4AKRA

Crystal structure of the cytoplasmic actin capping protein cap32_34 from dictyostelium discoideum
Total Genus 80
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
269
structure length
269
Chain Sequence
ASNQELVQIATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSVQTSKGSALITKEGEISNNEYLDPKNKQVITYDHIKQEVTGERSASGEIEQDIEQYRAAFDEEATKYCNEYYPNGVSAVYGTKVSEGIKITVCISTCIYKPNAFYSGRWRSVWTCTFKPGSGNVTSNGKVQVNVHYFEDGNVQLNTVTQKQTTSPSADAQSTAVNAFKAIGKAELNLHTALDNNYSTMGDTTFKALRRALPINRTKINWQKV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Actin-binding protein
molecule keywords F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA
publication title Conservation and Divergence between Cytoplasmic and Muscle-Specific Actin Capping Proteins: Insights from the Crystal Structure of Cytoplasmic CAP32/34 from Dictyostelium Discoideum.
pubmed doi rcsb
source organism Dictyostelium discoideum
total genus 80
structure length 269
sequence length 269
chains with identical sequence C
ec nomenclature
pdb deposition date 2012-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 4akrA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 4akrA02
3LK42 3AA0A 3AA0B 2KXPA 3LK41 2KXPB 1IZNA 1IZNB 3AAAA 3AAAB 3AAEA 4AKRA 3AAEB 4AKRB 5ADXL 5AFUL 5ADXK 3AA1A 5AFUK 3AA1B 3LK3A 3LK3B 3AA7A 3AA7B 3AA6A 3AA6B 2KZ7A 2KZ7B 3LK2A 3LK2B
chains in the Genus database with same CATH superfamily
3A0BO 4AYEC 1OPFA 3JCUO 3POQA 2XG6A 5FVNA 2XE1A 2Y0LA 1QJ8A 2F1VA 2R88A 4AKRB 2XE3A 2M06A 1E54A 5AFUL 4JFBA 2ODJA 1P4TA 3HW9A 2XMXA 4C4VA 3AA0A 1LW1A 2MNHA 3LK41 4GF4A 2XE2A 3BRZA 3DA3A 3GP6A 3D7IA 4D5UA 5AFUK 4G75A 3VY9X 4B61A 4F4BA 1MPFA 2MHLA 2K4TA 3SY9A 4FZNA 4AYID 3VZWX 4RJXA 4G76A 2R89A 3T24A 1HXUA 3AAAB 2R4LA 4O4UA 2ZLDA 4AYDC 3DZMA 5B5EO 1S5LO 4CTDA 3BEYA 1GFMA 5E79O 2J4UP 3VZTX 2X9KA 3AA6A 1BT9A 4E1SA 4AZLA 5GV0A 2KDYA 4RLCA 2FGRA 3POXA 2JN8A 2PRNA 3O0EA 3V8UA 3VY8X 3A0HO 1ZHWA 5G3AA 3AA1A 3LK3A 4O49A 4FT6A 3LK2A 4G9QA 4GCQA 4U9CA 3AA0B 4FSOA 1IZNA 2IWVA 3KVDD 4Z3TA 4E1TA 1GFPA 4IL6O 4O3WA 3G7GA 2O4VA 5GTIO 2N2MA 2X27X 1HXTA 2Q0TA 3PGRA 4BUMX 5KAIO 5G26A 1YS5A 3LK42 2QEUA 3SYBA 3FYXA 3A2SX 1MM4A 2WJQA 4FRXA 3PQUA 2PRRA 3POUA 4PR7A 3VE2A 2Y0HA 3AA6B 4KR8A 2R4PA 5T5FA 2IWWA 3HOLA 3WU2O 