4AKRA

Crystal structure of the cytoplasmic actin capping protein cap32_34 from dictyostelium discoideum
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
269
structure length
269
Chain Sequence
ASNQELVQIATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSVQTSKGSALITKEGEISNNEYLDPKNKQVITYDHIKQEVTGERSASGEIEQDIEQYRAAFDEEATKYCNEYYPNGVSAVYGTKVSEGIKITVCISTCIYKPNAFYSGRWRSVWTCTFKPGSGNVTSNGKVQVNVHYFEDGNVQLNTVTQKQTTSPSADAQSTAVNAFKAIGKAELNLHTALDNNYSTMGDTTFKALRRALPINRTKINWQKV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA
publication title Conservation and Divergence between Cytoplasmic and Muscle-Specific Actin Capping Proteins: Insights from the Crystal Structure of Cytoplasmic CAP32/34 from Dictyostelium Discoideum.
pubmed doi rcsb
source organism Dictyostelium discoideum
molecule tags Actin-binding protein
total genus 80
structure length 269
sequence length 269
chains with identical sequence C
ec nomenclature
pdb deposition date 2012-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 4akrA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 4akrA02
5AFUK 2KZ7A 5ADXK 3AAEB 3AA7A 3AA1B 3LK2A 2KXPB 3AA0A 4AKRA 3LK3A 3AA6A 5ADXL 2KZ7B 5AFUL 3AAAA 3AA7B 3AA0B 3LK2B 3LK42 1IZNA 4AKRB 3LK3B 3LK41 3AA6B 3AAAB 3AAEA 3AA1A 2KXPA 1IZNB
chains in the Genus database with same CATH superfamily
4BUMX 2M07A 2KZ7A 3DWOX 3PQUA 2KXPB 1KNCA 1E54A 2J4UP 5DL6A 2FGRA 5AFUL 3SZDA 3VZWX 2KC0A 2R8AA 4G76A 3BRYA 1LW1A 3VZUX 3SYSA 1GFPA 1ORMA 1GU9A 4AYMC 2XTRA 5H2FO 4KR8A 2F1CX 3BS0A 5TISO 2N2MA 4O4XA 2OYOA 4F4BA 2Y7SA 2JN8A 4GCSA 4N74A 1ZHWA 5IYUA 4D64A 5JDPA 3T24A 3SZVA 3PRNA 1T16A 1YS5A 2ERVA 4O3ZA 1S5LO 4PUXA 4JCHA 3NJTA 3AA0A 4O3WA 3PF1A 2R4NA 5B5EO 3AA7B 1HXXA 3AA0B 3LVYA 3VY9X 2R4OA 2WJQA 3K19A 5G39A 6PRNA 2LFUA 1HXUA 3PGSA 3LK41 2IWVA 3AAEA 5DL5A 2QTKA 3PGUA 1VKEA 4AYID 1P4TA 4GHBA 5ADXK 3HOLA 4JFBA 1GFOA 4FZLA 5ADXL 4QQ1A 2KZ7B 4K3CA 2CWQA 3JCUO 4O4UA 3A0BO 3UU2A 2GMYA 2XMXA 1T1LA 2Q0TA 3HW9A 3VE2A 2R4LA 4FZNA 2IWWA 3V8UA 2ODJA 4GF4A 2GE4A 2AF7A 2FGQX 3DWNA 2PRNA 2WJRA 3POXA 5GTHO 4GCPA 4FRXA 3KZIO 4AZLA 3KVDD 4D5UA 1MPFA 2IJCA 4N75A 1H6S1 5PRNA 5DL7A 1ME5A 2O4VA 2M06A 2QEUA 3PORA 2OUWA 1OSMA 3C1LA 5GV0A 4GCQA 2ES9A 3LK3A 3AA6A 3RBHA 3HOEA 5EE2A 4AYNA 