3AA6A

Crystal structure of actin capping protein in complex with the cp-binding motif derived from cd2ap
Total Genus 87
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
270
structure length
270
Chain Sequence
b'RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords F-actin-capping protein subunit alpha-1
publication title Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
pubmed doi rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 87
structure length 270
sequence length 270
ec nomenclature
pdb deposition date 2009-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aa6A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aa6A02
3AAAA 3AA0B 3LK42 3AA7A 2KXPB 4AKRB 5AFUL 2KZ7B 3AA1A 5ADXK 3LK3B 3LK2A 1IZNA 3AA6B 3AAEB 3AAAB 3AA0A 4AKRA 3AA7B 3LK41 2KXPA 2KZ7A 5AFUK 3AA1B 3LK3A 5ADXL 3AA6A 3AAEA 3LK2B 1IZNB
chains in the Genus database with same CATH superfamily
3AAAA 5TISO 2O4DA 4O3XB 4O3ZA 3POXA 4C00A 4KRAA 4AYDC 3SZDA 3V8UA 1Q9FA 3HOEA 2K0LA 3WI5A 1ZHWA 4LSIA 1GFOA 4N74A 3A2SX 4N59A 4UB8O 2K4TA 3VE2A 2KXPB 4JFBA 4O49A 5G39A 4FT6A 4AZLA 4FZMA 4BUMX 5DL8A 2KXPA 5G26A 3LK3A 5G3AA 1P8CA 3LK2B 4O3YA 4LSHA 5FVNA 1PHOA 2LFUA 3BEYA 4AUIA 1THQA 3JTYA 4AKRA 4FZLA 3SYSA 2YPVA 3GP6A 3WI4A 2X9KA 3AA6A 4AYEC 3QRAA 5GTHO 3VZUX 1BT9A 3PGUA 2PORA 4E1SA 3KVDD 2J4UP 4AFKA 5T5FA 3A0BO 1BH3A 2WJRA 2Y0KA 3DA4A 5GTIO 1E54A 4RJXA 3AAEA 2R4OA 4C4VA 1IZNB 2JN8A 2OUWA 3AA0B 3LK42 3AA1A 5KAIO 2F1VA 2JMMA 4AKMA 4O4UA 2FGRA 5JDPA 3D7IA 4RJWA 3VZWX 4GCPA 3AAAB 3PGRA 8PRNA 3VE1A 4GCQA 4FOZA 3G7GA 1PRNA 1GFQA 1MM4A 4O4XA 4GHBA 5DIKA 3JCUO 2R4NA 4N58A 4AYMC 2ES9A 3C1LA 1GU9A 3RBHA 4K3CA 2GMYA 1HXXA 2F1CX 3VY8X 4AYID 2CWQA 3UU2A 2XTRA 3LK3B 2OYOA 1ZHXA 3HW9A 1QJ8A 2WJQA 2WVPA 1P4TA 4D65A 2KC0A 5DL5A 2ODJA 1MM5A 1ORMA 1VKEA 3DWOX 2JQYA 4KR4A 2IWWA 4AKRB 3POQA 2ZFGA 2ZLDA 5ADXK 5B66O 3AA6B 4PR7A 2M06A 3BRYA 4FUVA 4PJ0O 3LK41 3PORA 1QJPA 2IJCA 4UB6O 2OMFA 4CTDA 3KZIO 3UPGA 3DA3A 3PQUA 1KNCA 2J1NA 3QRCA 3AAEB 4PUXA 4C4VB 4K3BA 3BS0A 2O4VA 3AA1B 2Q0TA 1YS5A 3TZGA 2XE1A 4G76A 2LHFA 3BRZA 5IYUA 4IL6O 2XTQA 1G90A 2R88A 4C69X 5B5EO 1LW1A 5AFUK 1ZHZA 3T20A 1GFPA 1MPFA 3K19A 2N2MA 