1IZNA

Crystal structure of actin filament capping protein capz
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
275
structure length
275
Chain Sequence
b'RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords CapZ alpha-1 subunit
publication title Crystal structure of CapZ: structural basis for actin filament barbed end capping
pubmed doi rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 72
structure length 275
sequence length 275
chains with identical sequence C
ec nomenclature
pdb deposition date 2002-10-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 1iznA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 1iznA02
3AA1B 3AAAB 3AA0A 4AKRB 3LK3A 2KXPB 2KZ7B 3AA7A 3LK3B 3AA0B 5ADXK 3LK2A 3LK41 3AA7B 3AA6A 3LK2B 3LK42 1IZNA 3AAEA 5AFUL 3AA1A 3AAAA 3AA6B 4AKRA 1IZNB 3AAEB 2KXPA 2KZ7A 5ADXL 5AFUK
chains in the Genus database with same CATH superfamily
1P4TA 1ME5A 5KAFO 1MM5A 3JTYA 2PFXA 5DIPA 3T24A 3DA3A 3VE1A 1OPFA 3VY8X 3AA7B 4O4XA 3WI5A 2Y7SA 1ZHXA 1IZNA 5AFUL 2MHLA 3T0SA 3AA6B 3SZDA 4FMSA 3BRZA 3V8UA 1GFNA 5T5FA 4N58A 5AFUK 1QJ8A 5EE2A 2Y0LA 4FRXA 2FGQX 1YS5A 1MPFA 4AZLA 4LSFA 5E79O 4AKRA 2PRRA 2O4VA 2XMXA 1ZHZA 2Y0KA 2KZ7A 3AAAB 4AYNA 2XE2A 2N2MA 4LSIA 4FUVA 2F1CX 3SZVA 2GE4A 4AYMC 5JDPA 1Q9GA 1PRNA 4GF4A 5DL6A 1HXXA 3QRCA 3T20A 3PGUA 3HWBA 4N75A 4XNKA 3LK3A 3DA4A 4KRAA 4PUXA 3O0EA 4Z3TA 3LK3B 1P8CA 4KR8A 5KAIO 3BRYA 2XTRA 4E1TA 4FSOA 2AXTO 1BH3A 3PGSA 4IL6O 1HXTA 4C00A 2CWQA 3AA1B 2WJRA 4PR7A 4O3YA 4BUMX 3AAEA 3PF1A 4UB6O 3DWNA 5G39A 3SYBA 1ORMA 2AF7A 3SY7A 3TZGA 3NJTA 4GCPA 2W81C 2R4OA 4PJ0O 2R4PA 5DL7A 3BS0A 1G90A 4FT6A 2LFUA 4K3BA 3PORA 2O4DA 3EMNX 3HW9A 1IZNB 3DWOX 2KXPA 4GCQA 4AFKA 4AKMA 1QJ9A 3D7IA 3C5OA 4C4VA 2XE3A 2N2LA 3PRNA 3LVYA 2YNKA 3VY9X 3BEYA 1ZHYA 1ZHWA 3G7GA 4FOZA 3QRAA 4O4UA 4GHBA 4AKRB 4GCSA 1QJPA 1T1LA 2LHFA 2KZ7B 1GFOA 2JQYA 2ERVA 3WI4A 2M07A 4G9QA 2PORA 3VZWX 3VZUX 3POQA 3POUA 2X27X 5DL8A 1GFMA 4QQ1A 5DIKA 5GTIO 2WVPA 1BT9A 3UPGA 4XNLA 3LK42 3WU2O 2ZLDA 1KNCA 2IWVA 2IJCA 4CTDA 2OYOA 1Q9FA 4KR4A 3LK2A 4UB8O 3LK41 4G75A 3SY9A 4RJXA 3PQUA 4RLCA 5G3AA 5DL5A 2OUWA 3AAEB 3FYXA 4JFBA 3UU2A 3AA0A 1MM4A 1OSMA 2ZFGA 4O3ZA 