1IZNA

Crystal structure of actin filament capping protein capz
Total Genus 72
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
275
structure length
275
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Protein binding
molecule keywords CapZ alpha-1 subunit
publication title Crystal structure of CapZ: structural basis for actin filament barbed end capping
pubmed doi rcsb
source organism Gallus gallus
total genus 72
structure length 275
sequence length 275
chains with identical sequence C
ec nomenclature
pdb deposition date 2002-10-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 1iznA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 1iznA02
1IZNB 2KZ7B 2KXPA 3LK42 4AKRB 5AFUK 3LK2A 3AAAA 5AFUL 3AA0A 3LK3B 3AA6B 3AA1B 3AAEB 3LK41 2KXPB 3AA7A 2KZ7A 1IZNA 3AAAB 3LK2B 3AA0B 4AKRA 5ADXK 3LK3A 5ADXL 3AA6A 3AA1A 3AAEA 3AA7B
chains in the Genus database with same CATH superfamily
4QQ1A 1E54A 4G76A 4JFBA 5JDPA 4O4XA 3SY9A 4C00A 2ERVA 3AAEB 3POUA 1ZHXA 2PRRA 1MM4A 4FQEA 2R89A 3WI4A 4LSEA 5G39A 3PF1A 2K4TA 3SZDA 2AXTO 4G75A 5DL5A 3HW9A 3SYBA 4KR4A 2KDYA 2IWWA 1IZNB 3HOEA 5DIPA 2YPVA 3FYXA 4AYNA 1G90A 3VY8X 3V8UA 2JQYA 5B5EO 1HXTA 5DL6A 3VE2A 3GP6A 1Q9GA 3VZTX 4RL9A 4E1TA 2JN8A 1THQA 5G26A 3JTYA 4GCSA 2OUWA 2O4DA 3SYSA 5FVNA 5IYUA 3DWOX 4KRAA 4FRXA 4C4VA 4RJWA 2R4OA 3PQUA 3DWNA 2R8AA 4RJXA 2F1VA 4FRTA 4UB8O 2XTQA 2XG6A 2XTRA 5PRNA 5TISO 3D7IA 1BXWA 4O3WA 4IL6O 3PGSA 3A0BO 4RLBA 5G3AA 4GF4A 4O49A 5ADXK 3A0HO 2GMYA 2X9KA 3QRAA 4K3BA 3HOLA 3VZWX 2Y7SA 7PRNA 4LSIA 2IJCA 2IWVA 3AA0B 2XE3A 5ADXL 3AA1A 1BT9A 4PUXA 2FGQX 2WJRA 1GFNA 2KZ7B 3PQSA 4O4UA 2K0LA 2QEUA 2PRNA 2XMXA 3PGRA 3C1LA 2Y0KA 4JCHA 3LK41 2KXPB 1T1LA 2ODJA 4N58A 2PORA 5KAIO 3AA7A 4G9QA 3AAAB 3BRZA 5KAFO 1QJ9A 4GCPA 4D64A 1KNCA 4FESA 3VZUX 3BEYA 3DA4A 3A2SX 1GU9A 4KR8A 3NSGA 5GV0A 1LW1A 4FUVA 2WVPA 3DA3A 3POQA 3VE1A 4BUMX 5GTHO 1GFPA 4O3ZA 4CTDA 3RBHA 5AFUK 1ZHZA 1HXXA 3T24A 2XE1A 2LHFA 2XE2A 4LSFA 3LVYA 4AKRA 4FMSA 1GFMA 3LK42 2Q0TA 4FOZA 3UAQA 2O4VA 2J4UP 5AFUL 4AFKA 5GTIO 2F1TA 3TZGA 1H6S1 3WU2O 2N2LA 2N2MA 3G7GA 4XNLA 4AZLA 3LK3A 4C4VB 1P8CA 3AA6A 4GCQA 8PRNA 1MM5A 1PHOA 3LK2A 1HXUA 4C69X 