4FESA 1T1LA 2Y0HA 2R4PA 4RLCA 1OSMA 2XE5A 3AA7B 2KZ7A 3PQSA 5GV0A 4D64A 5ADXL 3SY7A 4XNKA 4KR8A 1ZHTA 3SZVA 2R8AA 6PRNA 5E79O 3HOLA 3AA7A 4E1TA 3EMNX 4GF4A 3NSGA 1T16A 1S5LO 1H6S1 4Z3TA 4N75A 2QEUA 3DZMA 4O3WA 4B61A 3UAQA 4QQ1A 1ZHYA 3PF1A 5G38A 2MNHA 4LSEA 5H2FO 2Y0LA 4F4BA 5EE2A 4RL9A 4D5UA 3LVYA 4LSFA 2Y7SA 3O0EA 2XG6A 2XE3A 2R89A 4FRXA 3T24A 1BXWA 2XMXA 5KAFO 2AXTO 2N2LA 4FZNA 1OPFA 2Y2XA 3C5OA 2FGQX 1GFNA 4U9CA 3POUA 4FRTA 5AFUL 3VZTX 3VY9X 2PFXA 4GCSA 4RLBA 2F1TA 4FMSA 3LK2A 5DIPA 2XE2A 7PRNA 3NJTA 1GFMA 1Q9GA 2W80C 1ME5A 3SYBA 1HXTA 1HXUA 5PRNA 4JCHA 2IWVA 3PGSA 2GE4A 5DL7A 2X27X 4XNLA 2M07A 2W81C 1QJ9A 5DL6A 4AYNA 3DWNA 4G9QA 4FQEA 2KZ7B 2MHLA 2PRNA 1IZNA 3PRNA 2KDYA 2ERVA 3FYXA 4FSPA 4FSOA 3SY9A 2PRRA 3AA0A 3A0HO 2R4LA 2QTKA 5D5DA 2YNKA 2AF7A 3HWBA 3T0SA 4G75A 3WU2O
chains in the Genus database with same CATH topology
3AAAA 2OMFA 1ZHYA 2JN8A 2MNHA 4LSEA 2OUWA 2O4DA 3AA0B 3LK42 4O3XB 2Y0LA 3UPGA 4O3ZA 3AA1A 2F1VA 2JMMA 3POXA 4KRAA 5EE2A 4AKMA 4F4BA 4O4UA 2FGRA 3DA3A 4RL9A 4AYDC 3PQUA 1KNCA 5JDPA 4D5UA 3SZDA 3V8UA 1Q9FA 3D7IA 3LVYA 2J1NA 2Y7SA 3HOEA 3QRCA 3O0EA 4LSFA 3AAEB 2K0LA 4PUXA 4RJWA 2XG6A 4GCPA 3AAAB 3VZWX 3WI5A 2XE3A 4FRXA 3T24A 1BXWA 1ZHWA 2XMXA 2O4VA 8PRNA 4LSIA 2N2LA 3AA1B 4FZNA 1GFOA 2Q0TA 3VE1A 1YS5A 4RJXA 3TZGA 2XE1A 1OPFA 4G76A 4GCQA 4FOZA 3G7GA 1PRNA 3A2SX 2LHFA 1GFQA 1MM4A 4N59A 5IYUA 2Y2XA 3C5OA 2FGQX 1GFNA 2XTQA 4O4XA 2K4TA 3VE2A 4U9CA 2KXPB 3POUA 4FRTA 5AFUL 3VZTX 4GHBA 3VY9X 4JFBA 1G90A 5DIKA 4O49A 2PFXA 4GCSA 4FT6A 4RLBA 4AZLA 2F1TA 4C69X 4FZMA 4FMSA 3LK2A 5DIPA 4N58A 4BUMX 1LW1A 2XE2A 7PRNA 4AYMC 2ES9A 3C1LA 5DL8A 2KXPA 5AFUK 1ZHZA 3T20A 1GFPA 1MPFA 5G26A 3LK3A 1GFMA 1Q9GA 1P8CA 1GU9A 3LK2B 3K19A 4O3YA 4LSHA 2W80C 3RBHA 1ME5A 5FVNA 2N2MA 1PHOA 2LFUA 4FESA 2GMYA 3SYBA 3BEYA 4AUIA 1HXXA 1HXTA 3VY8X 4AYID 2Y0HA 1THQA 3UAQA 2CWQA 3UU2A 2XTRA 3LK3B 2OYOA 1HXUA 5PRNA 1ZHXA 3HW9A 4JCHA 4RLCA 3JTYA 1QJ8A 4AKRA 1OSMA 2XE5A 2YPVA 3AA7B 4FZLA 3SYSA 2KZ7A 3GP6A 2GE4A 1P4TA 3PQSA 5DL7A 2X27X 2KC0A 4XNLA 2ODJA 1MM5A 5DL5A 2M07A 4D65A 2W81C 5GV0A 4D64A 1QJ9A 1ORMA 3WI4A 1VKEA 3SY7A 5ADXL 4AYEC 3AA6A 3QRAA 4KR8A 1ZHTA 4XNKA 3SZVA 3VZUX 