1IZNA

Crystal structure of actin filament capping protein capz
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
275
structure length
275
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords CapZ alpha-1 subunit
publication title Crystal structure of CapZ: structural basis for actin filament barbed end capping
pubmed doi rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 72
structure length 275
sequence length 275
chains with identical sequence C
ec nomenclature
pdb deposition date 2002-10-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 1iznA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 1iznA02
5ADXL 2KXPB 3AA6B 3AA7B 2KZ7A 3AA1A 5AFUK 5ADXK 3AAEB 3LK41 3LK3B 3LK42 1IZNB 4AKRB 2KXPA 3AA0A 3AAAB 3AA6A 3AA7A 3AAEA 3LK2B 3LK3A 4AKRA 1IZNA 3AA1B 2KZ7B 3AAAA 3AA0B 3LK2A 5AFUL
chains in the Genus database with same CATH superfamily
1ZHTA 5IYUA 1GFQA 3POUA 3QRAA 2ERVA 4FMSA 5GV0A 1GFOA 4FT6A 3WI4A 2AF7A 2X27X 3VZTX 1ME5A 4UB8O 2CWQA 2YNKA 2XE2A 2JMMA 5KAIO 2X9KA 4KRAA 2J1NA 4GF4A 2WJRA 3VE2A 3AAEB 7PRNA 1KNCA 2Y7SA 2R88A 3FYXA 5DIPA 1PHOA 2O4DA 2R4PA 2PORA 3HWBA 3D7IA 4RLCA 1T1LA 4PUXA 2WVPA 4FUVA 5G39A 3AA0A 1THQA 3BRZA 5GTHO 2PRRA 3AAEA 1P4TA 3DWOX 1IZNA 2PRNA 1Q9GA 3AA1B 3PF1A 5H2FO 4LSIA 2PFXA 1BH3A 2FGRA 2ZLDA 1ZHWA 4QQ1A 3G7GA 1BT9A 2F1TA 3JTYA 2FGQX 3VZWX 2N2LA 3DA3A 3C1LA 1ZHYA 4E1TA 2MHLA 3PQSA 3AAAA 3GP6A 5G38A 5ADXL 2R89A 6PRNA 2OMFA 5B5EO 3EMNX 4AKMA 2ODJA 2R8AA 2JQYA 3DA4A 3AA6A 3AA7A 4AUIA 5GTIO 2LHFA 1S5LO 4O3XB 4RJWA 2Q0TA 3A2SX 4XNKA 1Q9FA 5AFUK 3HOEA 4C4VB 2QTKA 3SYBA 4O4XA 3SY9A 3HW9A 1LW1A 2LFUA 3LK3A 2R4OA 3JCUO 4PJ0O 3T20A 2YPVA 3T0SA 2GMYA 2QEUA 4F4BA 2IWVA 5G26A 3QRCA 4N58A 3PQUA 2JN8A 3LK2B 5DL6A 4IL6O 1QJPA 4D5UA 4GCPA 2KXPB 4G75A 4O49A 3NJTA 3PGRA 3WU2O 3BS0A 5B66O 2AXTO 2XE1A 3RBHA 2XG6A 2XMXA 3C5OA 4O4UA 2XTQA 4U9CA 2R4LA 3SY7A 2IJCA 4LSEA 4D64A 1T16A 3HOLA 2KXPA 5DL8A 1OSMA 3PGSA 4KR8A 4AFKA 4CTDA 4UB6O 4LSFA 4FZLA 2N2MA 3WI5A 5FVNA 5DL5A 1VKEA 3PORA 2KDYA 3UPGA 2F1CX 3VZUX 3AA1A 4GCSA 1GFMA 5PRNA 3BEYA 4O3WA 4FQEA 1P8CA 4FZNA 4FESA 4E1SA 4D65A 4B61A 5D5DA 4RJXA 2IWWA 3VY9X 1E54A 1ZHXA 2MNHA 4GCQA 3TZGA 3KZIO 