4F4BA 3DZMA 2WJQA 1VKEA 4O3XB 3K19A 1HXUA 4K3CA 2XE5A 1E54A 4RL9A 5FVNA 2R89A 1PHOA 4E1SA 4FESA 3NSGA 4C69X 2KXPB 3AA7A 3KVDD 3SYSA 4D64A 1ZHTA 4LSHA 4RJWA 8PRNA 2R4NA 3AA6A 4C4VB 4AYID 2OMFA 3HOEA 3A0HO 5IYUA 3VE2A 4AYEC 1GFPA 2XG6A 3KZIO 5ADXL 1BXWA 4AUIA 1LW1A 4G76A 2J4UP 1H6S1 3PGRA 5ADXK 1S5LO 2PRNA 4LSEA 2IWWA 5GTHO 4N59A 4D5UA 2XE1A 3AAAA 3POXA 4O3WA 2KDYA 4B61A 2FGRA 2QTKA 5G38A 2R88A 2JN8A 2QEUA 4FSPA 5PRNA 5H2FO 5GV0A 5B5EO 4N74A 6PRNA 2F1VA 3GP6A 5TISO 2GMYA 4FZNA 3PQSA 2F1TA 4FZMA 5D5DA 2M06A 2Y0HA 4FZLA 3C1LA 5G26A 4U9CA 2KC0A 4D65A 4JCHA 7PRNA 3HOLA 2MNHA 3LK2B 2K0LA 4RLBA 1GFQA 3VZTX 3AA1A 5B66O 2YPVA 4O49A 1THQA 2R8AA 3RBHA 2X9KA 3A0BO 3AA0B 2Q0TA 1GU9A 2W80C 4FQEA 3UAQA 2J1NA 1T16A 2XTQA 3A2SX 3JCUO 4AYDC 2JMMA 2R4LA 2ES9A 4FRTA 2ODJA 2K4TA 2Y2XA
chains in the Genus database with same CATH topology
1BXWA 3AA1B 3POUA 2X27X 1LW1A 4G76A 4AUIA 1H6S1 5DL8A 1P4TA 1GFMA 2J4UP 1ME5A 4QQ1A 1MM5A 5DIKA 3JTYA 2PFXA 5DIPA 3VZUX 3T24A 3DA3A 5ADXK 4O3YA 1OPFA 3VE1A 2PRNA 4LSEA 4BUMX 3VY8X 1BT9A 3UPGA 3AA7B 4XNLA 4O4XA 3WI5A 2Y7SA 3LK42 1ZHXA 1IZNA 3AAEA 4N59A 2ZLDA 1KNCA 4D5UA 5AFUL 2XE1A 2MHLA 3AAAA 3AA6B 3POXA 4O3WA 4FMSA 3SYBA 3SZDA 2KDYA 3T0SA 3V8UA 1ORMA 2AF7A 1GFNA 5T5FA 4N58A 3SY7A 2IJCA 3TZGA 5AFUK 4B61A 4GCPA 1QJ8A 2W81C 2FGRA 2QTKA 5EE2A 2Y0LA 2OYOA 1Q9FA 4FRXA 2FGQX 4KR4A 3LK2A 2JN8A 2QEUA 4FSPA 5PRNA 3LK41 1YS5A 4G75A 1MPFA 5DL7A 5GV0A 3SY9A 4AZLA 4RJXA 1G90A 4LSFA 4FT6A 3PQUA 2LFUA 4RLCA 6PRNA 3PORA 2O4DA 3EMNX 2F1VA 3GP6A 4AKRA 3HW9A 1IZNB 2OUWA 2PRRA 3AAEB 3FYXA 2O4VA 2XMXA 5DL5A 1ZHZA 2GMYA 2Y0KA 4FZNA 4JFBA 3PQSA 3UU2A 2KXPA 2KZ7A 3AAAB 4GCQA 3AA0A 4AFKA 1MM4A 1QJ9A 2F1TA 4FZMA 1OSMA 4AKMA 2XE2A 4AYNA 2ZFGA 5D5DA 2M06A 2Y0HA 4O3ZA 3D7IA 2N2MA 3C5OA 4FZLA 4LSIA 3C1LA 5G26A 4FUVA 3SZVA 2XE3A 4U9CA 4F4BA 2KC0A 4D65A 4JCHA 2GE4A 7PRNA 1VKEA 2N2LA 3HOLA 2MNHA 4O3XB 4AYMC 5JDPA 1Q9GA 1PRNA 3LK2B 3K19A 2K0LA 4GF4A 5DL6A 4RLBA 3PRNA 3LVYA 1HXXA 1HXUA 1GFQA 2YNKA 3VY9X 3VZTX 2XE5A 1ZHYA 3AA1A 3BEYA 3QRCA 1E54A 3T20A 4RL9A 5FVNA 2YPVA 1ZHWA 3HWBA 4O49A 1THQA 3G7GA 4FOZA 1PHOA 3QRAA 4O4UA 4GHBA 3RBHA 4XNKA 4E1SA 4AKRB 3LK3A 3DA4A 4FESA 4KRAA 4PUXA 3NSGA 