4RJWA 3VY8X 4G75A 4Z3TA 5G38A 2R88A 1QJ8A 2XTQA 3LK3B 3AA6B 5DIPA 2ZLDA 3SY9A 2XE2A 5D5DA 3A2SX 2WVPA 5G26A 3EMNX 2LHFA 3QRAA 5DL8A 2F1TA 5KAIO 3WI5A 3GP6A 4UB8O 4AKRA 2YPVA 3DZMA 4AUIA 4XNKA 2OMFA 4AFKA 4FRTA 4C69X 4AKRB 4E1SA 3A0HO 4AKMA 4LSIA 4RL9A 3POUA 3AA1A 5FVNA 4RJXA 3UPGA 3SY7A 5B66O 3WU2O 3AA1B 2W80C 7PRNA 3POQA 4K3BA 3QRCA 2Y0KA 3LK42 4O3XB 1IZNA 3NSGA 4XNLA 4O3YA 4RLCA 4FT6A 4FMSA 1ZHXA 1IZNB 3FYXA 1PRNA 3AAEB 3LK2A 4AYDC 2MHLA 4PR7A 3D7IA 2AXTO 4FESA 4FSPA 4N58A 1BH3A 2KDYA 3VE1A 3G7GA 4FUVA 1OPFA 2KXPA 3T0SA 1PHOA 2PFXA 4LSEA 1HXTA 5AFUK 4FZMA 2Y0LA 1ZHTA 1QJ9A 4AYEC 3JTYA 4C00A 5GTIO 3HWBA 3PGRA 4LSFA 4KRAA 4PJ0O 4FSOA 4B61A 1P8CA 2X27X 5T5FA 4G9QA 3PQSA 3BRZA 2X9KA 2XE5A 1BXWA 5G3AA 2PORA 2MNHA 2XG6A 2XE1A 2N2LA 1ZHZA 2ZFGA 4LSHA 3UAQA 2R89A 1GFQA 4O49A 2K4TA 2JQYA 2YNKA 4IL6O 1THQA 2K0LA 2R4PA 1Q9GA 4CTDA 1BT9A 3O0EA 3C5OA 1MM5A 4C4VA 3BEYA 3AAAA 2J1NA 2JMMA 4FOZA 4C4VB 2Y2XA 3AAAB 3VZTX 3DA4A 3DA3A 4KR4A 3SYBA 3AA7A 5E79O 4U9CA 2F1VA 4E1TA 4RLBA 5KAFO 3T20A 2W81C 4D65A 8PRNA 1GFNA 3WI4A 1QJPA 1Q9FA 2PRRA 4UB6O 4N59A 1GFMA 2XE3A 2Y0HA 3TZGA 5DIKA 1G90A 2O4DA 1ZHYA 3LK2B 4FQEA 1MM4A
chains in the Genus database with same CATH topology
3PQSA 3K19A 3EMNX 2LHFA 4BUMX 2M07A 2KZ7A 2XE5A 3QRAA 3PQUA 1BXWA 5DL8A 2F1TA 3WI5A 2KXPB 1KNCA 1E54A 6PRNA 3GP6A 2J4UP 5DL6A 2PORA 4AKRA 2MNHA 2XG6A 2YPVA 2FGRA 5AFUL 2XE1A 4AUIA 4XNKA 2LFUA 2N2LA 1ZHZA 1HXUA 3SZDA 2ZFGA 4LSHA 3UAQA 2OMFA 4AFKA 4FRTA 4C69X 1GFQA 3VZWX 4O49A 2K4TA 4AKRB 3LK41 2YNKA 4LSIA 4AKMA 4E1SA 2KC0A 1THQA 4RL9A 3AAEA 5DL5A 2QTKA 2K0LA 3POUA 1Q9GA 4G76A 3AA1A 5FVNA 1VKEA 4RJXA 4AYID 1P4TA 4GHBA 5ADXK 3UPGA 1BT9A 3SY7A 3HOLA 3O0EA 4JFBA 3AA1B 2W80C 1GFOA 4FZLA 7PRNA 3C5OA 3POQA 1LW1A 3VZUX 3SYSA 3QRCA 1GFPA 1MM5A 5ADXL 4QQ1A 1ORMA 2KZ7B 3BEYA 3AAAA 2Y0KA 2J1NA 2JMMA 1GU9A 4AYMC 2CWQA 3LK42 4FOZA 2XTRA 4O4UA 4O3XB 1IZNA 3NSGA 3UU2A 4XNLA 4O3YA 4KR8A 2Y2XA 3AAAB 4FT6A 4RLCA 4FMSA 1ZHXA 3VZTX 2GMYA 2N2MA 3DA4A 3DA3A 2XMXA 1IZNB 3FYXA 4O4XA 2OYOA 4F4BA 2Q0TA 3HW9A 3VE2A 1PRNA 4FZNA 4KR4A 2Y7SA 3SYBA 3AAEB 3AA7A 2JN8A 4GCSA 2F1VA 4U9CA 3LK2A 3V8UA 4E1TA 4AYDC 4RLBA 1ZHWA 2MHLA 2ODJA 4GF4A 2GE4A 5IYUA 2AF7A 2FGQX 3T20A 2PRNA 4D64A 2W81C 4D65A 8PRNA 1GFNA 3POXA 5JDPA 3D7IA 4FESA 4FSPA 