5H2FO 4K3CA 4AYID 4RLCA 1GFOA 1MPFA 2AF7A 3K19A 4N75A 6PRNA 4PJ0O 4LSHA 2YNKA 3AAEA 3SY7A 2XE5A 4N74A 2ZFGA 2JMMA 4GHBA 2R4NA 1ME5A 1T16A 3C5OA 1VKEA 5E79O 4B61A 4FSPA 1IZNA 3HWBA 4U9CA 3PORA 5DIKA 4Z3TA 4XNKA 3EMNX 4FZLA 4AYEC 3VY9X 4O3XB 4AUIA 4F4BA 3AA1B 3O0EA 2X27X 5EE2A 4AKMA 5G38A 4E1SA 3AA7B 2OYOA 4AYDC 4UB6O 4FZNA 3UPGA 3QRCA 3KZIO 2LFUA 1GFQA 4FSOA 2FGRA 2OMFA 3SZVA 2MNHA 3PRNA 4PR7A 2ZLDA 3KVDD 2W81C 1Q9FA 2ES9A 1S5LO 5DL8A 1ORMA 2F1CX 2R4LA 2QTKA 2GE4A 1OSMA 2M07A 1QJ8A 3BS0A 3BRYA 2Y0LA 5DL7A 4N59A 2W80C 2J1NA 5B66O 1BH3A 4D65A 2MHLA 1P4TA 3T20A 4AKRB 3AA0A 2R4PA 3JCUO 1OPFA 3DZMA 5D5DA 2KZ7A 2PFXA 4D5UA 2KC0A 1ZHTA 2R88A 2Y2XA 1PRNA 5T5FA 2KXPA 3NJTA 2Y0HA 1ZHWA 3WI5A 2M06A 2WJQA 1QJPA 3AAAA 3LK3B 3AA6B 1ZHYA 2CWQA 3T0SA 3UU2A 4O3YA 3POXA 3LK2B 1YS5A 4FZMA 3PGUA 4FT6A 4AYMC
chains in the Genus database with same CATH topology
4QQ1A 3LK42 3QRAA 1E54A 4G76A 4JFBA 4FZNA 2Q0TA 4FOZA 3UAQA 2O4VA 3QRCA 5JDPA 3UPGA 2LFUA 3HOLA 1GFQA 2J4UP 4O4XA 5AFUL 4AFKA 3SY9A 2ERVA 3VZWX 3AAEB 4FSOA 3POUA 2Y7SA 2FGRA 1ZHXA 2OMFA 3SZVA 7PRNA 2MNHA 4LSIA 2PRRA 2F1TA 1MM4A 2IJCA 3PRNA 3TZGA 3WI4A 4LSEA 1H6S1 3AA0B 2K4TA 2ZLDA 3SZDA 8PRNA 4G75A 3KVDD 5DL5A 2N2LA 2W81C 2XE3A 2N2MA 3HW9A 3SYBA 3G7GA 4XNLA 4AZLA 4KR4A 3LK3A 5ADXL 1P8CA 2ES9A 3AA1A 3AA6A 1BT9A 1Q9FA 2KDYA 4PUXA 2FGQX 3PQSA 1GFNA 1IZNB 2KZ7B 1MM5A 5DIPA 2YPVA 3HOEA 4GCQA 5DL8A 1PHOA 4O4UA 1ORMA 3FYXA 2K0LA 2QEUA 2PRNA 2XMXA 3LK2A 1HXUA 4AYNA 4C69X 4AYID 2QTKA 3C1LA 1GFOA 1MPFA 2Y0KA 4JCHA 4RLCA 3V8UA 3VY8X 2GE4A 1OSMA 2M07A 3LK41 1QJ8A 2KXPB 2AF7A 3K19A 2ODJA 4N58A 2PORA 6PRNA 2Y0LA 3AA7A 4G9QA 5DL7A 4N59A 3AAAB 2W80C 1HXTA 2J1NA 5DL6A 3VE2A 1QJ9A 4GCPA 3GP6A 1Q9GA 3VZTX 4LSHA 4D64A 1KNCA 2YNKA 4FESA 3VZUX 3AAEA 3SY7A 1BH3A 2XE5A 4RL9A 4D65A 2MHLA 4E1TA 2JN8A 3BEYA 1P4TA 3DA4A 2ZFGA 3A2SX 3T20A 1GU9A 4KR8A 4AKRB 1THQA 2JMMA 4GHBA 5G26A 3JTYA 4GCSA 2OUWA 3AA0A 2O4DA 3SYSA 1ME5A 3C5OA 5FVNA 1OPFA 5IYUA 4KRAA 3NSGA 4FRXA 1VKEA 5GV0A 4B61A 1LW1A 4FSPA 4FUVA 5D5DA 1IZNA 2KZ7A 3HWBA 4U9CA 2PFXA 3DA3A 3PORA 4D5UA 1G90A 4RJWA 5DIKA 3PQUA 4Z3TA 2KC0A 4XNKA 4AYMC 4RJXA 1ZHTA 2Y2XA 3EMNX 1PRNA 2F1VA 4FZLA 5T5FA 4AYEC 