1IZNA

Crystal structure of actin filament capping protein capz
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
275
structure length
275
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of CapZ: structural basis for actin filament barbed end capping
pubmed doi rcsb
source organism Gallus gallus
molecule tags Protein binding
molecule keywords CapZ alpha-1 subunit
total genus 72
structure length 275
sequence length 275
chains with identical sequence C
ec nomenclature
pdb deposition date 2002-10-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 1iznA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 1iznA02
3LK2B 3AAAA 5ADXL 3AA6B 3LK2A 3AA1A 2KZ7B 3LK42 5ADXK 2KXPA 3AA0A 4AKRA 3AA0B 3AAEA 3LK41 5AFUK 3AAAB 3AAEB 3AA7B 3AA1B 3LK3A 5AFUL 1IZNA 3AA6A 4AKRB 2KXPB 3AA7A 2KZ7A 1IZNB 3LK3B
chains in the Genus database with same CATH superfamily
2YPVA 4O4XA 3HOEA 3RBHA 4O3XB 3VZTX 4FSPA 1GFPA 1KNCA 5H2FO 4AYID 3AA1A 3DWOX 2XE5A 4AZLA 2F1CX 4GCPA 2ERVA 2JN8A 4QQ1A 1BH3A 4FQEA 4AYDC 4LSIA 5JDPA 1YS5A 3UPGA 4LSFA 2JMMA 2PRNA 5E79O 4AYEC 1ORMA 4LSEA 4N74A 2QEUA 2XE2A 4PR7A 2J4UP 3HOLA 3SY9A 1ZHWA 1ZHXA 1QJ8A 2K0LA 3DA4A 3K19A 4RL9A 5G38A 3WI5A 4F4BA 5GV0A 3VY8X 1ME5A 4GCSA 5DL8A 2AF7A 2GE4A 2Q0TA 3AA6A 7PRNA 4FSOA 3BRYA 3GP6A 2KXPB 4C69X 5TISO 4LSHA 1HXUA 2R4NA 3PGUA 2ODJA 4AKRA 4JFBA 3BRZA 4FOZA 2R89A 3POUA 3SZVA 3WI4A 3NJTA 5G3AA 1BXWA 2LHFA 2IJCA 4N59A 3VE1A 3DA3A 4E1SA 1PRNA 2YNKA 4O3ZA 2N2MA 3FYXA 2XMXA 3JCUO 4Z3TA 3UU2A 4D64A 5B5EO 5KAIO 1ZHZA 5ADXK 1ZHTA 4RLCA 3SZDA 2AXTO 3EMNX 2R4LA 4XNKA 2XTQA 3AA0B 3AAEA 3C5OA 3O0EA 3QRAA 1BT9A 1LW1A 3QRCA 4FT6A 4GCQA 4AYMC 4AYNA 3PQUA 4FRXA 3T20A 2W81C 3LK3A 1GFNA 4G75A 4O49A 1PHOA 2W80C 1Q9GA 2KC0A 2XTRA 3DZMA 3TZGA 5AFUL 4FRTA 2IWVA 4C4VA 5DL5A 4N58A 4FUVA 4XNLA 2WJRA 2R4PA 4B61A 4JCHA 1T16A 2N2LA 5KAFO 1MM5A 3PQSA 5IYUA 5DL7A 1GU9A 4KR8A 3WU2O 3VE2A 4PUXA 3LK2B 2IWWA 5DIKA 3PRNA 3HW9A 1HXTA 2OYOA 3HWBA 5GTHO 5PRNA 1GFOA 5DL6A 4FESA 3LK42 2X27X 2F1TA 3PGRA 1OSMA 4FZMA 2KXPA 4BUMX 2MHLA 8PRNA 2QTKA 2OMFA 2CWQA 3A0HO 2O4DA 3AA0A 2X9KA 4FZNA 4N75A 2M06A 2GMYA 5D5DA 2M07A 3UAQA 1GFQA 4O3YA 3LK41 1OPFA 4KR4A 3KZIO 