4FRTA 2FGQX 2R8AA 4PUXA 5DL6A 1ZHTA 1PRNA 4KR4A 1T1LA 1KNCA 3AA1B 3UPGA 2ES9A 3LK3B 3T0SA 1QJPA 3SYSA 3LK2B 3QRCA 2O4DA 1BXWA 4O3XB 3SY7A 1IZNB 4FUVA 3AAEA 2M07A 1Q9GA 4FESA 1T16A 4FZMA 4RL9A 4FOZA 1GU9A 3NJTA 3RBHA 5G38A 2OUWA 4UB6O 3VZUX 5ADXK 3EMNX 5DL8A 3KZIO 3AA7A 2AXTO 2N2LA 7PRNA 2R4NA 4C4VB 3PGUA 4FSPA 4O4XA 3PGSA 4O3ZA 5TISO 2CWQA 3VE1A 1GFQA 5B66O 2XE5A 4N58A 1ZHYA 4AFKA 4N74A 1QJ9A 4AUIA 4GCPA 4QQ1A 3QRAA 2F1TA 5EE2A 2QTKA 8PRNA 2JMMA 2ERVA 3AAEB 4JCHA 1OSMA 1GFOA 4AYMC 4XNKA 1HXXA 4C69X 4GHBA 4LSFA 2ZFGA 5KAFO 1VKEA 2IJCA 4FQEA 3HWBA 4AKMA 2XTRA 2W80C 4GCSA 2XTQA 3HOEA 4C00A 2WJRA 5DIPA 3LVYA 1GFNA 4PJ0O 3JTYA 2YNKA 3PF1A 2K0LA 3PORA 2Y0KA 1ZHXA 1ME5A 5D5DA 4N75A 2PORA 3AA7B 1ORMA 2KZ7A 4FMSA 1THQA 1ZHZA 2KXPA 4K3CA 2GE4A 5ADXL 2KC0A 2OMFA 2LFUA 5G39A 5JDPA 3DA4A 1Q9FA 4LSHA 3NSGA 4RLBA 2W81C 4D64A 4O3YA 5DIKA 1BH3A 2J1NA 2R4OA 2JQYA 3SZDA 4AKRA 3T20A 4N59A 3BS0A 4AYNA 2Y7SA 3PQSA 3TZGA 4LSIA 2F1CX 1P8CA 5PRNA 2WVPA 2LHFA 4D65A 3SZVA 5DL7A 3UAQA 3WI5A 4RJWA 3DWNA 1MM5A 4UB8O 2AF7A 2PFXA 1PHOA 3PRNA 4KRAA 3C1LA 4LSEA 3UU2A 2KZ7B 3DWOX 5GTHO 5H2FO 2Y2XA 5DL5A 3K19A 3WI4A 2KXPB 5IYUA 3AAAA 2OYOA 2YPVA 3C5OA 1H6S1 4FZLA 1G90A 6PRNA 3BRYA 2GMYA 4XNLA 4K3BA
chains in the Genus database with same CATH topology
4G9QA 4GCQA 4U9CA 3AA0B 1OPFA 4AYEC 4FMSA 1THQA 1ZHZA 3POQA 1GU9A 2KXPA 2XG6A 4FSOA 5FVNA 2XE1A 2Y0LA 1IZNA 1QJ8A 4F4BA 3KVDD 4Z3TA 3RBHA 2GE4A 2F1VA 4E1TA 2OUWA 1GFPA 4AKRB 5ADXL 2KC0A 2XE3A 2M06A 1E54A 3G7GA 2OMFA 4JFBA 4O3WA 3VZUX 5AFUL 5ADXK 2LFUA 3EMNX 5JDPA 2O4VA 3DA4A 1Q9FA 2ODJA 1P4TA 2N2MA 3HW9A 2X27X 5DL8A 4LSHA 1HXTA 3AA7A 3NSGA 2Q0TA 4BUMX 2XMXA 2N2LA 4RLBA 5G26A 1YS5A 7PRNA 3LK42 2W81C 3AA0A 1LW1A 2QEUA 2MNHA 4D64A 3LK41 3SYBA 3FYXA 4O3YA 4FSPA 4GF4A 3A2SX 4O4XA 5DIKA 1BH3A 2J1NA 1MM4A 4O3ZA 2XE2A 4FRXA 2CWQA 4AKRA 3DA3A 3PQUA 3SZDA 3VE1A 1GFQA 2PRRA 3T20A 3GP6A 3D7IA 3POUA 4D5UA 4N59A 2XE5A 4N58A 1ZHYA 5AFUK 4AYNA 4AFKA 4G75A 2Y7SA 3PQSA 3TZGA 3VE2A 3VY9X 4LSIA 1MPFA 2Y0HA 4B61A 1P8CA 1QJ9A 5PRNA 4AUIA 3AA6B 4GCPA 2MHLA 4KR8A 4QQ1A 5T5FA 3QRAA 2F1TA 3HOLA 2LHFA 2K4TA 4FRTA 5EE2A 3SY9A 4FZNA 2FGQX 3SZVA 4AYID 5DL7A 4RJXA 3VZWX 4D65A 2QTKA 4G76A 4PUXA 3UAQA 8PRNA 5DL6A 1ZHTA 2JMMA 2ERVA 1PRNA 3T24A 3WI5A 1HXUA 3AAAB 4KR4A 