X 4AYNA 4FMSA 3RBHA 3SYSA 3NSGA 2XMXA 3HOLA 4GCSA 2PFXA 2FGQX 1GFNA 3AA6B 4GHBA 4AYMC 2YNKA 5DL5A 1MM4A 2Q0TA 2X27X 2W80C 2Y0KA 3LK2B 1PHOA 4D64A 2J4UP 1LW1A 1HXXA 4G76A 2OMFA 3V8UA 4O4XA 4LSEA 3FYXA 4KR4A 1GFPA 3AA6A 2ERVA 4AZLA 3D7IA 1P4TA 3AA7B 1HXUA 1GFQA 6PRNA 4D65A 2ODJA 2F1TA 3JTYA 4AYID 4AFKA 3POXA 2XE5A 3POQA 4F4BA 1YS5A 4N59A 5DL7A 4FESA 5JDPA 1IZNB 4FZLA 4AKMA 4FSOA 2K0LA 2Y2XA 2OYOA 1GU9A 3PQUA 3AA1B 3K19A 4FRXA 1OPFA 3AA7A 4RLCA 4FZNA 2M07A 5G26A 3AA0B 4O3ZA 1OSMA 2JMMA 4RJWA 1E54A 4GF4A 3WI4A 3DA4A 4RJXA 2GE4A 1IZNA 4XNLA 3SZDA 4RL9A 2QEUA 3SY9A 1QJ8A 1Q9GA 4G75A 3VE1A 4C69X 3LVYA 2K4TA 2LHFA 3QRAA 3EMNX 1THQA 2CWQA 2GMYA 2OUWA 2N2MA 3AAAB 5DL6A 1ZHXA 3T24A 4Z3TA 4RLBA 4AYEC 4LSIA 3LK3B 2Y7SA 4FSPA 3AAEB 3O0EA 5FVNA 5GV0A 3AA0A 3A2SX 3QRCA 2AF7A 3VZWX 3POUA 3UAQA 1GFOA 5AFUK 5ADXK 2FGRA 5DIKA 2KZ7B 5EE2A 4E1TA 2ES9A 2QTKA 3LK2A 4GCQA 4G9QA 4O3XB 5T5FA 2W81C 4QQ1A 3WI5A 4GCPA 3GP6A 3AAAA 4LSFA 3UU2A 2LFUA 3HWBA 3G7GA 8PRNA 4O49A 2KDYA 2KXPB 4N58A 3LK3A 5D5DA 2IJCA 5DL8A 1ME5A 4FUVA 2PRRA 4FOZA 2XTRA 2ZFGA 3VZTX 2ZLDA 3T0SA 1Q9FA 4AYDC 3VE2A 2XTQA 4FZMA 4XNKA 4E1SA 1ZHWA 1ZHYA 2O4DA 2KXPA 3HW9A 3SYBA 3AA1A 2MNHA 2Y0LA 3C5OA 3SY7A 3SZVA 3PORA 2PORA 3KVDD 3UPGA 3PQSA 5DIPA 1GFMA 2XE1A 2XG6A 1VKEA 2YPVA 3BEYA 1MM5A 1QJPA 1BXWA 2PRNA 4JFBA 3T20A 3C1LA 4KRAA 1HXTA 5AFUL 1BH3A 1BT9A 1ZHZA 2J1NA 3LK42 4FT6A 1ORMA 1QJ9A 5ADXL 4B61A 3HOEA 4O3YA 3AAEA 1MPFA 3DA3A 2Y0HA 2O4VA 5PRNA 2N2LA 1PRNA 2KC0A 5IYUA 2KZ7A 3PRNA 4BUMX 4D5UA 4AKRB 2XE3A 2F1VA 1P8CA 1G90A 3LK41 4AUIA 2XE2A 3VY9X 4PUXA 1ZHTA 4O3WA 1H6S1 2JN8A 3VZUX 3TZGA 4LSHA 4KR8A 7PRNA 4U9CA 4FRTA 2M06A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LK2 A;  4AKR A;  1IZN B;  3AAA A;  3AA1 B;  2KXP B;  5AFU L;  3LK3 A;  3AA7 A;  3AA6 B;  3LK4 2;  5ADX L;  3AAE A;  3AA0 B;  2KZ7 A;  3LK2 B;  1IZN A;  4AKR B;  3AAA B;  3LK4 1;  2KXP A;  3AA6 A;  3AA1 A;  3LK3 B;  3AA7 B;  3AAE B;  3AA0 A;  5AFU K;  5ADX K;  2KZ7 B; 