3O0EA 4GCSA 1QJPA 4C69X 2KXPB 2KZ7B 2LHFA 4Z3TA 3AA7A 3LK3B 3KVDD 3SYSA 3AA0B 1P8CA 4KR8A 1GFOA 2Q0TA 4D64A 1GU9A 2W80C 1ZHTA 4LSHA 3UAQA 2XTRA 2ERVA 4RJWA 4E1TA 4FSOA 3WI4A 8PRNA 2M07A 2J1NA 4G9QA 3AA6A 2PORA 1BH3A 4AYID 2OMFA 2XTQA 3HOEA 3A2SX 3VZWX 4AYDC 2JMMA 5IYUA 2ES9A 4FRTA 3VE2A 4AYEC 1HXTA 2ODJA 1GFPA 2CWQA 2K4TA 2Y2XA 2XG6A 5ADXL 3POQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AA1 B;  3AAA B;  3AA0 A;  4AKR B;  3LK3 A;  2KXP B;  2KZ7 B;  3AA7 A;  3LK3 B;  3AA0 B;  5ADX K;  3LK2 A;  3LK4 1;  3AA7 B;  3AA6 A;  3LK2 B;  3LK4 2;  1IZN A;  3AAE A;  5AFU L;  3AA1 A;  3AAA A;  3AA6 B;  4AKR A;  1IZN B;  3AAE B;  2KXP A;  2KZ7 A;  5ADX L;  5AFU K; 
#chains in the Genus database with same CATH topology
 1P4T A;  1ME5 A;  5KAF O;  1MM5 A;  3JTY A;  2PFX A;  5DIP A;  3T24 A;  3DA3 A;  3VE1 A;  1OPF A;  3VY8 X;  3AA7 B;  4O4X A;  3WI5 A;  2Y7S A;  1ZHX A;  1IZN A;  5AFU L;  2MHL A;  3T0S A;  3AA6 B;  3SZD A;  4FMS A;  3BRZ A;  3V8U A;  1GFN A;  5T5F A;  4N58 A;  5AFU K;  1QJ8 A;  5EE2 A;  2Y0L A;  4FRX A;  2FGQ X;  1YS5 A;  1MPF A;  4AZL A;  4LSF A;  5E79 O;  4AKR A;  2PRR A;  2O4V A;  2XMX A;  1ZHZ A;  2Y0K A;  2KZ7 A;  3AAA B;  4AYN A;  2XE2 A;  2N2M A;  4LSI A;  4FUV A;  2F1C X;  3SZV A;  2GE4 A;  4AYM C;  5JDP A;  1Q9G A;  1PRN A;  4GF4 A;  5DL6 A;  1HXX A;  3QRC A;  3T20 A;  3PGU A;  3HWB A;  4N75 A;  4XNK A;  3LK3 A;  3DA4 A;  4KRA A;  4PUX A;  3O0E A;  4Z3T A;  3LK3 B;  1P8C A;  4KR8 A;  5KAI O;  3BRY A;  2XTR A;  4E1T A;  4FSO A;  2AXT O;  1BH3 A;  3PGS A;  4IL6 O;  1HXT A;  4C00 A;  2CWQ A;  3AA1 B;  2WJR A;  4PR7 A;  4O3Y A;  4BUM X;  3AAE A;  3PF1 A;  4UB6 O;  3DWN A;  5G39 A;  3SYB A;  1ORM A;  2AF7 A;  3SY7 A;  3TZG A;  3NJT A;  4GCP A;  2W81 C;  2R4O A;  4PJ0 O;  2R4P A;  5DL7 A;  3BS0 A;  1G90 A;  4FT6 A;  2LFU A;  4K3B A;  3POR A;  2O4D A;  3EMN X;  3HW9 A;  1IZN B;  3DWO X;  2KXP A;  4GCQ A;  4AFK A;  4AKM A;  1QJ9 A;  3D7I A;  3C5O A;  4C4V A;  2XE3 A;  2N2L A;  3PRN A;  3LVY A;  2YNK A;  3VY9 X;  3BEY A;  1ZHY A;  1ZHW A;  3G7G A;  4FOZ A;  3QRA A;  4O4U A;  4GHB A;  4AKR B;  4GCS A;  1QJP A;  1T1L A;  2LHF A;  2KZ7 B;  1GFO A;  2JQY