1BT9A 4KR4A 5DL6A 6PRNA 4AYNA 4G9QA 3HOLA 2PORA 3AA7A 4E1SA 4AKRB 3KVDD 2J4UP 2KZ7B 2MHLA 4E1TA 3EMNX 3POQA 4AFKA 2ZFGA 4GF4A 2ZLDA 3NSGA 5ADXK 5T5FA 2PRNA 1IZNA 3AA6B 3PRNA 2KDYA 2ERVA 3FYXA 4FSPA 1H6S1 4FSOA 3SY9A 4Z3TA 2M06A 2PRRA 3AA0A 4FUVA 1BH3A 2QTKA 5D5DA 2YNKA 2AF7A 3LK41 2QEUA 3HWBA 3T0SA 4G75A 2Y0KA 3PORA 3DA4A 4O3WA 1QJPA 4B61A 1E54A 2IJCA 3AAEA 1IZNB 4QQ1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AAA A;  3AA0 B;  3LK4 2;  3AA7 A;  2KXP B;  4AKR B;  5AFU L;  2KZ7 B;  3AA1 A;  5ADX K;  3LK3 B;  3LK2 A;  1IZN A;  3AA6 B;  3AAE B;  3AAA B;  3AA0 A;  4AKR A;  3AA7 B;  3LK4 1;  2KXP A;  2KZ7 A;  5AFU K;  3AA1 B;  3LK3 A;  5ADX L;  3AA6 A;  3AAE A;  3LK2 B;  1IZN B; 
#chains in the Genus database with same CATH topology
 3AAA A;  5TIS O;  2O4D A;  4O3X B;  4O3Z A;  3POX A;  4C00 A;  4KRA A;  4AYD C;  3SZD A;  3V8U A;  1Q9F A;  3HOE A;  2K0L A;  3WI5 A;  1ZHW A;  4LSI A;  1GFO A;  4N74 A;  3A2S X;  4N59 A;  4UB8 O;  2K4T A;  3VE2 A;  2KXP B;  4JFB A;  4O49 A;  5G39 A;  4FT6 A;  4AZL A;  4FZM A;  4BUM X;  5DL8 A;  2KXP A;  5G26 A;  3LK3 A;  5G3A A;  1P8C A;  3LK2 B;  4O3Y A;  4LSH A;  5FVN A;  1PHO A;  2LFU A;  3BEY A;  4AUI A;  1THQ A;  3JTY A;  4AKR A;  4FZL A;  3SYS A;  2YPV A;  3GP6 A;  3WI4 A;  2X9K A;  3AA6 A;  4AYE C;  3QRA A;  5GTH O;  3VZU X;  1BT9 A;  3PGU A;  2POR A;  4E1S A;  3KVD D;  2J4U P;  4AFK A;  5T5F A;  3A0B O;  1BH3 A;  2WJR A;  2Y0K A;  3DA4 A;  5GTI O;  1E54 A;  4RJX A;  3AAE A;  2R4O A;  4C4V A;  1IZN B;  2JN8 A;  2OUW A;  3AA0 B;  3LK4 2;  3AA1 A;  5KAI O;  2F1V A;  2JMM A;  4AKM A;  4O4U A;  2FGR A;  5JDP A;  3D7I A;  4RJW A;  3VZW X;  4GCP A;  3AAA B;  3PGR A;  8PRN A;  3VE1 A;  4GCQ A;  4FOZ A;  3G7G A;  1PRN A;  1GFQ A;  1MM4 A;  4O4X A;  4GHB A;  5DIK A;  3JCU O;  2R4N A;  4N58 A;  4AYM C;  2ES9 A;  3C1L A;  1GU9 A;  3RBH A;  4K3C A;  2GMY A;  1HXX A;  2F1C X;  3VY8 X;  4AYI D;  2CWQ A;  3UU2 A;  2XTR A;  3LK3 B;  2OYO A;  1ZHX A;  3HW9 A;  1QJ8 A;  2WJQ A;  2WVP A;  1P4T A;  4D65 A;  2KC0 A;  5DL5 A;  2ODJ A;  1MM5 A;  1ORM A;  1VKE A;  3DWO X;  2JQY A;  4KR4 A;  2IWW A;  4AKR B;  3POQ A;  2ZFG A;  2ZLD A;  