2CWQA

Crystal structure of conserved protein ttha0727 from thermus thermophilus hb8
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
126
structure length
126
Chain Sequence
SGLVPRGSHMDRTHERVLQAMAENLGEGLPRAIPLLAEKAPGLLLEHGRSWTYAMPEKGALDEKTRTLILLGIALATGSEACVKAMAHRAKRLGLSKEALLETLKIARQAQANAVLGHAAPLLEVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords hypothetical protein TTHA0727
publication title Crystal structure of the conserved protein TTHA0727 from Thermus thermophilus HB8 at 1.9 A resolution: A CMD family member distinct from carboxymuconolactone decarboxylase (CMD) and AhpD
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Structural genomics, unknown function
total genus 42
structure length 126
sequence length 126
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2005-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2cwqA00
2CWQA 3BEYA 3LVYA 1GU9A 2OYOA 1KNCA 2IJCA 1LW1A 2Q0TA 2O4DA 2GMYA 2QEUA 2AF7A 5DIPA 1P8CA 5DIKA 2PFXA 3C1LA 4G9QA 2OUWA 2PRRA 1ME5A 1VKEA 3D7IA
chains in the Genus database with same CATH superfamily
2CWQA 3BEYA 3LVYA 3AAAA 2ES9A 1GU9A 2OYOA 1KNCA 2IJCA 1LW1A 3LK3A 2Q0TA 2O4DA 2KXPA 3LK2A 3AA0A 2GMYA 2QEUA 4AKRA 1IZNA 2AF7A 5DIPA 1P8CA 5AFUK 2KZ7A 3AA1A 5DIKA 2PFXA 3AAEA 3C1LA 2JN8A 2OUWA 4G9QA 5ADXK 2PRRA 1ME5A 3LK41 1VKEA 3AA7A 3D7IA 3AA6A
chains in the Genus database with same CATH topology
2CWQA 3BEYA 3LVYA 3AAAA 2ES9A 1GU9A 2OYOA 1KNCA 2IJCA 1LW1A 3LK3A 2Q0TA 2O4DA 2KXPA 3LK2A 3AA0A 2GMYA 2QEUA 4AKRA 1IZNA 2AF7A 5DIPA 1P8CA 5AFUK 2KZ7A 3AA1A 5DIKA 2PFXA 3AAEA 3C1LA 2JN8A 2OUWA 4G9QA 5ADXK 2PRRA 1ME5A 3LK41 1VKEA 3AA7A 3D7IA 3AA6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CWQ A;  3BEY A;  3LVY A;  1GU9 A;  2OYO A;  1KNC A;  2IJC A;  1LW1 A;  2Q0T A;  2O4D A;  2GMY A;  2QEU A;  2AF7 A;  5DIP A;  1P8C A;  5DIK A;  2PFX A;  3C1L A;  4G9Q A;  2OUW A;  2PRR A;  1ME5 A;  1VKE A;  3D7I A; 
#chains in the Genus database with same CATH topology
 2CWQ A;  3BEY A;  3LVY A;  3AAA A;  2ES9 A;  1GU9 A;  2OYO A;  1KNC A;  2IJC A;  1LW1 A;  3LK3 A;  2Q0T A;  2O4D A;  2KXP A;  3LK2 A;  3AA0 A;  2GMY A;  2QEU A;  4AKR A;  1IZN A;  2AF7 A;  5DIP A;  1P8C A;  5AFU K;  2KZ7 A;  3AA1 A;  5DIK A;  2PFX A;  3AAE A;  3C1L A;  2JN8 A;  2OUW A;  4G9Q A;  5ADX K;  2PRR A;  1ME5 A;  3LK4 1;  1VKE A;  3AA7 A;  3D7I A;  3AA6 A; 
#chains in the Genus database with same CATH homology
 2CWQ A;  3BEY A;  3LVY A;  3AAA A;  2ES9 A;  1GU9 A;  2OYO A;  1KNC A;  2IJC A;  1LW1 A;  3LK3 A;  2Q0T A;  2O4D A;  2KXP A;  3LK2 A;  3AA0 A;  2GMY A;  2QEU A;  4AKR A;  1IZN A;  2AF7 A;  5DIP A;  1P8C A;  5AFU K;  2KZ7 A;  3AA1 A;  5DIK A;  2PFX A;  3AAE A;  3C1L A;  2JN8 A;  2OUW A;  4G9Q A;  5ADX K;  2PRR A;  1ME5 A;  3LK4 1;  1VKE A;  3AA7 A;  3D7I A;  3AA6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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