3K19A 2Y2XA 4C69X 2W80C 5ADXK 4PR7A 4JCHA 1ZHZA 4JFBA 3T24A 4FZMA 1GFPA 5EE2A 2XTRA 1GU9A 4AYNA 2O4VA 3A0BO 2ES9A 4C00A 2KZ7B 3A0HO 1PRNA 4AYDC 2F1VA 2Y0HA 3DWNA 3POQA 4AYEC 5E79O 2M07A 3VY8X 2Y0KA 8PRNA 4AZLA 2ZFGA 5JDPA 2GE4A 4G76A 1GFNA 4C4VA 4FOZA 3DZMA 3VE1A 4O3ZA 1MM4A 1QJ8A 3AA0B 1H6S1 1MPFA 3SZVA 1YS5A 2KZ7A 3LVYA 4RL9A 5KAFO 5DIKA 1IZNB 2XE3A 4FSPA 4Z3TA 4N75A 4FSOA 3BRYA 4FRXA 1HXTA 3UU2A 2M06A 3LK2A 1HXXA 2OUWA 2K0LA 4GHBA 5G3AA 3AAAB 4XNLA 2OYOA 3V8UA 3SYSA 4G9QA 4LSHA 4BUMX 4N59A 4KR4A 5TISO 3POXA 3AA6B 3AA7B 3SZDA 3LK41 2Y0LA 3LK42 4AKRB 4K3BA 1MM5A 2K4TA 1BXWA 1HXUA 1QJ9A 4AYID 1ORMA 5AFUL 2W81C 2KC0A 5DL7A 5T5FA 3PRNA 3LK3B 3O0EA 2XE5A 2WJQA 4K3CA 4RLBA 3UAQA 4AYMC 1G90A 3KVDD 3PGUA 4AKRA 2R4NA 2J4UP 3NSGA 4N74A 4FRTA 1OPFA 4O3YA
chains in the Genus database with same CATH topology
5ADXL 1MPFA 1ZHTA 5IYUA 1GFQA 2IJCA 1YS5A 3SZVA 6PRNA 2KZ7A 2OMFA 3LVYA 4RL9A 3POUA 3QRAA 5DIKA 4LSEA 2ERVA 4FMSA 4D64A 3EMNX 4AKMA 2ODJA 1IZNB 2XE3A 3HOLA 4FSPA 4Z3TA 2KXPA 3DA4A 5DL8A 5GV0A 3AA6A 3AA7A 1OSMA 4AUIA 4KR8A 1GFOA 4FT6A 2LHFA 3WI4A 4AFKA 4FSOA 4O3XB 2AF7A 2X27X 4LSFA 1ME5A 4RJWA 3VZTX 4FZLA 2N2MA 2Q0TA 3WI5A 5FVNA 2CWQA 4FRXA 1HXTA 3A2SX 1VKEA 5DL5A 3UU2A 4XNKA 2M06A 2YNKA 3PORA 2XE2A 2JMMA 3LK2A 4KRAA 2J1NA 1HXXA 2KDYA 4GF4A 1Q9FA 3UPGA 2OUWA 3VZUX 3AA1A 3VE2A 4GCSA 5AFUK 3HOEA 3AAEB 1GFMA 7PRNA 5PRNA 3BEYA 1KNCA 2K0LA 2Y7SA 4O3WA 2QTKA 4GHBA 3SYBA 3FYXA 4O4XA 3AAAB 1P8CA 3SY9A 4XNLA 5DIPA 4FZNA 4FESA 4E1SA 2OYOA 3SY7A 3HW9A 4D65A 1LW1A 3V8UA 4B61A 2LFUA 3LK3A 5D5DA 4RJXA 3SYSA 3VY9X 1PHOA 4G9QA 1E54A 2O4DA 4LSHA 4BUMX 4N59A 3T20A 4KR4A 2PORA 1ZHXA 2MNHA 3HWBA 2YPVA 3T0SA 3D7IA 3POXA 4GCQA 3AA6B 3AA7B 4RLCA 3TZGA 2GMYA 3K19A 2Y2XA 4PUXA 3SZDA 2QEUA 4C69X 2W80C 4FUVA 5ADXK 4F4BA 3LK41 2Y0LA 4JCHA 1ZHZA 3LK42 4JFBA 3T24A 5G26A 4AKRB 3AA0A 1THQA 3QRCA 1MM5A 4FZMA 1GFPA 4N58A 3PQUA 2K4TA 1BXWA 5EE2A 2JN8A 2PRRA 3AAEA 1P4TA 2XTRA 3LK2B 1GU9A 5DL6A 4AYNA 2O4VA 2ES9A 1IZNA 2PRNA 1HXUA 1Q9GA 3AA1B 1QJPA 2KZ7B 4D5UA 1QJ9A 1PRNA 4LSIA 4AYDC 2F1VA 2Y0HA 4AYID 3POQA 2PFXA 4AYEC 1ORMA 5AFUL 4GCPA 2KXPB 1BH3A 2FGRA 2W81C 2M07A 3VY8X 2Y0KA 2KC0A 5DL7A 4G75A 4O49A 