2WVPA 3AAAB 3AAEB 5GTIO 2PFXA 1H6S1 2KDYA 2Y2XA 3AA1B 5EE2A 1MPFA 6PRNA 1G90A 4RJXA 3D7IA 2R8AA 4FZLA 4D5UA 3BEYA 4UB6O 1GFMA 2Y0KA 3VZWX 3POXA 4AKRB 4AFKA 4UB8O 3PORA 2PRRA 2K4TA 3BS0A 5FVNA 2ES9A 1MM4A 2KZ7A 1ZHYA 2F1VA 4AKMA 5B66O 1P8CA 4G76A 2PORA 4PJ0O 3LK3B 3V8UA 3LVYA 2O4VA 2ZLDA 3AAAA 1HXXA 4IL6O 4G9QA 4K3CA 4K3BA 4U9CA 3AA6B 3LK2A 3SY7A 5ADXL 2R4OA 4D65A 5T5FA 2Y0LA 2KZ7B 3PGSA 4FMSA 2JQYA 4O4UA 4GF4A 4RJWA 3T0SA 2WJQA 3POQA 5DIPA 1THQA 3KVDD 1QJPA 2J1NA 4RLBA 5AFUK 1QJ9A 3NSGA 2R88A 3T24A 3AA7B 3G7GA 4AUIA 4CTDA 1S5LO 4C4VB 3JTYA 2Y0HA 2Y7SA 4O3WA 5G26A 4E1TA 1Q9FA 2XG6A 2FGQX 2ZFGA 2FGRA 3SYBA 3C1LA 3VY9X 1E54A 4GHBA 1VKEA 3PF1A 3SYSA 1IZNA 2LFUA 2XE1A 3AA7A 3A0BO 3VZUX 5G39A 3A2SX 1T1LA 2XE3A 2OUWA 1IZNB 4C00A 3DWNA 4KRAA 1P4TA 2MNHA
chains in the Genus database with same CATH topology
2YPVA 4O4XA 3HOEA 3RBHA 4O3XB 3VZTX 4FSPA 1GFPA 1KNCA 4AYID 3AA1A 2XE5A 4AZLA 4GCPA 2ERVA 2JN8A 4QQ1A 1BH3A 4AYDC 4LSIA 5JDPA 1YS5A 3UPGA 4LSFA 2JMMA 2PRNA 4AYEC 1ORMA 4LSEA 2QEUA 2XE2A 2J4UP 3HOLA 3SY9A 1ZHWA 1ZHXA 1QJ8A 2K0LA 3DA4A 3K19A 4RL9A 3WI5A 4F4BA 5GV0A 3VY8X 1ME5A 4GCSA 5DL8A 2AF7A 2GE4A 2Q0TA 3AA6A 7PRNA 4FSOA 3GP6A 2KXPB 4C69X 4LSHA 1HXUA 2ODJA 4AKRA 4JFBA 4FOZA 3POUA 3SZVA 3WI4A 1BXWA 2LHFA 2IJCA 4N59A 3VE1A 3DA3A 4E1SA 1PRNA 2YNKA 4O3ZA 2N2MA 3FYXA 2XMXA 4Z3TA 3UU2A 4D64A 1ZHZA 5ADXK 1ZHTA 4RLCA 3SZDA 3EMNX 4XNKA 2XTQA 3AA0B 3AAEA 3C5OA 3O0EA 3QRAA 1BT9A 1LW1A 3QRCA 4FT6A 4AYMC 4AYNA 3PQUA 4FRXA 3T20A 2W81C 3LK3A 1GFNA 4G75A 4O49A 1PHOA 2W80C 1Q9GA 2KC0A 2XTRA 3TZGA 5AFUL 4FRTA 5DL5A 4N58A 4FUVA 4XNLA 4B61A 4JCHA 2N2LA 1MM5A 3PQSA 5IYUA 5DL7A 1GU9A 4KR8A 3VE2A 4PUXA 3LK2B 5DIKA 3PRNA 3HW9A 1HXTA 2OYOA 3HWBA 1GFOA 5DL6A 4FESA 3LK42 2X27X 2F1TA 4BUMX 1OSMA 4FZMA 2KXPA 2MHLA 8PRNA 2QTKA 2OMFA 2CWQA 4FZNA 2O4DA 3AA0A 5PRNA 5D5DA 2M06A 2GMYA 3UAQA 2M07A 1GFQA 4O3YA 3LK41 1OPFA 4KR4A 3AAAB 3AAEB 2PFXA 1H6S1 2KDYA 2Y2XA 3AA1B 5EE2A 1MPFA 6PRNA 1G90A 4RJXA 3D7IA 4FZLA 4D5UA 3BEYA 3VZWX 1GFMA 2Y0KA 3POXA 4AKRB 4AFKA 3PORA 2PRRA 2K4TA 5FVNA 2ES9A 1MM4A 2KZ7A 1ZHYA 2F1VA 4AKMA 1P8CA 4G76A 2PORA 3LK3B 3V8UA 3LVYA 2O4VA 2ZLDA 3AAAA 1HXXA 4U9CA 4G9QA 3SY7A 5ADXL 