#chains in the Genus database with same CATH topology
 1KNC A;  4JCH A;  2R89 A;  5B5E O;  1GFN A;  3AA6 B;  4GHB A;  2YNK A;  3DWN A;  2W80 C;  2Y0K A;  1HXX A;  4UB6 O;  4LSE A;  2ODJ A;  2XE5 A;  5DL7 A;  5JDP A;  1IZN B;  4FZL A;  3KZI O;  2Y2X A;  3K19 A;  4N75 A;  1OPF A;  3PGU A;  4FZN A;  3AA0 B;  1OSM A;  1E54 A;  3DA4 A;  3SZD A;  2GE4 A;  4XNL A;  1Q9G A;  4G75 A;  3LVY A;  2K4T A;  1THQ A;  2N2M A;  4AYE C;  2Y7S A;  5GV0 A;  3AAE B;  3POU A;  1GFO A;  4E1T A;  2ES9 A;  3LK2 A;  3BRZ A;  4O3X B;  4QQ1 A;  3GP6 A;  3AAA A;  8PRN A;  4CTD A;  3G7G A;  2KDY A;  3LK3 A;  5E79 O;  5DL8 A;  2PRR A;  2XTR A;  2ZFG A;  3VZT X;  2WJQ A;  2ZLD A;  1Q9F A;  4AYD C;  4E1S A;  2KXP A;  3HW9 A;  2Y0L A;  3C5O A;  3PQS A;  2XG6 A;  2YPV A;  2JQY A;  4K3C A;  1QJP A;  1T16 A;  3T20 A;  4JFB A;  4C00 A;  4FT6 A;  1ORM A;  2Y0H A;  2R4L A;  1PRN A;  2KZ7 A;  4AKR B;  2R88 A;  2WJR A;  4C4V A;  7PRN A;  4U9C A;  4AZL A;  2MHL A;  3VY8 X;  3JCU O;  3RBH A;  3SYS A;  3NSG A;  2XMX A;  3HOL A;  5TIS O;  1MM4 A;  2Q0T A;  4G76 A;  4O4X A;  3AA6 A;  3BRY A;  3AA7 B;  6PRN A;  4AYI D;  4AFK A;  3POX A;  3POQ A;  4N74 A;  4N59 A;  4AKM A;  2K0L A;  3AA1 B;  5G26 A;  4O3Z A;  2F1C X;  4RJW A;  3WI4 A;  1IZN A;  4RL9 A;  3SY9 A;  1QJ8 A;  3VE1 A;  4C69 X;  2LHF A;  4LSI A;  3EMN X;  3T24 A;  4Z3T A;  4RLB A;  5FVN A;  3AA0 A;  3UAQ A;  2FGR A;  4GCQ A;  2IWW A;  4G9Q A;  3WI5 A;  4LSF A;  3UU2 A;  2IJC A;  1ME5 A;  4FUV A;  4FQE A;  3VE2 A;  2XTQ A;  4XNK A;  1ZHY A;  2O4D A;  3SYB A;  3SY7 A;  3POR A;  2POR A;  5DIP A;  1GFM A;  1VKE A;  3BEY A;  1BXW A;  2PRN A;  2R8A A;  3C1L A;  5AFU L;  1BH3 A;  1ZHZ A;  2J1N A;  5ADX L;  3DZM A;  1MPF A;  4PJ0 O;  2O4V A;  5PRN A;  2KC0 A;  5G38 A;  5G3A A;  4IL6 O;  4BUM X;  3LK4 1;  4AUI A;  2XE2 A;  3PGS A;  2JN8 A;  3TZG A;  2X9K A;  4LSH A;  4FRT A;  2M06 A;  4AKR A;  4FMS A;  1T1L A;  2PFX A;  