4N58A 3T24A 3WI4A 1BH3A 1QJPA 2KDYA 3PRNA 4FRXA 4GCPA 3SZVA 3VE1A 4AZLA 3G7GA 3KVDD 4FUVA 1Q9FA 4D5UA 1OPFA 1MPFA 2PRRA 2IJCA 2KXPA 3T0SA 1PHOA 1YS5A 1H6S1 2PFXA 4LSEA 5PRNA 5DL7A 2ERVA 1ME5A 2O4VA 2M06A 2QEUA 5AFUK 2OUWA 1GFMA 1HXTA 3PORA 1OSMA 2XE3A 4FZMA 4N59A 4O3ZA 3C1LA 2Y0LA 4PUXA 1ZHTA 5GV0A 1QJ9A 2Y0HA 4JCHA 4GCQA 4AYEC 2ES9A 3AA0A 4O3WA 3TZGA 5DIKA 1G90A 3JTYA 2O4DA 3AA6A 3LK3A 3HWBA 3RBHA 4LSFA 1ZHYA 3HOEA 5EE2A 4AYNA 4RJWA 3AA7B 1HXXA 4KRAA 3VY8X 4G75A 3AA0B 3LK2B 4Z3TA 1QJ8A 2XTQA 4FSOA 3LK3B 3AA6B 5DIPA 2ZLDA 4B61A 1P8CA 3SY9A 2XE2A 3LVYA 1MM4A 3A2SX 5D5DA 2X27X 3VY9X 5T5FA 4G9QA 5G26A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AFU K;  2KZ7 A;  5ADX K;  3AAE B;  3AA7 A;  3AA1 B;  3LK2 A;  2KXP B;  3AA0 A;  4AKR A;  3LK3 A;  3AA6 A;  5ADX L;  2KZ7 B;  5AFU L;  3AAA A;  3AA7 B;  3AA0 B;  3LK2 B;  3LK4 2;  1IZN A;  4AKR B;  3LK3 B;  3LK4 1;  3AA6 B;  3AAA B;  3AAE A;  3AA1 A;  2KXP A;  1IZN B; 
#chains in the Genus database with same CATH topology
 4BUM X;  2M07 A;  2KZ7 A;  3DWO X;  3PQU A;  2KXP B;  1KNC A;  1E54 A;  2J4U P;  5DL6 A;  2FGR A;  5AFU L;  3SZD A;  3VZW X;  2KC0 A;  2R8A A;  4G76 A;  3BRY A;  1LW1 A;  3VZU X;  3SYS A;  1GFP A;  1ORM A;  1GU9 A;  4AYM C;  2XTR A;  5H2F O;  4KR8 A;  2F1C X;  3BS0 A;  5TIS O;  2N2M A;  4O4X A;  2OYO A;  4F4B A;  2Y7S A;  2JN8 A;  4GCS A;  4N74 A;  1ZHW A;  5IYU A;  4D64 A;  5JDP A;  3T24 A;  3SZV A;  3PRN A;  1T16 A;  1YS5 A;  2ERV A;  4O3Z A;  1S5L O;  4PUX A;  4JCH A;  3NJT A;  3AA0 A;  4O3W A;  3PF1 A;  2R4N A;  5B5E O;  3AA7 B;  1HXX A;  3AA0 B;  3LVY A;  3VY9 X;  2R4O A;  2WJQ A;  3K19 A;  5G39 A;  6PRN A;  2LFU A;  1HXU A;  3PGS A;  3LK4 1;  2IWV A;  3AAE A;  5DL5 A;  2QTK A;  3PGU A;  1VKE A;  4AYI D;  1P4T A;  4GHB A;  5ADX K;  3HOL A;  4JFB A;  1GFO A;  4FZL A;  5ADX L;  4QQ1 A;  2KZ7 B;  4K3C A;  2CWQ A;  3JCU O;  4O4U A;  3A0B O;  3UU2 A;  2GMY A;  2XMX A;  1T1L A;  2Q0T A;  3HW9 A;  3VE2 A;  2R4L A;  4FZN A;  2IWW A;  3V8U A;  2ODJ A;  4GF4 A;  2GE4 A;  2AF7 A;  2FGQ X;  3DWN A;  2PRN A;  2WJR A;  3POX A;  5GTH O;  4GCP A;  4FRX A;  3KZI O;  4AZL A;  3KVD D;  4D5U A;  1MPF A;  2IJC A;  4N75 A;  1H6S 1;  5PRN A;  5DL7 A;  1ME5 A;  2O4V A;  2M06 A;  2QEU A;  3POR A;  2OUW