4O4UA 3AAEB 4JCHA 2ZLDA 1OSMA 1GFOA 4RJWA 4AYDC 1KNCA 1MM5A 4AYMC 4XNKA 3BEYA 2AF7A 3AA1B 3UPGA 1HXXA 2PFXA 1GFMA 1PHOA 2ES9A 3LK3B 3PRNA 4GHBA 4LSFA 4C69X 2J4UP 2ZFGA 3T0SA 3VZTX 4KRAA 1QJPA 3AA6A 1BT9A 3C1LA 4LSEA 1VKEA 2IJCA 3HWBA 3UU2A 2KZ7B 3SYSA 3LK2B 2Y2XA 5DL5A 3K19A 3QRCA 2O4DA 4E1SA 4AZLA 3WI4A 4AKMA 2KDYA 4RLCA 2FGRA 2KXPB 3POXA 1BXWA 5GV0A 5IYUA 4O3XB 2XTRA 3SY7A 2JN8A 1IZNB 2PRNA 2W80C 4GCSA 3O0EA 2XTQA 4FUVA 3V8UA 3AAAA 2OYOA 2YPVA 3AAEA 1H6S1 3C5OA 3HOEA 3VY8X 5DIPA 3LVYA 1GFNA 4FZLA 1ZHWA 3JTYA 2YNKA 1G90A 2K0LA 6PRNA 3PORA 2Y0KA 3AA1A 1ZHXA 1ME5A 3LK3A 2M07A 5D5DA 1Q9GA 4FESA 2PORA 2GMYA 3AA7B 4XNLA 1ORMA 4O49A 4FT6A 4FZMA 4RL9A 2KZ7A 3LK2A 4FOZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LK4 2;  3AA0 A;  3AA0 B;  2KXP A;  3LK4 1;  2KXP B;  1IZN A;  1IZN B;  3AAA A;  3AAA B;  3AAE A;  4AKR A;  3AAE B;  4AKR B;  5ADX L;  5AFU L;  5ADX K;  3AA1 A;  5AFU K;  3AA1 B;  3LK3 A;  3LK3 B;  3AA7 A;  3AA7 B;  3AA6 A;  3AA6 B;  2KZ7 A;  2KZ7 B;  3LK2 A;  3LK2 B; 
#chains in the Genus database with same CATH topology
 3A0B O;  4AYE C;  1OPF A;  3JCU O;  3POQ A;  2XG6 A;  5FVN A;  2XE1 A;  2Y0L A;  1QJ8 A;  2F1V A;  2R88 A;  4AKR B;  2XE3 A;  2M06 A;  1E54 A;  5AFU L;  4JFB A;  2ODJ A;  1P4T A;  3HW9 A;  2XMX A;  4C4V A;  3AA0 A;  1LW1 A;  2MNH A;  3LK4 1;  4GF4 A;  2XE2 A;  3BRZ A;  3DA3 A;  3GP6 A;  3D7I A;  4D5U A;  5AFU K;  4G75 A;  3VY9 X;  4B61 A;  4F4B A;  1MPF A;  2MHL A;  2K4T A;  3SY9 A;  4FZN A;  4AYI D;  3VZW X;  4RJX A;  4G76 A;  2R89 A;  3T24 A;  1HXU A;  3AAA B;  2R4L A;  4O4U A;  2ZLD A;  4AYD C;  3DZM A;  5B5E O;  1S5L O;  4CTD A;  3BEY A;  1GFM A;  5E79 O;  2J4U P;  3VZT X;  2X9K A;  3AA6 A;  1BT9 A;  4E1S A;  4AZL A;  5GV0 A;  2KDY A;  4RLC A;  2FGR A;  3POX A;  2JN8 A;  2PRN A;  3O0E A;  3V8U A;  3VY8 X;  3A0H O;  1ZHW A;  5G3A A;  3AA1 A;  3LK3 A;  4O49 A;  4FT6 A;  3LK2 A;  4G9Q A;  4GCQ A;  4U9C A;  3AA0 B;  4FSO A;  1IZN A;  2IWV A;  3KVD D;  4Z3T A;  4E1T A;  1GFP A;  4IL6 O;  4O3W A;  3G7G A;  2O4V A;  5GTI O;  2N2M A;  2X27 X;  1HXT A;  2Q0T A;  3PGR A;  4BUM X;  5KAI O;  5G26 A;  1YS5 A;  3LK4 2;  2QEU A;  3SYB A;  3FYX A;  3A2S X;  1MM4 A;  2WJQ A;  4FRX A;  3PQU A;  2PRR A;  3POU A;  4PR7 A;  3VE2 A;  2Y0H A;  