4FRTA 3POQA 2XTQA 2XG6A 3VE1A 3VY9X 2XTRA 2KXPA 5PRNA 4O3XB 1GFPA 2Y0HA 4BUMX 4O3ZA 1ZHWA 3WI5A 3RBHA 2M06A 4AUIA 5AFUK 1QJPA 3AAAA 3D7IA 1BXWA 1ZHZA 3LK3B 4O3WA 4F4BA 3AA6B 1HXXA 3AA1B 3O0EA 3T24A 2XE1A 1ZHYA 2LHFA 4RLBA 2XE2A 2CWQA 3T0SA 3UU2A 4O3YA 4LSFA 3POXA 3LK2B 1YS5A 3LVYA 2X27X 4GF4A 5EE2A 4AKRA 4FZMA 4AKMA 4O49A 4FMSA 5ADXK 4E1SA 1GFMA 3AA7B 2OYOA 4FT6A 2GMYA 4AYDC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IZN B;  2KZ7 B;  2KXP A;  3LK4 2;  4AKR B;  5AFU K;  3LK2 A;  3AAA A;  5AFU L;  3AA0 A;  3LK3 B;  3AA6 B;  3AA1 B;  3AAE B;  3LK4 1;  2KXP B;  3AA7 A;  2KZ7 A;  1IZN A;  3AAA B;  3LK2 B;  3AA0 B;  4AKR A;  5ADX K;  3LK3 A;  5ADX L;  3AA6 A;  3AA1 A;  3AAE A;  3AA7 B; 
#chains in the Genus database with same CATH topology
 4QQ1 A;  1E54 A;  4G76 A;  4JFB A;  5JDP A;  4O4X A;  3SY9 A;  4C00 A;  2ERV A;  3AAE B;  3POU A;  1ZHX A;  2PRR A;  1MM4 A;  4FQE A;  2R89 A;  3WI4 A;  4LSE A;  5G39 A;  3PF1 A;  2K4T A;  3SZD A;  2AXT O;  4G75 A;  5DL5 A;  3HW9 A;  3SYB A;  4KR4 A;  2KDY A;  2IWW A;  1IZN B;  3HOE A;  5DIP A;  2YPV A;  3FYX A;  4AYN A;  1G90 A;  3VY8 X;  3V8U A;  2JQY A;  5B5E O;  1HXT A;  5DL6 A;  3VE2 A;  3GP6 A;  1Q9G A;  3VZT X;  4RL9 A;  4E1T A;  2JN8 A;  1THQ A;  5G26 A;  3JTY A;  4GCS A;  2OUW A;  2O4D A;  3SYS A;  5FVN A;  5IYU A;  3DWO X;  4KRA A;  4FRX A;  4C4V A;  4RJW A;  2R4O A;  3PQU A;  3DWN A;  2R8A A;  4RJX A;  2F1V A;  4FRT A;  4UB8 O;  2XTQ A;  2XG6 A;  2XTR A;  5PRN A;  5TIS O;  3D7I A;  1BXW A;  4O3W A;  4IL6 O;  3PGS A;  3A0B O;  4RLB A;  5G3A A;  4GF4 A;  4O49 A;  5ADX K;  3A0H O;  2GMY A;  2X9K A;  3QRA A;  4K3B A;  3HOL A;  3VZW X;  2Y7S A;  7PRN A;  4LSI A;  2IJC A;  2IWV A;  3AA0 B;  2XE3 A;  5ADX L;  3AA1 A;  1BT9 A;  4PUX A;  2FGQ X;  2WJR A;  1GFN A;  2KZ7 B;  3PQS A;  4O4U A;  2K0L A;  2QEU A;  2PRN A;  2XMX A;  3PGR A;  3C1L A;  2Y0K A;  4JCH A;  3LK4 1;  2KXP B;  1T1L A;  2ODJ A;  4N58 A;  2POR A;  5KAI O;  3AA7 A;  4G9Q A;  3AAA B;  3BRZ A;  5KAF O;  1QJ9 A;  4GCP A;  4D64 A;  1KNC A;  4FES A;  3VZU X;  3BEY A;  3DA4 A;  3A2S X;  1GU9 A;  4KR8 A;  3NSG A;  5GV0 A;  1LW1 A;  4FUV A;  2WVP A;  3DA3 