A;  1OSM A;  3C1L A;  5GV0 A;  4GCQ A;  2ES9 A;  3LK3 A;  3AA6 A;  3RBH A;  3HOE A;  5EE2 A;  4AYN A;  4RJW A;  3VY8 X;  4G75 A;  4Z3T A;  5G38 A;  2R88 A;  1QJ8 A;  2XTQ A;  3LK3 B;  3AA6 B;  5DIP A;  2ZLD A;  3SY9 A;  2XE2 A;  5D5D A;  3A2S X;  2WVP A;  5G26 A;  3EMN X;  2LHF A;  3QRA A;  5DL8 A;  2F1T A;  5KAI O;  3WI5 A;  3GP6 A;  4UB8 O;  4AKR A;  2YPV A;  3DZM A;  4AUI A;  4XNK A;  2OMF A;  4AFK A;  4FRT A;  4C69 X;  4AKR B;  4E1S A;  3A0H O;  4AKM A;  4LSI A;  4RL9 A;  3POU A;  3AA1 A;  5FVN A;  4RJX A;  3UPG A;  3SY7 A;  5B66 O;  3WU2 O;  3AA1 B;  2W80 C;  7PRN A;  3POQ A;  4K3B A;  3QRC A;  2Y0K A;  3LK4 2;  4O3X B;  1IZN A;  3NSG A;  4XNL A;  4O3Y A;  4RLC A;  4FT6 A;  4FMS A;  1ZHX A;  1IZN B;  3FYX A;  1PRN A;  3AAE B;  3LK2 A;  4AYD C;  2MHL A;  4PR7 A;  3D7I A;  2AXT O;  4FES A;  4FSP A;  4N58 A;  1BH3 A;  2KDY A;  3VE1 A;  3G7G A;  4FUV A;  1OPF A;  2KXP A;  3T0S A;  1PHO A;  2PFX A;  4LSE A;  1HXT A;  5AFU K;  4FZM A;  2Y0L A;  1ZHT A;  1QJ9 A;  4AYE C;  3JTY A;  4C00 A;  5GTI O;  3HWB A;  3PGR A;  4LSF A;  4KRA A;  4PJ0 O;  4FSO A;  4B61 A;  1P8C A;  2X27 X;  5T5F A;  4G9Q A;  3PQS A;  3BRZ A;  2X9K A;  2XE5 A;  1BXW A;  5G3A A;  2POR A;  2MNH A;  2XG6 A;  2XE1 A;  2N2L A;  1ZHZ A;  2ZFG A;  4LSH A;  3UAQ A;  2R89 A;  1GFQ A;  4O49 A;  2K4T A;  2JQY A;  2YNK A;  4IL6 O;  1THQ A;  2K0L A;  2R4P A;  1Q9G A;  4CTD A;  1BT9 A;  3O0E A;  3C5O A;  1MM5 A;  4C4V A;  3BEY A;  3AAA A;  2J1N A;  2JMM A;  4FOZ A;  4C4V B;  2Y2X A;  3AAA B;  3VZT X;  3DA4 A;  3DA3 A;  4KR4 A;  3SYB A;  3AA7 A;  5E79 O;  4U9C A;  2F1V A;  4E1T A;  4RLB A;  5KAF O;  3T20 A;  2W81 C;  4D65 A;  8PRN A;  1GFN A;  3WI4 A;  1QJP A;  1Q9F A;  2PRR A;  4UB6 O;  4N59 A;  1GFM A;  2XE3 A;  2Y0H A;  3TZG A;  5DIK A;  1G90 A;  2O4D A;  1ZHY A;  3LK2 B;  4FQE A;  1MM4 A; 
#chains in the Genus database with same CATH homology
 3PQS A;  3K19 A;  3EMN X;  2LHF A;  4BUM X;  2M07 A;  2KZ7 A;  2XE5 A;  3QRA A;  3PQU A;  1BXW A;  5DL8 A;  2F1T A;  3WI5 A;  2KXP B;  1KNC A;  1E54 A;  6PRN A;  3GP6 A;  2J4U P;  5DL6 A;  2POR A;  4AKR A;  2MNH A;  2XG6 A;  2YPV A;  2FGR A;  5AFU L;  2XE1 A;  4AUI A;  4XNK A;  2LFU A;  2N2L A;  1ZHZ A;  1HXU A;  3SZD A;  2ZFG A;  4LSH A;  3UAQ A;  