A;  2ERV A;  3WI4 A;  2M07 A;  4G9Q A;  2POR A;  3VZW X;  3VZU X;  3POQ A;  3POU A;  2X27 X;  5DL8 A;  1GFM A;  4QQ1 A;  5DIK A;  5GTI O;  2WVP A;  1BT9 A;  3UPG A;  4XNL A;  3LK4 2;  3WU2 O;  2ZLD A;  1KNC A;  2IWV A;  2IJC A;  4CTD A;  2OYO A;  1Q9F A;  4KR4 A;  3LK2 A;  4UB8 O;  3LK4 1;  4G75 A;  3SY9 A;  4RJX A;  3PQU A;  4RLC A;  5G3A A;  5DL5 A;  2OUW A;  3AAE B;  3FYX A;  4JFB A;  3UU2 A;  3AA0 A;  1MM4 A;  1OSM A;  2ZFG A;  4O3Z A;  4F4B A;  3DZM A;  2WJQ A;  1VKE A;  4O3X B;  3K19 A;  1HXU A;  4K3C A;  2XE5 A;  1E54 A;  4RL9 A;  5FVN A;  2R89 A;  1PHO A;  4E1S A;  4FES A;  3NSG A;  4C69 X;  2KXP B;  3AA7 A;  3KVD D;  3SYS A;  4D64 A;  1ZHT A;  4LSH A;  4RJW A;  8PRN A;  2R4N A;  3AA6 A;  4C4V B;  4AYI D;  2OMF A;  3HOE A;  3A0H O;  5IYU A;  3VE2 A;  4AYE C;  1GFP A;  2XG6 A;  3KZI O;  5ADX L;  1BXW A;  4AUI A;  1LW1 A;  4G76 A;  2J4U P;  1H6S 1;  3PGR A;  5ADX K;  1S5L O;  2PRN A;  4LSE A;  2IWW A;  5GTH O;  4N59 A;  4D5U A;  2XE1 A;  3AAA A;  3POX A;  4O3W A;  2KDY A;  4B61 A;  2FGR A;  2QTK A;  5G38 A;  2R88 A;  2JN8 A;  2QEU A;  4FSP A;  5PRN A;  5H2F O;  5GV0 A;  5B5E O;  4N74 A;  6PRN A;  2F1V A;  3GP6 A;  5TIS O;  2GMY A;  4FZN A;  3PQS A;  2F1T A;  4FZM A;  5D5D A;  2M06 A;  2Y0H A;  4FZL A;  3C1L A;  5G26 A;  4U9C A;  2KC0 A;  4D65 A;  4JCH A;  7PRN A;  3HOL A;  2MNH A;  3LK2 B;  2K0L A;  4RLB A;  1GFQ A;  3VZT X;  3AA1 A;  5B66 O;  2YPV A;  4O49 A;  1THQ A;  2R8A A;  3RBH A;  2X9K A;  3A0B O;  3AA0 B;  2Q0T A;  1GU9 A;  2W80 C;  4FQE A;  3UAQ A;  2J1N A;  1T16 A;  2XTQ A;  3A2S X;  3JCU O;  4AYD C;  2JMM A;  2R4L A;  2ES9 A;  4FRT A;  2ODJ A;  2K4T A;  2Y2X A; 
#chains in the Genus database with same CATH homology
 1BXW A;  3AA1 B;  3POU A;  2X27 X;  1LW1 A;  4G76 A;  4AUI A;  1H6S 1;  5DL8 A;  1P4T A;  1GFM A;  2J4U P;  1ME5 A;  4QQ1 A;  1MM5 A;  5DIK A;  3JTY A;  2PFX A;  5DIP A;  3VZU X;  3T24 A;  3DA3 A;  5ADX K;  4O3Y A;  1OPF A;  3VE1 A;  2PRN A;  4LSE A;  4BUM X;  3VY8 X;  1BT9 A;  3UPG A;  3AA7 B;  4XNL A;  4O4X A;  3WI5 A;  2Y7S A;  3LK4 2;  1ZHX A;  1IZN A;  3AAE A;  4N59 A;  2ZLD A;  1KNC A;  4D5U A;  5AFU L;  2XE1 A;  2MHL A;  