5DL5 A;  2X27 X;  3LK2 B;  4D64 A;  2J4U P;  1LW1 A;  3DWO X;  3V8U A;  3FYX A;  1GFP A;  3D7I A;  1P4T A;  1HXU A;  4D65 A;  4FES A;  4FSO A;  3PQU A;  4FRX A;  3AA7 A;  2M07 A;  2JMM A;  4RJX A;  3QRA A;  2CWQ A;  2OUW A;  5KAF O;  4FSP A;  3O0E A;  3A2S X;  3QRC A;  5DIK A;  2KZ7 B;  4K3B A;  2QTK A;  2AXT O;  5T5F A;  4GCP A;  2LFU A;  3T0S A;  5KAI O;  5H2F O;  4FZM A;  1ZHW A;  3A0H O;  4PR7 A;  2XE1 A;  5G39 A;  1HXT A;  3LK4 2;  1QJ9 A;  4B61 A;  3AAE A;  3A0B O;  1S5L O;  2R4P A;  3PRN A;  4D5U A;  4UB8 O;  1P8C A;  1G90 A;  1ZHT A;  1H6S 1;  2WVP A;  2IWV A;  4O4U A;  4AYN A;  3PGR A;  4GCS A;  2FGQ X;  4AYM C;  1PHO A;  2R4N A;  2OMF A;  4KR4 A;  2ERV A;  1GFQ A;  2F1T A;  4F4B A;  1YS5 A;  2OYO A;  1GU9 A;  4RLC A;  4GF4 A;  2QEU A;  5DL6 A;  2GMY A;  3AAA B;  1ZHX A;  3PF1 A;  3LK3 B;  3VZW X;  2AF7 A;  5AFU K;  5ADX K;  5EE2 A;  2W81 C;  3HWB A;  5B66 O;  4O49 A;  2KXP B;  4N58 A;  5D5D A;  4FOZ A;  2R4O A;  5GTH O;  3NJT A;  3AA1 A;  2MNH A;  3SZV A;  5GTI O;  3KVD D;  3UPG A;  1MM5 A;  3BS0 A;  4KRA A;  1BT9 A;  4C4V B;  3HOE A;  4O3Y A;  3DA3 A;  2N2L A;  5IYU A;  2XE3 A;  2F1V A;  3VY9 X;  4PUX A;  4O3W A;  3VZU X;  4KR8 A;  3WU2 O;  3JTY A; 
#chains in the Genus database with same CATH homology
 1KNC A;  4JCH A;  2MHL A;  4AKR A;  4O4U A;  3VY8 X;  4AYN A;  4FMS A;  3RBH A;  3SYS A;  3NSG A;  2XMX A;  3HOL A;  4GCS A;  2PFX A;  2FGQ X;  1GFN A;  3AA6 B;  4GHB A;  4AYM C;  2YNK A;  5DL5 A;  1MM4 A;  2Q0T A;  2X27 X;  2W80 C;  2Y0K A;  3LK2 B;  1PHO A;  4D64 A;  2J4U P;  1LW1 A;  1HXX A;  4G76 A;  2OMF A;  3V8U A;  4O4X A;  4LSE A;  3FYX A;  4KR4 A;  1GFP A;  3AA6 A;  2ERV A;  4AZL A;  3D7I A;  1P4T A;  3AA7 B;  1HXU A;  1GFQ A;  6PRN A;  4D65 A;  2ODJ A;  2F1T A;  3JTY A;  4AYI D;  4AFK A;  3POX A;  2XE5 A;  3POQ A;  4F4B A;  1YS5 A;  4N59 A;  5DL7 A;  4FES A;  5JDP A;  1IZN B;  4FZL A;  4AKM A;  4FSO A;  2K0L A;  2Y2X A;  2OYO A;  