3AA6 B;  4KR8 A;  2R4P A;  5T5F A;  2IWW A;  3HOL A;  3WU2 O;  4FRT A;  2FGQ X;  2R8A A;  4PUX A;  5DL6 A;  1ZHT A;  1PRN A;  4KR4 A;  1T1L A;  1KNC A;  3AA1 B;  3UPG A;  2ES9 A;  3LK3 B;  3T0S A;  1QJP A;  3SYS A;  3LK2 B;  3QRC A;  2O4D A;  1BXW A;  4O3X B;  3SY7 A;  1IZN B;  4FUV A;  3AAE A;  2M07 A;  1Q9G A;  4FES A;  1T16 A;  4FZM A;  4RL9 A;  4FOZ A;  1GU9 A;  3NJT A;  3RBH A;  5G38 A;  2OUW A;  4UB6 O;  3VZU X;  5ADX K;  3EMN X;  5DL8 A;  3KZI O;  3AA7 A;  2AXT O;  2N2L A;  7PRN A;  2R4N A;  4C4V B;  3PGU A;  4FSP A;  4O4X A;  3PGS A;  4O3Z A;  5TIS O;  2CWQ A;  3VE1 A;  1GFQ A;  5B66 O;  2XE5 A;  4N58 A;  1ZHY A;  4AFK A;  4N74 A;  1QJ9 A;  4AUI A;  4GCP A;  4QQ1 A;  3QRA A;  2F1T A;  5EE2 A;  2QTK A;  8PRN A;  2JMM A;  2ERV A;  3AAE B;  4JCH A;  1OSM A;  1GFO A;  4AYM C;  4XNK A;  1HXX A;  4C69 X;  4GHB A;  4LSF A;  2ZFG A;  5KAF O;  1VKE A;  2IJC A;  4FQE A;  3HWB A;  4AKM A;  2XTR A;  2W80 C;  4GCS A;  2XTQ A;  3HOE A;  4C00 A;  2WJR A;  5DIP A;  3LVY A;  1GFN A;  4PJ0 O;  3JTY A;  2YNK A;  3PF1 A;  2K0L A;  3POR A;  2Y0K A;  1ZHX A;  1ME5 A;  5D5D A;  4N75 A;  2POR A;  3AA7 B;  1ORM A;  2KZ7 A;  4FMS A;  1THQ A;  1ZHZ A;  2KXP A;  4K3C A;  2GE4 A;  5ADX L;  2KC0 A;  2OMF A;  2LFU A;  5G39 A;  5JDP A;  3DA4 A;  1Q9F A;  4LSH A;  3NSG A;  4RLB A;  2W81 C;  4D64 A;  4O3Y A;  5DIK A;  1BH3 A;  2J1N A;  2R4O A;  2JQY A;  3SZD A;  4AKR A;  3T20 A;  4N59 A;  3BS0 A;  4AYN A;  2Y7S A;  3PQS A;  3TZG A;  4LSI A;  2F1C X;  1P8C A;  5PRN A;  2WVP A;  2LHF A;  4D65 A;  3SZV A;  5DL7 A;  3UAQ A;  3WI5 A;  4RJW A;  3DWN A;  1MM5 A;  4UB8 O;  2AF7 A;  2PFX A;  1PHO A;  3PRN A;  4KRA A;  3C1L A;  4LSE A;  3UU2 A;  2KZ7 B;  3DWO X;  5GTH O;  5H2F O;  2Y2X A;  5DL5 A;  3K19 A;  3WI4 A;  2KXP B;  5IYU A;  3AAA A;  2OYO A;  2YPV A;  3C5O A;  1H6S 1;  4FZL A;  1G90 A;  6PRN A;  3BRY A;  2GMY A;  4XNL A;  4K3B A; 
#chains in the Genus database with same CATH homology