A;  3POQ A;  3VE1 A;  4BUM X;  5GTH O;  1GFP A;  4O3Z A;  4CTD A;  3RBH A;  5AFU K;  1ZHZ A;  1HXX A;  3T24 A;  2XE1 A;  2LHF A;  2XE2 A;  4LSF A;  3LVY A;  4AKR A;  4FMS A;  1GFM A;  3LK4 2;  2Q0T A;  4FOZ A;  3UAQ A;  2O4V A;  2J4U P;  5AFU L;  4AFK A;  5GTI O;  2F1T A;  3TZG A;  1H6S 1;  3WU2 O;  2N2L A;  2N2M A;  3G7G A;  4XNL A;  4AZL A;  3LK3 A;  4C4V B;  1P8C A;  3AA6 A;  4GCQ A;  8PRN A;  1MM5 A;  1PHO A;  3LK2 A;  1HXU A;  4C69 X;  5H2F O;  4K3C A;  4AYI D;  4RLC A;  1GFO A;  1MPF A;  2AF7 A;  3K19 A;  4N75 A;  6PRN A;  4PJ0 O;  4LSH A;  2YNK A;  3AAE A;  3SY7 A;  2XE5 A;  4N74 A;  2ZFG A;  2JMM A;  4GHB A;  2R4N A;  1ME5 A;  1T16 A;  3C5O A;  1VKE A;  5E79 O;  4B61 A;  4FSP A;  1IZN A;  3HWB A;  4U9C A;  3POR A;  5DIK A;  4Z3T A;  4XNK A;  3EMN X;  4FZL A;  4AYE C;  3VY9 X;  4O3X B;  4AUI A;  4F4B A;  3AA1 B;  3O0E A;  2X27 X;  5EE2 A;  4AKM A;  5G38 A;  4E1S A;  3AA7 B;  2OYO A;  4AYD C;  4UB6 O;  4FZN A;  3UPG A;  3QRC A;  3KZI O;  2LFU A;  1GFQ A;  4FSO A;  2FGR A;  2OMF A;  3SZV A;  2MNH A;  3PRN A;  4PR7 A;  2ZLD A;  3KVD D;  2W81 C;  1Q9F A;  2ES9 A;  1S5L O;  5DL8 A;  1ORM A;  2F1C X;  2R4L A;  2QTK A;  2GE4 A;  1OSM A;  2M07 A;  1QJ8 A;  3BS0 A;  3BRY A;  2Y0L A;  5DL7 A;  4N59 A;  2W80 C;  2J1N A;  5B66 O;  1BH3 A;  4D65 A;  2MHL A;  1P4T A;  3T20 A;  4AKR B;  3AA0 A;  2R4P A;  3JCU O;  1OPF A;  3DZM A;  5D5D A;  2KZ7 A;  2PFX A;  4D5U A;  2KC0 A;  1ZHT A;  2R88 A;  2Y2X A;  1PRN A;  5T5F A;  2KXP A;  3NJT A;  2Y0H A;  1ZHW A;  3WI5 A;  2M06 A;  2WJQ A;  1QJP A;  3AAA A;  3LK3 B;  3AA6 B;  1ZHY A;  2CWQ A;  3T0S A;  3UU2 A;  4O3Y A;  3POX A;  3LK2 B;  1YS5 A;  4FZM A;  3PGU A;  4FT6 A;  4AYM C; 
#chains in the Genus database with same CATH homology
 4QQ1 A;  3LK4 2;  3QRA A;  1E54 A;  4G76 A;  4JFB A;  4FZN A;  2Q0T A;  4FOZ A;  3UAQ A;  2O4V A;  3QRC A;  5JDP A;  3UPG A;  2LFU A;  3HOL A;  1GFQ A;  2J4U P;  4O4X A;  5AFU L;  4AFK A;  3SY9 A;  2ERV A;  3VZW X;  3AAE B;  4FSO A;  3POU A;  2Y7S A;  2FGR A;  1ZHX A;  2OMF A;  3SZV A;  7PRN A;  2MNH A;  4LSI A;  2PRR A;  2F1T A;  1MM4 A;  2IJC A;  3PRN A;  3TZG A;  3WI4 A;  4LSE A;  1H6S 