3AA6B 3LK2A 4D65A 5T5FA 2Y0LA 2KZ7B 4FMSA 4O4UA 4GF4A 4RJWA 3T0SA 3POQA 5DIPA 1THQA 3KVDD 1QJPA 2J1NA 4RLBA 5AFUK 1QJ9A 3NSGA 3T24A 4AUIA 3AA7B 3G7GA 3JTYA 2Y0HA 2Y7SA 4O3WA 5G26A 4E1TA 1Q9FA 2XG6A 2FGQX 2ZFGA 2FGRA 3SYBA 3C1LA 3VY9X 1E54A 4GHBA 1VKEA 3SYSA 1IZNA 2LFUA 2XE1A 3AA7A 3VZUX 3A2SX 2XE3A 2OUWA 1IZNB 4GCQA 4KRAA 1P4TA 2MNHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LK2 B;  3AAA A;  5ADX L;  3AA6 B;  3LK2 A;  3AA1 A;  2KZ7 B;  3LK4 2;  5ADX K;  2KXP A;  3AA0 A;  4AKR A;  3AA0 B;  3AAE A;  3LK4 1;  5AFU K;  3AAA B;  3AAE B;  3AA7 B;  3AA1 B;  3LK3 A;  5AFU L;  1IZN A;  3AA6 A;  4AKR B;  2KXP B;  3AA7 A;  2KZ7 A;  1IZN B;  3LK3 B; 
#chains in the Genus database with same CATH topology
 2YPV A;  4O4X A;  3HOE A;  3RBH A;  4O3X B;  3VZT X;  4FSP A;  1GFP A;  1KNC A;  5H2F O;  4AYI D;  3AA1 A;  3DWO X;  2XE5 A;  4AZL A;  2F1C X;  4GCP A;  2ERV A;  2JN8 A;  4QQ1 A;  1BH3 A;  4FQE A;  4AYD C;  4LSI A;  5JDP A;  1YS5 A;  3UPG A;  4LSF A;  2JMM A;  2PRN A;  5E79 O;  4AYE C;  1ORM A;  4LSE A;  4N74 A;  2QEU A;  2XE2 A;  4PR7 A;  2J4U P;  3HOL A;  3SY9 A;  1ZHW A;  1ZHX A;  1QJ8 A;  2K0L A;  3DA4 A;  3K19 A;  4RL9 A;  5G38 A;  3WI5 A;  4F4B A;  5GV0 A;  3VY8 X;  1ME5 A;  4GCS A;  5DL8 A;  2AF7 A;  2GE4 A;  2Q0T A;  3AA6 A;  7PRN A;  4FSO A;  3BRY A;  3GP6 A;  2KXP B;  4C69 X;  5TIS O;  4LSH A;  1HXU A;  2R4N A;  3PGU A;  2ODJ A;  4AKR A;  4JFB A;  3BRZ A;  4FOZ A;  2R89 A;  3POU A;  3SZV A;  3WI4 A;  3NJT A;  5G3A A;  1BXW A;  2LHF A;  2IJC A;  4N59 A;  3VE1 A;  3DA3 A;  4E1S A;  1PRN A;  2YNK A;  4O3Z A;  2N2M A;  3FYX A;  2XMX A;  3JCU O;  4Z3T A;  3UU2 A;  4D64 A;  5B5E O;  5KAI O;  1ZHZ A;  5ADX K;  1ZHT A;  4RLC A;  3SZD A;  2AXT O;  3EMN X;  2R4L A;  4XNK A;  2XTQ A;  3AA0 B;  3AAE A;  3C5O A;  3O0E A;  3QRA A;  1BT9 A;  1LW1 A;  3QRC A;  4FT6 A;  4GCQ A;  4AYM C;  4AYN A;  3PQU A;  4FRX A;  3T20 A;  2W81 C;  3LK3 A;  1GFN A;  4G75 A;  4O49 A;  1PHO A;  2W80 C;  1Q9G A;  2KC0 A;  2XTR A;  3DZM A;  3TZG A;  5AFU L;  4FRT A;  2IWV A;  4C4V A;  5DL5 A;  4N58 A;  4FUV A;  4XNL A;  2WJR A;  2R4P A;  4B61 A;  4JCH A;  1T16 A;  2N2L A;  5KAF O;  1MM5 A;  3PQS A;  5IYU A;  5DL7 A;  1GU9 A;  4KR8 A;  3WU2 O;  3VE2 A;  4PUX A;  3LK2 B;  2IWW A;  5DIK A;  3PRN A;  3HW9 A;  1HXT A;  2OYO A;  3HWB A;  5GTH O;  5PRN A;  1GFO A;  5DL6 A;  4FES A;  3LK4 2;  2X27 X;  2F1T A;  3PGR A;  1OSM A;  4FZM A;  2KXP A;  4BUM X;  2MHL A;  8PRN A;  2QTK A;  2OMF A;  2CWQ A;  3A0H O;  2O4D A;  3AA0 A;  2X9K A;  4FZN A;  4N75 A;  2M06 A;  2GMY A;  5D5D A;  2M07 A;  3UAQ A;  1GFQ A;  4O3Y A;  3LK4 1;  1OPF A;  4KR4 A;  3KZI O;  2WVP A;  3AAA B;  3AAE B;  5GTI O;  2PFX A;  1H6S 1;  2KDY A;  2Y2X A;  3AA1 B;  5EE2 A;  1MPF A;  6PRN A;  1G90 A;  4RJX A;  3D7I A;  2R8A A;  4FZL A;  4D5U A;  3BEY A;  4UB6 O;  1GFM A;  2Y0K A;  3VZW X;  3POX A;  4AKR B;  4AFK A;  4UB8 O;  3POR A;  2PRR A;  2K4T A;  3BS0 A;  5FVN A;  2ES9 A;  1MM4 A;  2KZ7 A;  1ZHY A;  2F1V A;  4AKM A;  5B66 O;  1P8C A;  4G76 A;  2POR A;  4PJ0 O;  3LK3 B;  3V8U A;  3LVY A;  2O4V A;  2ZLD A;  3AAA A;  1HXX A;  4IL6 O;  4G9Q A;  4K3C A;  4K3B A;  4U9C A;  3AA6 B;  3LK2 A;  3SY7 A;  5ADX L;  2R4O A;  4D65 A;  5T5F A;  2Y0L A;  2KZ7 B;  3PGS A;  4FMS A;  2JQY A;  4O4U A;  4GF4 A;  4RJW A;  3T0S A;  2WJQ A;  3POQ A;  5DIP A;  1THQ A;  3KVD D;  1QJP A;  2J1N A;  4RLB A;  5AFU K;  1QJ9 A;  3NSG A;  2R88 A;  3T24 A;  3AA7 B;  3G7G A;  4AUI A;  4CTD A;  1S5L O;  4C4V B;  3JTY A;  2Y0H A;  2Y7S A;  4O3W A;  5G26 A;  4E1T A;  1Q9F A;  2XG6 A;  2FGQ X;  2ZFG A;  2FGR A;  3SYB A;  3C1L A;  3VY9 X;  1E54 A;  4GHB A;  1VKE A;  3PF1 A;  3SYS A;  1IZN A;  2LFU A;  2XE1 A;  3AA7 A;  3A0B O;  3VZU X;  5G39 A;  3A2S X;  1T1L A;  2XE3 A;  2OUW A;  1IZN B;  4C00 A;  3DWN A;  4KRA A;  1P4T A;  2MNH A; 
#chains in the Genus database with same CATH homology
 2YPV A;  4O4X A;  3HOE A;  3RBH A;  4O3X B;  3VZT X;  4FSP A;  1GFP A;  1KNC A;  4AYI D;  3AA1 A;  2XE5 A;  4AZL A;  4GCP A;  2ERV A;  2JN8 A;  4QQ1 A;  1BH3 A;  4AYD C;  4LSI A;  5JDP A;  1YS5 A;  3UPG A;  4LSF A;  2JMM A;  2PRN A;  4AYE C;  1ORM A;  4LSE A;  2QEU A;  2XE2 A;  2J4U P;  3HOL A;  3SY9 A;  1ZHW A;  1ZHX A;  1QJ8 A;  2K0L A;  3DA4 A;  3K19 A;  4RL9 A;  3WI5 A;  4F4B A;  5GV0 A;  3VY8 X;  1ME5 A;  4GCS A;  5DL8 A;  2AF7 