5ADX K;  5B66 O;  3AA6 B;  4PR7 A;  2M06 A;  3BRY A;  4FUV A;  4PJ0 O;  3LK4 1;  3POR A;  1QJP A;  2IJC A;  4UB6 O;  2OMF A;  4CTD A;  3KZI O;  3UPG A;  3DA3 A;  3PQU A;  1KNC A;  2J1N A;  3QRC A;  3AAE B;  4PUX A;  4C4V B;  4K3B A;  3BS0 A;  2O4V A;  3AA1 B;  2Q0T A;  1YS5 A;  3TZG A;  2XE1 A;  4G76 A;  2LHF A;  3BRZ A;  5IYU A;  4IL6 O;  2XTQ A;  1G90 A;  2R88 A;  4C69 X;  5B5E O;  1LW1 A;  5AFU K;  1ZHZ A;  3T20 A;  1GFP A;  1MPF A;  3K19 A;  2N2M A;  4FES A;  1T1L A;  2Y0H A;  2R4P A;  4RLC A;  1OSM A;  2XE5 A;  3AA7 B;  2KZ7 A;  3PQS A;  5GV0 A;  4D64 A;  5ADX L;  3SY7 A;  4XNK A;  4KR8 A;  1ZHT A;  3SZV A;  2R8A A;  6PRN A;  5E79 O;  3HOL A;  3AA7 A;  4E1T A;  3EMN X;  4GF4 A;  3NSG A;  1T16 A;  1S5L O;  1H6S 1;  4Z3T A;  4N75 A;  2QEU A;  3DZM A;  4O3W A;  4B61 A;  3UAQ A;  4QQ1 A;  1ZHY A;  3PF1 A;  5G38 A;  2MNH A;  4LSE A;  5H2F O;  2Y0L A;  4F4B A;  5EE2 A;  4RL9 A;  4D5U A;  3LVY A;  4LSF A;  2Y7S A;  3O0E A;  2XG6 A;  2XE3 A;  2R89 A;  4FRX A;  3T24 A;  1BXW A;  2XMX A;  5KAF O;  2AXT O;  2N2L A;  4FZN A;  1OPF A;  2Y2X A;  3C5O A;  2FGQ X;  1GFN A;  4U9C A;  3POU A;  4FRT A;  5AFU L;  3VZT X;  3VY9 X;  2PFX A;  4GCS A;  4RLB A;  2F1T A;  4FMS A;  3LK2 A;  5DIP A;  2XE2 A;  7PRN A;  3NJT A;  1GFM A;  1Q9G A;  2W80 C;  1ME5 A;  3SYB A;  1HXT A;  1HXU A;  5PRN A;  4JCH A;  2IWV A;  3PGS A;  2GE4 A;  5DL7 A;  2X27 X;  4XNL A;  2M07 A;  2W81 C;  1QJ9 A;  5DL6 A;  4AYN A;  3DWN A;  4G9Q A;  4FQE A;  2KZ7 B;  2MHL A;  2PRN A;  1IZN A;  3PRN A;  2KDY A;  2ERV A;  3FYX A;  4FSP A;  4FSO A;  3SY9 A;  2PRR A;  3AA0 A;  3A0H O;  2R4L A;  2QTK A;  5D5D A;  2YNK A;  2AF7 A;  3HWB A;  3T0S A;  4G75 A;  3WU2 O; 
#chains in the Genus database with same CATH homology
 3AAA A;  2OMF A;  1ZHY A;  2JN8 A;  2MNH A;  4LSE A;  2OUW A;  2O4D A;  3AA0 B;  3LK4 2;  4O3X B;  2Y0L A;  3UPG A;  4O3Z A;  3AA1 A;  2F1V A;  2JMM A;  3POX A;  4KRA A;  5EE2 A;  4AKM A;  4F4B A;  4O4U A;  2FGR A;  3DA3 A;  4RL9 A;  4AYD C;  3PQU A;  1KNC A;  5JDP A;  4D5U A;  3SZD A;  3V8U A;  1Q9F A;  3D7I A;  3LVY A;  2J1N A;  2Y7S A;  3HOE A;  3QRC A;  3O0E A;  4LSF A;  3AAE B;  2K0L