3AAA A;  3AA6 B;  3POX A;  4O3W A;  4FMS A;  3SYB A;  3SZD A;  2KDY A;  3T0S A;  3V8U A;  1ORM A;  2AF7 A;  1GFN A;  5T5F A;  4N58 A;  3SY7 A;  2IJC A;  3TZG A;  5AFU K;  4B61 A;  4GCP A;  1QJ8 A;  2W81 C;  2FGR A;  2QTK A;  5EE2 A;  2Y0L A;  2OYO A;  1Q9F A;  4FRX A;  2FGQ X;  4KR4 A;  3LK2 A;  2JN8 A;  2QEU A;  4FSP A;  5PRN A;  3LK4 1;  1YS5 A;  4G75 A;  1MPF A;  5DL7 A;  5GV0 A;  3SY9 A;  4AZL A;  4RJX A;  1G90 A;  4LSF A;  4FT6 A;  3PQU A;  2LFU A;  4RLC A;  6PRN A;  3POR A;  2O4D A;  3EMN X;  2F1V A;  3GP6 A;  4AKR A;  3HW9 A;  1IZN B;  2OUW A;  2PRR A;  3AAE B;  3FYX A;  2O4V A;  2XMX A;  5DL5 A;  1ZHZ A;  2GMY A;  2Y0K A;  4FZN A;  4JFB A;  3PQS A;  3UU2 A;  2KXP A;  2KZ7 A;  3AAA B;  4GCQ A;  3AA0 A;  4AFK A;  1MM4 A;  1QJ9 A;  2F1T A;  4FZM A;  1OSM A;  4AKM A;  2XE2 A;  4AYN A;  2ZFG A;  5D5D A;  2M06 A;  2Y0H A;  4O3Z A;  3D7I A;  2N2M A;  3C5O A;  4FZL A;  4LSI A;  3C1L A;  5G26 A;  4FUV A;  3SZV A;  2XE3 A;  4U9C A;  4F4B A;  2KC0 A;  4D65 A;  4JCH A;  2GE4 A;  7PRN A;  1VKE A;  2N2L A;  3HOL A;  2MNH A;  4O3X B;  4AYM C;  5JDP A;  1Q9G A;  1PRN A;  3LK2 B;  3K19 A;  2K0L A;  4GF4 A;  5DL6 A;  4RLB A;  3PRN A;  3LVY A;  1HXX A;  1HXU A;  1GFQ A;  2YNK A;  3VY9 X;  3VZT X;  2XE5 A;  1ZHY A;  3AA1 A;  3BEY A;  3QRC A;  1E54 A;  3T20 A;  4RL9 A;  5FVN A;  2YPV A;  1ZHW A;  3HWB A;  4O49 A;  1THQ A;  3G7G A;  4FOZ A;  1PHO A;  3QRA A;  4O4U A;  4GHB A;  3RBH A;  4XNK A;  4E1S A;  4AKR B;  3LK3 A;  3DA4 A;  4FES A;  4KRA A;  4PUX A;  3NSG A;  3O0E A;  4GCS A;  1QJP A;  4C69 X;  2KXP B;  2KZ7 B;  2LHF A;  4Z3T A;  3AA7 A;  3LK3 B;  3KVD D;  3SYS A;  3AA0 B;  1P8C A;  4KR8 A;  1GFO A;  2Q0T A;  4D64 A;  1GU9 A;  2W80 C;  1ZHT A;  4LSH A;  3UAQ A;  2XTR A;  2ERV A;  4RJW A;  4E1T A;  4FSO A;  3WI4 A;  8PRN A;  2M07 A;  2J1N A;  4G9Q A;  3AA6 A;  2POR A;  1BH3 A;  4AYI D;  2OMF A;  2XTQ A;  3HOE A;  3A2S X;  3VZW X;  4AYD C;  2JMM A;  5IYU A;  2ES9 A;  4FRT A;  3VE2 A;  4AYE C;  1HXT A;  2ODJ A;  1GFP A;  2CWQ A;  2K4T A;  2Y2X A;  2XG6 A;  5ADX L;  3POQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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