1;  3AA0 B;  2K4T A;  2ZLD A;  3SZD A;  8PRN A;  4G75 A;  3KVD D;  5DL5 A;  2N2L A;  2W81 C;  2XE3 A;  2N2M A;  3HW9 A;  3SYB A;  3G7G A;  4XNL A;  4AZL A;  4KR4 A;  3LK3 A;  5ADX L;  1P8C A;  2ES9 A;  3AA1 A;  3AA6 A;  1BT9 A;  1Q9F A;  2KDY A;  4PUX A;  2FGQ X;  3PQS A;  1GFN A;  1IZN B;  2KZ7 B;  1MM5 A;  5DIP A;  2YPV A;  3HOE A;  4GCQ A;  5DL8 A;  1PHO A;  4O4U A;  1ORM A;  3FYX A;  2K0L A;  2QEU A;  2PRN A;  2XMX A;  3LK2 A;  1HXU A;  4AYN A;  4C69 X;  4AYI D;  2QTK A;  3C1L A;  1GFO A;  1MPF A;  2Y0K A;  4JCH A;  4RLC A;  3V8U A;  3VY8 X;  2GE4 A;  1OSM A;  2M07 A;  3LK4 1;  1QJ8 A;  2KXP B;  2AF7 A;  3K19 A;  2ODJ A;  4N58 A;  2POR A;  6PRN A;  2Y0L A;  3AA7 A;  4G9Q A;  5DL7 A;  4N59 A;  3AAA B;  2W80 C;  1HXT A;  2J1N A;  5DL6 A;  3VE2 A;  1QJ9 A;  4GCP A;  3GP6 A;  1Q9G A;  3VZT X;  4LSH A;  4D64 A;  1KNC A;  2YNK A;  4FES A;  3VZU X;  3AAE A;  3SY7 A;  1BH3 A;  2XE5 A;  4RL9 A;  4D65 A;  2MHL A;  4E1T A;  2JN8 A;  3BEY A;  1P4T A;  3DA4 A;  2ZFG A;  3A2S X;  3T20 A;  1GU9 A;  4KR8 A;  4AKR B;  1THQ A;  2JMM A;  4GHB A;  5G26 A;  3JTY A;  4GCS A;  2OUW A;  3AA0 A;  2O4D A;  3SYS A;  1ME5 A;  3C5O A;  5FVN A;  1OPF A;  5IYU A;  4KRA A;  3NSG A;  4FRX A;  1VKE A;  5GV0 A;  4B61 A;  1LW1 A;  4FSP A;  4FUV A;  5D5D A;  1IZN A;  2KZ7 A;  3HWB A;  4U9C A;  2PFX A;  3DA3 A;  3POR A;  4D5U A;  1G90 A;  4RJW A;  5DIK A;  3PQU A;  4Z3T A;  2KC0 A;  4XNK A;  4AYM C;  4RJX A;  1ZHT A;  2Y2X A;  3EMN X;  1PRN A;  2F1V A;  4FZL A;  5T5F A;  4AYE C;  4FRT A;  3POQ A;  2XTQ A;  2XG6 A;  3VE1 A;  3VY9 X;  2XTR A;  2KXP A;  5PRN A;  4O3X B;  1GFP A;  2Y0H A;  4BUM X;  4O3Z A;  1ZHW A;  3WI5 A;  3RBH A;  2M06 A;  4AUI A;  5AFU K;  1QJP A;  3AAA A;  3D7I A;  1BXW A;  1ZHZ A;  3LK3 B;  4O3W A;  4F4B A;  3AA6 B;  1HXX A;  3AA1 B;  3O0E A;  3T24 A;  2XE1 A;  1ZHY A;  2LHF A;  4RLB A;  2XE2 A;  2CWQ A;  3T0S A;  3UU2 A;  4O3Y A;  4LSF A;  3POX A;  3LK2 B;  1YS5 A;  3LVY A;  2X27 X;  4GF4 A;  5EE2 A;  4AKR A;  4FZM A;  4AKM A;  4O49 A;  4FMS A;  5ADX K;  4E1S A;  1GFM A;  3AA7 B;  2OYO A;  4FT6 A;  2GMY A;  4AYD C; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...