A;  4PUX A;  4RJW A;  2XG6 A;  4GCP A;  3AAA B;  3VZW X;  3WI5 A;  2XE3 A;  4FRX A;  3T24 A;  1BXW A;  1ZHW A;  2XMX A;  2O4V A;  8PRN A;  4LSI A;  2N2L A;  3AA1 B;  4FZN A;  1GFO A;  2Q0T A;  3VE1 A;  1YS5 A;  4RJX A;  3TZG A;  2XE1 A;  1OPF A;  4G76 A;  4GCQ A;  4FOZ A;  3G7G A;  1PRN A;  3A2S X;  2LHF A;  1GFQ A;  1MM4 A;  4N59 A;  5IYU A;  2Y2X A;  3C5O A;  2FGQ X;  1GFN A;  2XTQ A;  4O4X A;  2K4T A;  3VE2 A;  4U9C A;  2KXP B;  3POU A;  4FRT A;  5AFU L;  3VZT X;  4GHB A;  3VY9 X;  4JFB A;  1G90 A;  5DIK A;  4O49 A;  2PFX A;  4GCS A;  4FT6 A;  4RLB A;  4AZL A;  2F1T A;  4C69 X;  4FZM A;  4FMS A;  3LK2 A;  5DIP A;  4N58 A;  4BUM X;  1LW1 A;  2XE2 A;  7PRN A;  4AYM C;  2ES9 A;  3C1L A;  5DL8 A;  2KXP A;  5AFU K;  1ZHZ A;  3T20 A;  1GFP A;  1MPF A;  5G26 A;  3LK3 A;  1GFM A;  1Q9G A;  1P8C A;  1GU9 A;  3LK2 B;  3K19 A;  4O3Y A;  4LSH A;  2W80 C;  3RBH A;  1ME5 A;  5FVN A;  2N2M A;  1PHO A;  2LFU A;  4FES A;  2GMY A;  3SYB A;  3BEY A;  4AUI A;  1HXX A;  1HXT A;  3VY8 X;  4AYI D;  2Y0H A;  1THQ A;  3UAQ A;  2CWQ A;  3UU2 A;  2XTR A;  3LK3 B;  2OYO A;  1HXU A;  5PRN A;  1ZHX A;  3HW9 A;  4JCH A;  4RLC A;  3JTY A;  1QJ8 A;  4AKR A;  1OSM A;  2XE5 A;  2YPV A;  3AA7 B;  4FZL A;  3SYS A;  2KZ7 A;  3GP6 A;  2GE4 A;  1P4T A;  3PQS A;  5DL7 A;  2X27 X;  2KC0 A;  4XNL A;  2ODJ A;  1MM5 A;  5DL5 A;  2M07 A;  4D65 A;  2W81 C;  5GV0 A;  4D64 A;  1QJ9 A;  1ORM A;  3WI4 A;  1VKE A;  3SY7 A;  5ADX L;  4AYE C;  3AA6 A;  3QRA A;  4KR8 A;  1ZHT A;  4XNK A;  3SZV A;  3VZU X;  1BT9 A;  4KR4 A;  5DL6 A;  6PRN A;  4AYN A;  4G9Q A;  3HOL A;  2POR A;  3AA7 A;  4E1S A;  4AKR B;  3KVD D;  2J4U P;  2KZ7 B;  2MHL A;  4E1T A;  3EMN X;  3POQ A;  4AFK A;  2ZFG A;  4GF4 A;  2ZLD A;  3NSG A;  5ADX K;  5T5F A;  2PRN A;  1IZN A;  3AA6 B;  3PRN A;  2KDY A;  2ERV A;  3FYX A;  4FSP A;  1H6S 1;  4FSO A;  3SY9 A;  4Z3T A;  2M06 A;  2PRR A;  3AA0 A;  4FUV A;  1BH3 A;  2QTK A;  5D5D A;  2YNK A;  2AF7 A;  3LK4 1;  2QEU A;  3HWB A;  3T0S A;  4G75 A;  2Y0K A;  3POR A;  3DA4 A;  4O3W A;  1QJP A;  4B61 A;  1E54 A;  2IJC A;  3AAE A;  1IZN B;  4QQ1 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...