2CWQA

Crystal structure of conserved protein ttha0727 from thermus thermophilus hb8
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
126
structure length
126
Chain Sequence
b'SGLVPRGSHMDRTHERVLQAMAENLGEGLPRAIPLLAEKAPGLLLEHGRSWTYAMPEKGALDEKTRTLILLGIALATGSEACVKAMAHRAKRLGLSKEALLETLKIARQAQANAVLGHAAPLLEVL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords hypothetical protein TTHA0727
publication title Crystal structure of the conserved protein TTHA0727 from Thermus thermophilus HB8 at 1.9 A resolution: A CMD family member distinct from carboxymuconolactone decarboxylase (CMD) and AhpD
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Structural genomics, unknown function
total genus 42
structure length 126
sequence length 126
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2005-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2cwqA00
2PRRA 2Q0TA 3C1LA 3BEYA 4G9QA 1P8CA 5DIPA 2AF7A 2PFXA 2O4DA 2QEUA 2IJCA 2CWQA 1VKEA 2OUWA 1GU9A 1LW1A 2GMYA 2OYOA 1KNCA 5DIKA 1ME5A 3LVYA 3D7IA
chains in the Genus database with same CATH superfamily
4AKRA 2PRRA 2KXPA 2Q0TA 3AA7A 3LK41 3C1LA 3BEYA 3LK2A 1P8CA 4G9QA 5AFUK 5DIPA 3AA6A 2AF7A 2PFXA 5ADXK 3AA1A 2O4DA 2QEUA 2IJCA 2CWQA 1VKEA 3LK3A 2ES9A 2OUWA 1GU9A 3AAAA 3AAEA 2JN8A 1LW1A 3AA0A 2GMYA 2OYOA 1KNCA 5DIKA 1ME5A 3LVYA 2KZ7A 1IZNA 3D7IA
chains in the Genus database with same CATH topology
4AKRA 2PRRA 2KXPA 2Q0TA 3AA7A 3LK41 3C1LA 3BEYA 3LK2A 1P8CA 4G9QA 5AFUK 5DIPA 3AA6A 2AF7A 2PFXA 5ADXK 3AA1A 2O4DA 2QEUA 2IJCA 2CWQA 1VKEA 3LK3A 2ES9A 2OUWA 1GU9A 3AAAA 3AAEA 2JN8A 1LW1A 3AA0A 2GMYA 2OYOA 1KNCA 5DIKA 1ME5A 3LVYA 2KZ7A 1IZNA 3D7IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PRR A;  2Q0T A;  3C1L A;  3BEY A;  4G9Q A;  1P8C A;  5DIP A;  2AF7 A;  2PFX A;  2O4D A;  2QEU A;  2IJC A;  2CWQ A;  1VKE A;  2OUW A;  1GU9 A;  1LW1 A;  2GMY A;  2OYO A;  1KNC A;  5DIK A;  1ME5 A;  3LVY A;  3D7I A; 
#chains in the Genus database with same CATH topology
 4AKR A;  2PRR A;  2KXP A;  2Q0T A;  3AA7 A;  3LK4 1;  3C1L A;  3BEY A;  3LK2 A;  1P8C A;  4G9Q A;  5AFU K;  5DIP A;  3AA6 A;  2AF7 A;  2PFX A;  5ADX K;  3AA1 A;  2O4D A;  2QEU A;  2IJC A;  2CWQ A;  1VKE A;  3LK3 A;  2ES9 A;  2OUW A;  1GU9 A;  3AAA A;  3AAE A;  2JN8 A;  1LW1 A;  3AA0 A;  2GMY A;  2OYO A;  1KNC A;  5DIK A;  1ME5 A;  3LVY A;  2KZ7 A;  1IZN A;  3D7I A; 
#chains in the Genus database with same CATH homology
 4AKR A;  2PRR A;  2KXP A;  2Q0T A;  3AA7 A;  3LK4 1;  3C1L A;  3BEY A;  3LK2 A;  1P8C A;  4G9Q A;  5AFU K;  5DIP A;  3AA6 A;  2AF7 A;  2PFX A;  5ADX K;  3AA1 A;  2O4D A;  2QEU A;  2IJC A;  2CWQ A;  1VKE A;  3LK3 A;  2ES9 A;  2OUW A;  1GU9 A;  3AAA A;  3AAE A;  2JN8 A;  1LW1 A;  3AA0 A;  2GMY A;  2OYO A;  1KNC A;  5DIK A;  1ME5 A;  3LVY A;  2KZ7 A;  1IZN A;  3D7I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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