2IJCA

Structure of a conserved protein of unknown function pa0269 from pseudomonas aeruginosa
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
143
structure length
143
Chain Sequence
TTRLEWAKASPDAYAAMLGLEKALAKAGLERPLIELVYLRTSQINGCAYCVNMHANDARKAGETEQRLQALCVWQETPYFTPRERAALAWTEQLARLSQGALPHGLLDELREHFDDKEIAELTLAVSAINAWNRFGVGMGMQP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Hypothetical protein
publication title The Crystal Structure of a Conserved Hypothetical Protein PA0269 from Pseudomonas aeruginosa
rcsb
source organism Pseudomonas aeruginosa pao1
molecule tags Structural genomics, unknown function
total genus 48
structure length 143
sequence length 143
chains with identical sequence B, C, D, E, F, G, H, I
ec nomenclature
pdb deposition date 2006-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2ijcA00
1KNCA 1VKEA 2PRRA 3D7IA 2OYOA 1ME5A 4G9QA 2Q0TA 2CWQA 2OUWA 2O4DA 1LW1A 2IJCA 3BEYA 2GMYA 5DIPA 1GU9A 3C1LA 5DIKA 1P8CA 2PFXA 3LVYA 2QEUA 2AF7A
chains in the Genus database with same CATH superfamily
1KNCA 2JN8A 3AAAA 1VKEA 2PRRA 2KXPA 3AAEA 3D7IA 2OYOA 1ME5A 4G9QA 2Q0TA 2CWQA 3AA0A 3LK2A 2OUWA 5AFUK 2O4DA 1IZNA 3AA1A 3LK41 1LW1A 2IJCA 3BEYA 2GMYA 2ES9A 5ADXK 3AA7A 5DIPA 2KZ7A 3AA6A 1GU9A 3C1LA 5DIKA 4AKRA 1P8CA 2PFXA 3LVYA 3LK3A 2QEUA 2AF7A
chains in the Genus database with same CATH topology
1KNCA 2JN8A 3AAAA 1VKEA 2PRRA 2KXPA 3AAEA 3D7IA 2OYOA 1ME5A 4G9QA 2Q0TA 2CWQA 3AA0A 3LK2A 2OUWA 5AFUK 2O4DA 1IZNA 3AA1A 3LK41 1LW1A 2IJCA 3BEYA 2GMYA 2ES9A 5ADXK 3AA7A 5DIPA 2KZ7A 3AA6A 1GU9A 3C1LA 5DIKA 4AKRA 1P8CA 2PFXA 3LVYA 3LK3A 2QEUA 2AF7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KNC A;  1VKE A;  2PRR A;  3D7I A;  2OYO A;  1ME5 A;  4G9Q A;  2Q0T A;  2CWQ A;  2OUW A;  2O4D A;  1LW1 A;  2IJC A;  3BEY A;  2GMY A;  5DIP A;  1GU9 A;  3C1L A;  5DIK A;  1P8C A;  2PFX A;  3LVY A;  2QEU A;  2AF7 A; 
#chains in the Genus database with same CATH topology
 1KNC A;  2JN8 A;  3AAA A;  1VKE A;  2PRR A;  2KXP A;  3AAE A;  3D7I A;  2OYO A;  1ME5 A;  4G9Q A;  2Q0T A;  2CWQ A;  3AA0 A;  3LK2 A;  2OUW A;  5AFU K;  2O4D A;  1IZN A;  3AA1 A;  3LK4 1;  1LW1 A;  2IJC A;  3BEY A;  2GMY A;  2ES9 A;  5ADX K;  3AA7 A;  5DIP A;  2KZ7 A;  3AA6 A;  1GU9 A;  3C1L A;  5DIK A;  4AKR A;  1P8C A;  2PFX A;  3LVY A;  3LK3 A;  2QEU A;  2AF7 A; 
#chains in the Genus database with same CATH homology
 1KNC A;  2JN8 A;  3AAA A;  1VKE A;  2PRR A;  2KXP A;  3AAE A;  3D7I A;  2OYO A;  1ME5 A;  4G9Q A;  2Q0T A;  2CWQ A;  3AA0 A;  3LK2 A;  2OUW A;  5AFU K;  2O4D A;  1IZN A;  3AA1 A;  3LK4 1;  1LW1 A;  2IJC A;  3BEY A;  2GMY A;  2ES9 A;  5ADX K;  3AA7 A;  5DIP A;  2KZ7 A;  3AA6 A;  1GU9 A;  3C1L A;  5DIK A;  4AKR A;  1P8C A;  2PFX A;  3LVY A;  3LK3 A;  2QEU A;  2AF7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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