 4G9Q A;  4GCQ A;  4U9C A;  3AA0 B;  1OPF A;  4AYE C;  4FMS A;  1THQ A;  1ZHZ A;  3POQ A;  1GU9 A;  2KXP A;  2XG6 A;  4FSO A;  5FVN A;  2XE1 A;  2Y0L A;  1IZN A;  1QJ8 A;  4F4B A;  3KVD D;  4Z3T A;  3RBH A;  2GE4 A;  2F1V A;  4E1T A;  2OUW A;  1GFP A;  4AKR B;  5ADX L;  2KC0 A;  2XE3 A;  2M06 A;  1E54 A;  3G7G A;  2OMF A;  4JFB A;  4O3W A;  3VZU X;  5AFU L;  5ADX K;  2LFU A;  3EMN X;  5JDP A;  2O4V A;  3DA4 A;  1Q9F A;  2ODJ A;  1P4T A;  2N2M A;  3HW9 A;  2X27 X;  5DL8 A;  4LSH A;  1HXT A;  3AA7 A;  3NSG A;  2Q0T A;  4BUM X;  2XMX A;  2N2L A;  4RLB A;  5G26 A;  1YS5 A;  7PRN A;  3LK4 2;  2W81 C;  3AA0 A;  1LW1 A;  2QEU A;  2MNH A;  4D64 A;  3LK4 1;  3SYB A;  3FYX A;  4O3Y A;  4FSP A;  4GF4 A;  3A2S X;  4O4X A;  5DIK A;  1BH3 A;  2J1N A;  1MM4 A;  4O3Z A;  2XE2 A;  4FRX A;  2CWQ A;  4AKR A;  3DA3 A;  3PQU A;  3SZD A;  3VE1 A;  1GFQ A;  2PRR A;  3T20 A;  3GP6 A;  3D7I A;  3POU A;  4D5U A;  4N59 A;  2XE5 A;  4N58 A;  1ZHY A;  5AFU K;  4AYN A;  4AFK A;  4G75 A;  2Y7S A;  3PQS A;  3TZG A;  3VE2 A;  3VY9 X;  4LSI A;  1MPF A;  2Y0H A;  4B61 A;  1P8C A;  1QJ9 A;  5PRN A;  4AUI A;  3AA6 B;  4GCP A;  2MHL A;  4KR8 A;  4QQ1 A;  5T5F A;  3QRA A;  2F1T A;  3HOL A;  2LHF A;  2K4T A;  4FRT A;  5EE2 A;  3SY9 A;  4FZN A;  2FGQ X;  3SZV A;  4AYI D;  5DL7 A;  4RJX A;  3VZW X;  4D65 A;  2QTK A;  4G76 A;  4PUX A;  3UAQ A;  8PRN A;  5DL6 A;  1ZHT A;  2JMM A;  2ERV A;  1PRN A;  3T24 A;  3WI5 A;  1HXU A;  3AAA B;  4KR4 A;  4O4U A;  3AAE B;  4JCH A;  2ZLD A;  1OSM A;  1GFO A;  4RJW A;  4AYD C;  1KNC A;  1MM5 A;  4AYM C;  4XNK A;  3BEY A;  2AF7 A;  3AA1 B;  3UPG A;  1HXX A;  2PFX A;  1GFM A;  1PHO A;  2ES9 A;  3LK3 B;  3PRN A;  4GHB A;  4LSF A;  4C69 X;  2J4U P;  2ZFG A;  3T0S A;  3VZT X;  4KRA A;  1QJP A;  3AA6 A;  1BT9 A;  3C1L A;  4LSE A;  1VKE A;  2IJC A;  3HWB A;  3UU2 A;  2KZ7 B;  3SYS A;  3LK2 B;  2Y2X A;  5DL5 A;  3K19 A;  3QRC A;  2O4D A;  4E1S A;  4AZL A;  3WI4 A;  4AKM A;  2KDY A;  4RLC A;  2FGR A;  2KXP B;  3POX A;  1BXW A;  5GV0 A;  5IYU A;  4O3X B;  2XTR A;  3SY7 A;  2JN8 A;  1IZN B;  2PRN A;  2W80 C;  4GCS A;  3O0E A;  2XTQ A;  4FUV A;  3V8U A;  3AAA A;  2OYO A;  2YPV A;  3AAE A;  1H6S 1;  3C5O A;  3HOE A;  3VY8 X;  5DIP A;  3LVY A;  1GFN A;  4FZL A;  1ZHW A;  3JTY A;  2YNK A;  1G90 A;  2K0L A;  6PRN A;  3POR A;  2Y0K A;  3AA1 A;  1ZHX A;  1ME5 A;  3LK3 A;  2M07 A;  5D5D A;  1Q9G A;  4FES A;  2POR A;  2GMY A;  3AA7 B;  4XNL A;  1ORM A;  4O49 A;  4FT6 A;  4FZM A;  4RL9 A;  2KZ7 A;  3LK2 A;  4FOZ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...