1GU9 A;  3PQU A;  3AA1 B;  3K19 A;  4FRX A;  1OPF A;  3AA7 A;  4RLC A;  4FZN A;  2M07 A;  5G26 A;  3AA0 B;  4O3Z A;  1OSM A;  2JMM A;  4RJW A;  1E54 A;  4GF4 A;  3WI4 A;  3DA4 A;  4RJX A;  2GE4 A;  1IZN A;  4XNL A;  3SZD A;  4RL9 A;  2QEU A;  3SY9 A;  1QJ8 A;  1Q9G A;  4G75 A;  3VE1 A;  4C69 X;  3LVY A;  2K4T A;  2LHF A;  3QRA A;  3EMN X;  1THQ A;  2CWQ A;  2GMY A;  2OUW A;  2N2M A;  3AAA B;  5DL6 A;  1ZHX A;  3T24 A;  4Z3T A;  4RLB A;  4AYE C;  4LSI A;  3LK3 B;  2Y7S A;  4FSP A;  3AAE B;  3O0E A;  5FVN A;  5GV0 A;  3AA0 A;  3A2S X;  3QRC A;  2AF7 A;  3VZW X;  3POU A;  3UAQ A;  1GFO A;  5AFU K;  5ADX K;  2FGR A;  5DIK A;  2KZ7 B;  5EE2 A;  4E1T A;  2ES9 A;  2QTK A;  3LK2 A;  4GCQ A;  4G9Q A;  4O3X B;  5T5F A;  2W81 C;  4QQ1 A;  3WI5 A;  4GCP A;  3GP6 A;  3AAA A;  4LSF A;  3UU2 A;  2LFU A;  3HWB A;  3G7G A;  8PRN A;  4O49 A;  2KDY A;  2KXP B;  4N58 A;  3LK3 A;  5D5D A;  2IJC A;  5DL8 A;  1ME5 A;  4FUV A;  2PRR A;  4FOZ A;  2XTR A;  2ZFG A;  3VZT X;  2ZLD A;  3T0S A;  1Q9F A;  4AYD C;  3VE2 A;  2XTQ A;  4FZM A;  4XNK A;  4E1S A;  1ZHW A;  1ZHY A;  2O4D A;  2KXP A;  3HW9 A;  3SYB A;  3AA1 A;  2MNH A;  2Y0L A;  3C5O A;  3SY7 A;  3SZV A;  3POR A;  2POR A;  3KVD D;  3UPG A;  3PQS A;  5DIP A;  1GFM A;  2XE1 A;  2XG6 A;  1VKE A;  2YPV A;  3BEY A;  1MM5 A;  1QJP A;  1BXW A;  2PRN A;  4JFB A;  3T20 A;  3C1L A;  4KRA A;  1HXT A;  5AFU L;  1BH3 A;  1BT9 A;  1ZHZ A;  2J1N A;  3LK4 2;  4FT6 A;  1ORM A;  1QJ9 A;  5ADX L;  4B61 A;  3HOE A;  4O3Y A;  3AAE A;  1MPF A;  3DA3 A;  2Y0H A;  2O4V A;  5PRN A;  2N2L A;  1PRN A;  2KC0 A;  5IYU A;  2KZ7 A;  3PRN A;  4BUM X;  4D5U A;  4AKR B;  2XE3 A;  2F1V A;  1P8C A;  1G90 A;  3LK4 1;  4AUI A;  2XE2 A;  3VY9 X;  4PUX A;  1ZHT A;  4O3W A;  1H6S 1;  2JN8 A;  3VZU X;  3TZG A;  4LSH A;  4KR8 A;  7PRN A;  4U9C A;  4FRT A;  2M06 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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