2ZLDA 3PRNA 5T5FA 4AZLA 8PRNA 1ZHWA 3LK3B 2ZFGA 3O0EA 2XE5A 4RLBA 5JDPA 4QQ1A 3UAQA 3G7GA 4AYMC 1BT9A 2F1TA 1G90A 2GE4A 4G76A 3JTYA 3KVDD 2FGQX 3VZWX 2N2LA 1GFNA 3DA3A 3C1LA 1ZHYA 4E1TA 2XE1A 3RBHA 4AKRA 2XG6A 2XMXA 3C5OA 2MHLA 3PQSA 2J4UP 4FOZA 3NSGA 4O4UA 3AAAA 4FRTA 1OPFA 2XTQA 3VE1A 3GP6A 4U9CA 4O3ZA 1MM4A 1QJ8A 4O3YA 3AA0B 1H6S1
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5ADX L;  2KXP B;  3AA6 B;  3AA7 B;  2KZ7 A;  3AA1 A;  5AFU K;  5ADX K;  3AAE B;  3LK4 1;  3LK3 B;  3LK4 2;  1IZN B;  4AKR B;  2KXP A;  3AA0 A;  3AAA B;  3AA6 A;  3AA7 A;  3AAE A;  3LK2 B;  3LK3 A;  4AKR A;  1IZN A;  3AA1 B;  2KZ7 B;  3AAA A;  3AA0 B;  3LK2 A;  5AFU L; 
#chains in the Genus database with same CATH topology
 1ZHT A;  5IYU A;  1GFQ A;  3POU A;  3QRA A;  2ERV A;  4FMS A;  5GV0 A;  1GFO A;  4FT6 A;  3WI4 A;  2AF7 A;  2X27 X;  3VZT X;  1ME5 A;  4UB8 O;  2CWQ A;  2YNK A;  2XE2 A;  2JMM A;  5KAI O;  2X9K A;  4KRA A;  2J1N A;  4GF4 A;  2WJR A;  3VE2 A;  3AAE B;  7PRN A;  1KNC A;  2Y7S A;  2R88 A;  3FYX A;  5DIP A;  1PHO A;  2O4D A;  2R4P A;  2POR A;  3HWB A;  3D7I A;  4RLC A;  1T1L A;  4PUX A;  2WVP A;  4FUV A;  5G39 A;  3AA0 A;  1THQ A;  3BRZ A;  5GTH O;  2PRR A;  3AAE A;  1P4T A;  3DWO X;  1IZN A;  2PRN A;  1Q9G A;  3AA1 B;  3PF1 A;  5H2F O;  4LSI A;  2PFX A;  1BH3 A;  2FGR A;  2ZLD A;  1ZHW A;  4QQ1 A;  3G7G A;  1BT9 A;  2F1T A;  3JTY A;  2FGQ X;  3VZW X;  2N2L A;  3DA3 A;  3C1L A;  1ZHY A;  4E1T A;  2MHL A;  3PQS A;  3AAA A;  3GP6 A;  5G38 A;  5ADX L;  2R89 A;  6PRN A;  2OMF A;  5B5E O;  3EMN X;  4AKM A;  2ODJ A;  2R8A A;  2JQY A;  3DA4 A;  3AA6 A;  3AA7 A;  4AUI A;  5GTI O;  2LHF A;  1S5L O;  4O3X B;  4RJW A;  2Q0T A;  3A2S X;  4XNK A;  1Q9F A;  5AFU K;  3HOE A;  4C4V B;  2QTK A;  3SYB A;  4O4X A;  3SY9 A;  3HW9 A;  1LW1 A;  2LFU A;  3LK3 A;  2R4O A;  3JCU O;  4PJ0 O;  3T20 A;  2YPV A;  3T0S A;  2GMY A;  2QEU A;  4F4B A;  2IWV A;  5G26 A;  3QRC A;  4N58 A;  3PQU A;  2JN8 A;  3LK2 B;  5DL6 A;  4IL6 O;  1QJP A;  4D5U A;  4GCP A;  2KXP B;  4G75 A;  4O49 A;  3NJT A;  3PGR A;  3WU2 O;  3BS0 A;  5B66 O;  2AXT O;  2XE1 A;  3RBH A;  2XG6 A;  2XMX A;  3C5O A;  4O4U A;  2XTQ A;  4U9C A;  2R4L A;  3SY7 A;  2IJC A;  4LSE A;  4D64 A;  1T16 A;  3HOL A;  2KXP A;  5DL8 A;  1OSM A;  3PGS A;  4KR8 A;  4AFK A;  4CTD A;  4UB6 O;  4LSF A;  4FZL A;  2N2M A;  3WI5 A;  5FVN A;  5DL5 A;  1VKE A;  3POR A;  2KDY A;  3UPG A;  2F1C X;  3VZU X;  3AA1 A;  4GCS A;  1GFM A;  5PRN A;  3BEY A;  4O3W A;  4FQE A;  1P8C A;  4FZN A;  4FES A;  4E1S A;  4D65 A;  4B61 A;  5D5D A;  4RJX A;  2IWW A;  3VY9 X;  1E54 A;  1ZHX A;  2MNH A;  4GCQ A;  3TZG A;  3KZI O;  3K19 A;  2Y2X A;  4C69 X;  2W80 C;  5ADX K;  4PR7 A;  4JCH A;  1ZHZ A;  4JFB A;  3T24 A;  4FZM A;  1GFP A;  5EE2 A;  2XTR A;  1GU9 A;  4AYN A;  2O4V A;  3A0B O;  2ES9 A;  4C00 A;  2KZ7 B;  3A0H O;  1PRN A;  4AYD C;  2F1V A;  2Y0H A;  3DWN A;  3POQ A;  4AYE C;  5E79 O;  2M07 A;  3VY8 X;  2Y0K A;  8PRN A;  4AZL A;  2ZFG A;  5JDP A;  2GE4 A;  4G76 A;  1GFN A;  4C4V A;  4FOZ A;  3DZM A;  3VE1 A;  4O3Z A;  1MM4 A;  1QJ8 A;  3AA0 B;  1H6S 1;  1MPF A;  3SZV A;  1YS5 A;  2KZ7 A;  3LVY A;  4RL9 A;  5KAF O;  5DIK A;  1IZN B;  2XE3 A;  4FSP A;  4Z3T A;  4N75 A;  4FSO A;  3BRY A;  4FRX A;  1HXT A;  3UU2 A;  2M06 A;  3LK2 A;  1HXX A;  2OUW A;  2K0L A;  4GHB A;  5G3A A;  3AAA B;  4XNL A;  2OYO A;  3V8U A;  3SYS A;  4G9Q A;  4LSH A;  4BUM X;  4N59 A;  4KR4 A;  5TIS O;  3POX A;  3AA6 B;  3AA7 B;  3SZD A;  3LK4 1;  2Y0L A;  3LK4 2;  4AKR B;  4K3B A;  1MM5 A;  2K4T A;  1BXW A;  1HXU A;  1QJ9 A;  4AYI D;  1ORM A;  5AFU L;  2W81 C;  2KC0 A;  5DL7 A;  5T5F A;  3PRN A;  3LK3 B;  3O0E A;  2XE5 A;  2WJQ A;  4K3C A;  4RLB A;  3UAQ A;  4AYM C;  1G90 A;  3KVD D;  3PGU A;  4AKR A;  2R4N A;  2J4U P;  3NSG A;  4N74 A;  4FRT A;  1OPF A;  4O3Y A; 
#chains in the Genus database with same CATH homology
 5ADX L;  1MPF A;  1ZHT A;  5IYU A;  1GFQ A;  2IJC A;  1YS5 A;  3SZV A;  6PRN A;  2KZ7 A;  2OMF A;  3LVY A;  4RL9 A;  3POU A;  3QRA A;  5DIK A;  4LSE A;  2ERV A;  4FMS A;  4D64 A;  3EMN X;  4AKM A;  2ODJ A;  1IZN B;  2XE3 A;  3HOL A;  4FSP A;  4Z3T A;  2KXP A;  3DA4 A;  5DL8 A;  5GV0 A;  3AA6 A;  3AA7 A;  1OSM A;  4AUI A;  4KR8 A;  1GFO A;  4FT6 A;  2LHF A;  3WI4 A;  4AFK A;  4FSO A;  4O3X B;  2AF7 A;  2X27 X;  4LSF A;  1ME5 A;  4RJW A;  