2OMF A;  4AFK A;  4FRT A;  4C69 X;  1GFQ A;  3VZW X;  4O49 A;  2K4T A;  4AKR B;  3LK4 1;  2YNK A;  4LSI A;  4AKM A;  4E1S A;  2KC0 A;  1THQ A;  4RL9 A;  3AAE A;  5DL5 A;  2QTK A;  2K0L A;  3POU A;  1Q9G A;  4G76 A;  3AA1 A;  5FVN A;  1VKE A;  4RJX A;  4AYI D;  1P4T A;  4GHB A;  5ADX K;  3UPG A;  1BT9 A;  3SY7 A;  3HOL A;  3O0E A;  4JFB A;  3AA1 B;  2W80 C;  1GFO A;  4FZL A;  7PRN A;  3C5O A;  3POQ A;  1LW1 A;  3VZU X;  3SYS A;  3QRC A;  1GFP A;  1MM5 A;  5ADX L;  4QQ1 A;  1ORM A;  2KZ7 B;  3BEY A;  3AAA A;  2Y0K A;  2J1N A;  2JMM A;  1GU9 A;  4AYM C;  2CWQ A;  3LK4 2;  4FOZ A;  2XTR A;  4O4U A;  4O3X B;  1IZN A;  3NSG A;  3UU2 A;  4XNL A;  4O3Y A;  4KR8 A;  2Y2X A;  3AAA B;  4FT6 A;  4RLC A;  4FMS A;  1ZHX A;  3VZT X;  2GMY A;  2N2M A;  3DA4 A;  3DA3 A;  2XMX A;  1IZN B;  3FYX A;  4O4X A;  2OYO A;  4F4B A;  2Q0T A;  3HW9 A;  3VE2 A;  1PRN A;  4FZN A;  4KR4 A;  2Y7S A;  3SYB A;  3AAE B;  3AA7 A;  2JN8 A;  4GCS A;  2F1V A;  4U9C A;  3LK2 A;  3V8U A;  4E1T A;  4AYD C;  4RLB A;  1ZHW A;  2MHL A;  2ODJ A;  4GF4 A;  2GE4 A;  5IYU A;  2AF7 A;  2FGQ X;  3T20 A;  2PRN A;  4D64 A;  2W81 C;  4D65 A;  8PRN A;  1GFN A;  3POX A;  5JDP A;  3D7I A;  4FES A;  4FSP A;  4N58 A;  3T24 A;  3WI4 A;  1BH3 A;  1QJP A;  2KDY A;  3PRN A;  4FRX A;  4GCP A;  3SZV A;  3VE1 A;  4AZL A;  3G7G A;  3KVD D;  4FUV A;  1Q9F A;  4D5U A;  1OPF A;  1MPF A;  2PRR A;  2IJC A;  2KXP A;  3T0S A;  1PHO A;  1YS5 A;  1H6S 1;  2PFX A;  4LSE A;  5PRN A;  5DL7 A;  2ERV A;  1ME5 A;  2O4V A;  2M06 A;  2QEU A;  5AFU K;  2OUW A;  1GFM A;  1HXT A;  3POR A;  1OSM A;  2XE3 A;  4FZM A;  4N59 A;  4O3Z A;  3C1L A;  2Y0L A;  4PUX A;  1ZHT A;  5GV0 A;  1QJ9 A;  2Y0H A;  4JCH A;  4GCQ A;  4AYE C;  2ES9 A;  3AA0 A;  4O3W A;  3TZG A;  5DIK A;  1G90 A;  3JTY A;  2O4D A;  3AA6 A;  3LK3 A;  3HWB A;  3RBH A;  4LSF A;  1ZHY A;  3HOE A;  5EE2 A;  4AYN A;  4RJW A;  3AA7 B;  1HXX A;  4KRA A;  3VY8 X;  4G75 A;  3AA0 B;  3LK2 B;  4Z3T A;  1QJ8 A;  2XTQ A;  4FSO A;  3LK3 B;  3AA6 B;  5DIP A;  2ZLD A;  4B61 A;  1P8C A;  3SY9 A;  2XE2 A;  3LVY A;  1MM4 A;  3A2S X;  5D5D A;  2X27 X;  3VY9 X;  5T5F A;  4G9Q A;  5G26 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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