A;  2GE4 A;  2Q0T A;  3AA6 A;  7PRN A;  4FSO A;  3GP6 A;  2KXP B;  4C69 X;  4LSH A;  1HXU A;  2ODJ A;  4AKR A;  4JFB A;  4FOZ A;  3POU A;  3SZV A;  3WI4 A;  1BXW A;  2LHF A;  2IJC A;  4N59 A;  3VE1 A;  3DA3 A;  4E1S A;  1PRN A;  2YNK A;  4O3Z A;  2N2M A;  3FYX A;  2XMX A;  4Z3T A;  3UU2 A;  4D64 A;  1ZHZ A;  5ADX K;  1ZHT A;  4RLC A;  3SZD A;  3EMN X;  4XNK A;  2XTQ A;  3AA0 B;  3AAE A;  3C5O A;  3O0E A;  3QRA A;  1BT9 A;  1LW1 A;  3QRC A;  4FT6 A;  4AYM C;  4AYN A;  3PQU A;  4FRX A;  3T20 A;  2W81 C;  3LK3 A;  1GFN A;  4G75 A;  4O49 A;  1PHO A;  2W80 C;  1Q9G A;  2KC0 A;  2XTR A;  3TZG A;  5AFU L;  4FRT A;  5DL5 A;  4N58 A;  4FUV A;  4XNL A;  4B61 A;  4JCH A;  2N2L A;  1MM5 A;  3PQS A;  5IYU A;  5DL7 A;  1GU9 A;  4KR8 A;  3VE2 A;  4PUX A;  3LK2 B;  5DIK A;  3PRN A;  3HW9 A;  1HXT A;  2OYO A;  3HWB A;  1GFO A;  5DL6 A;  4FES A;  3LK4 2;  2X27 X;  2F1T A;  4BUM X;  1OSM A;  4FZM A;  2KXP A;  2MHL A;  8PRN A;  2QTK A;  2OMF A;  2CWQ A;  4FZN A;  2O4D A;  3AA0 A;  5PRN A;  5D5D A;  2M06 A;  2GMY A;  3UAQ A;  2M07 A;  1GFQ A;  4O3Y A;  3LK4 1;  1OPF A;  4KR4 A;  3AAA B;  3AAE B;  2PFX A;  1H6S 1;  2KDY A;  2Y2X A;  3AA1 B;  5EE2 A;  1MPF A;  6PRN A;  1G90 A;  4RJX A;  3D7I A;  4FZL A;  4D5U A;  3BEY A;  3VZW X;  1GFM A;  2Y0K A;  3POX A;  4AKR B;  4AFK A;  3POR A;  2PRR A;  2K4T A;  5FVN A;  2ES9 A;  1MM4 A;  2KZ7 A;  1ZHY A;  2F1V A;  4AKM A;  1P8C A;  4G76 A;  2POR A;  3LK3 B;  3V8U A;  3LVY A;  2O4V A;  2ZLD A;  3AAA A;  1HXX A;  4U9C A;  4G9Q A;  3SY7 A;  5ADX L;  3AA6 B;  3LK2 A;  4D65 A;  5T5F A;  2Y0L A;  2KZ7 B;  4FMS A;  4O4U A;  4GF4 A;  4RJW A;  3T0S A;  3POQ A;  5DIP A;  1THQ A;  3KVD D;  1QJP A;  2J1N A;  4RLB A;  5AFU K;  1QJ9 A;  3NSG A;  3T24 A;  4AUI A;  3AA7 B;  3G7G A;  3JTY A;  2Y0H A;  2Y7S A;  4O3W A;  5G26 A;  4E1T A;  1Q9F A;  2XG6 A;  2FGQ X;  2ZFG A;  2FGR A;  3SYB A;  3C1L A;  3VY9 X;  1E54 A;  4GHB A;  1VKE A;  3SYS A;  1IZN A;  2LFU A;  2XE1 A;  3AA7 A;  3VZU X;  3A2S X;  2XE3 A;  2OUW A;  1IZN B;  4GCQ A;  4KRA A;  1P4T A;  2MNH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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