3VZT X;  4FZL A;  2N2M A;  2Q0T A;  3WI5 A;  5FVN A;  2CWQ A;  4FRX A;  1HXT A;  3A2S X;  1VKE A;  5DL5 A;  3UU2 A;  4XNK A;  2M06 A;  2YNK A;  3POR A;  2XE2 A;  2JMM A;  3LK2 A;  4KRA A;  2J1N A;  1HXX A;  2KDY A;  4GF4 A;  1Q9F A;  3UPG A;  2OUW A;  3VZU X;  3AA1 A;  3VE2 A;  4GCS A;  5AFU K;  3HOE A;  3AAE B;  1GFM A;  7PRN A;  5PRN A;  3BEY A;  1KNC A;  2K0L A;  2Y7S A;  4O3W A;  2QTK A;  4GHB A;  3SYB A;  3FYX A;  4O4X A;  3AAA B;  1P8C A;  3SY9 A;  4XNL A;  5DIP A;  4FZN A;  4FES A;  4E1S A;  2OYO A;  3SY7 A;  3HW9 A;  4D65 A;  1LW1 A;  3V8U A;  4B61 A;  2LFU A;  3LK3 A;  5D5D A;  4RJX A;  3SYS A;  3VY9 X;  1PHO A;  4G9Q A;  1E54 A;  2O4D A;  4LSH A;  4BUM X;  4N59 A;  3T20 A;  4KR4 A;  2POR A;  1ZHX A;  2MNH A;  3HWB A;  2YPV A;  3T0S A;  3D7I A;  3POX A;  4GCQ A;  3AA6 B;  3AA7 B;  4RLC A;  3TZG A;  2GMY A;  3K19 A;  2Y2X A;  4PUX A;  3SZD A;  2QEU A;  4C69 X;  2W80 C;  4FUV A;  5ADX K;  4F4B A;  3LK4 1;  2Y0L A;  4JCH A;  1ZHZ A;  3LK4 2;  4JFB A;  3T24 A;  5G26 A;  4AKR B;  3AA0 A;  1THQ A;  3QRC A;  1MM5 A;  4FZM A;  1GFP A;  4N58 A;  3PQU A;  2K4T A;  1BXW A;  5EE2 A;  2JN8 A;  2PRR A;  3AAE A;  1P4T A;  2XTR A;  3LK2 B;  1GU9 A;  5DL6 A;  4AYN A;  2O4V A;  2ES9 A;  1IZN A;  2PRN A;  1HXU A;  1Q9G A;  3AA1 B;  1QJP A;  2KZ7 B;  4D5U A;  1QJ9 A;  1PRN A;  4LSI A;  4AYD C;  2F1V A;  2Y0H A;  4AYI D;  3POQ A;  2PFX A;  4AYE C;  1ORM A;  5AFU L;  4GCP A;  2KXP B;  1BH3 A;  2FGR A;  2W81 C;  2M07 A;  3VY8 X;  2Y0K A;  2KC0 A;  5DL7 A;  4G75 A;  4O49 A;  2ZLD A;  3PRN A;  5T5F A;  4AZL A;  8PRN A;  1ZHW A;  3LK3 B;  2ZFG A;  3O0E A;  2XE5 A;  4RLB A;  5JDP A;  4QQ1 A;  3UAQ A;  3G7G A;  4AYM C;  1BT9 A;  2F1T A;  1G90 A;  2GE4 A;  4G76 A;  3JTY A;  3KVD D;  2FGQ X;  3VZW X;  2N2L A;  1GFN A;  3DA3 A;  3C1L A;  1ZHY A;  4E1T A;  2XE1 A;  3RBH A;  4AKR A;  2XG6 A;  2XMX A;  3C5O A;  2MHL A;  3PQS A;  2J4U P;  4FOZ A;  3NSG A;  4O4U A;  3AAA A;  4FRT A;  1OPF A;  2XTQ A;  3VE1 A;  3GP6 A;  4U9C A;  4O3Z A;  1MM4 A;  1QJ8 A;  4O3Y A;  3AA0 B;  1H6S 1; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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