1ME5A

Crystal structure of mycobacterium tuberculosis alkylperoxidase ahpd h132q mutant
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
173
structure length
173
Chain Sequence
b'IEKLKAALPEYAKDIKLNLSSITRSSVLDQEQLWGTLLASAAATRNPQVLADIGAEATDHLSAAARHAALGAAAIMGMNNVFYRGRGFLEGRYDDLRPGLRMNIIANPGIPKANFELWSFAVSAINGCSQCLVAHEHTLRTVGVDREAIFEALKAAAIVSGVAQALATIEALS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ALKYLHYDROPEROXIDASE D
publication title The mechanism of Mycobacterium tuberculosis alkylhydroperoxidase AhpD as defined by mutagenesis, crystallography, and kinetics.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Oxidoreductase
total genus 57
structure length 173
sequence length 173
chains with identical sequence B, C
ec nomenclature ec 1.11.1.15: Peroxiredoxin.
pdb deposition date 2002-08-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 1me5A00
2AF7A 2Q0TA 2QEUA 2OUWA 5DIPA 1GU9A 1LW1A 2IJCA 3LVYA 3D7IA 4G9QA 3BEYA 1ME5A 2O4DA 1VKEA 5DIKA 1P8CA 2CWQA 3C1LA 1KNCA 2PFXA 2PRRA 2OYOA 2GMYA
chains in the Genus database with same CATH superfamily
2AF7A 2Q0TA 2OUWA 2QEUA 5DIPA 1GU9A 1LW1A 2ES9A 3AAAA 2KXPA 3AA1A 3LK41 2IJCA 3LVYA 3D7IA 4G9QA 3AA7A 3BEYA 5ADXK 1ME5A 3AAEA 2O4DA 3LK2A 1IZNA 2JN8A 3AA6A 2KZ7A 3LK3A 1VKEA 5DIKA 1P8CA 2CWQA 3C1LA 5AFUK 3AA0A 1KNCA 2PFXA 2PRRA 4AKRA 2OYOA 2GMYA
chains in the Genus database with same CATH topology
2AF7A 2Q0TA 2OUWA 2QEUA 5DIPA 1GU9A 1LW1A 2ES9A 3AAAA 2KXPA 3AA1A 3LK41 2IJCA 3LVYA 3D7IA 4G9QA 3AA7A 3BEYA 5ADXK 1ME5A 3AAEA 2O4DA 3LK2A 1IZNA 2JN8A 3AA6A 2KZ7A 3LK3A 1VKEA 5DIKA 1P8CA 2CWQA 3C1LA 5AFUK 3AA0A 1KNCA 2PFXA 2PRRA 4AKRA 2OYOA 2GMYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AF7 A;  2Q0T A;  2QEU A;  2OUW A;  5DIP A;  1GU9 A;  1LW1 A;  2IJC A;  3LVY A;  3D7I A;  4G9Q A;  3BEY A;  1ME5 A;  2O4D A;  1VKE A;  5DIK A;  1P8C A;  2CWQ A;  3C1L A;  1KNC A;  2PFX A;  2PRR A;  2OYO A;  2GMY A; 
#chains in the Genus database with same CATH topology
 2AF7 A;  2Q0T A;  2OUW A;  2QEU A;  5DIP A;  1GU9 A;  1LW1 A;  2ES9 A;  3AAA A;  2KXP A;  3AA1 A;  3LK4 1;  2IJC A;  3LVY A;  3D7I A;  4G9Q A;  3AA7 A;  3BEY A;  5ADX K;  1ME5 A;  3AAE A;  2O4D A;  3LK2 A;  1IZN A;  2JN8 A;  3AA6 A;  2KZ7 A;  3LK3 A;  1VKE A;  5DIK A;  1P8C A;  2CWQ A;  3C1L A;  5AFU K;  3AA0 A;  1KNC A;  2PFX A;  2PRR A;  4AKR A;  2OYO A;  2GMY A; 
#chains in the Genus database with same CATH homology
 2AF7 A;  2Q0T A;  2OUW A;  2QEU A;  5DIP A;  1GU9 A;  1LW1 A;  2ES9 A;  3AAA A;  2KXP A;  3AA1 A;  3LK4 1;  2IJC A;  3LVY A;  3D7I A;  4G9Q A;  3AA7 A;  3BEY A;  5ADX K;  1ME5 A;  3AAE A;  2O4D A;  3LK2 A;  1IZN A;  2JN8 A;  3AA6 A;  2KZ7 A;  3LK3 A;  1VKE A;  5DIK A;  1P8C A;  2CWQ A;  3C1L A;  5AFU K;  3AA0 A;  1KNC A;  2PFX A;  2PRR A;  4AKR A;  2OYO A;  2GMY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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