4AKRA

Crystal structure of the cytoplasmic actin capping protein cap32_34 from dictyostelium discoideum
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
269
structure length
269
Chain Sequence
b'ASNQELVQIATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSVQTSKGSALITKEGEISNNEYLDPKNKQVITYDHIKQEVTGERSASGEIEQDIEQYRAAFDEEATKYCNEYYPNGVSAVYGTKVSEGIKITVCISTCIYKPNAFYSGRWRSVWTCTFKPGSGNVTSNGKVQVNVHYFEDGNVQLNTVTQKQTTSPSADAQSTAVNAFKAIGKAELNLHTALDNNYSTMGDTTFKALRRALPINRTKINWQKV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA
publication title Conservation and Divergence between Cytoplasmic and Muscle-Specific Actin Capping Proteins: Insights from the Crystal Structure of Cytoplasmic CAP32/34 from Dictyostelium Discoideum.
pubmed doi rcsb
source organism Dictyostelium discoideum
molecule tags Actin-binding protein
total genus 80
structure length 269
sequence length 269
chains with identical sequence C
ec nomenclature
pdb deposition date 2012-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 4akrA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 4akrA02
3AA7A 5ADXK 3AAAA 3LK2A 5ADXL 3AAEB 1IZNA 4AKRA 3LK41 3AA1A 3AA6B 3AA7B 3AA0A 3LK3A 2KZ7A 2KXPA 3AAAB 3LK2B 5AFUK 5AFUL 1IZNB 3AAEA 3AA0B 4AKRB 3LK42 3AA1B 3LK3B 3AA6A 2KZ7B 2KXPB
chains in the Genus database with same CATH superfamily
2PORA 3PRNA 4FOZA 4AFKA 1HXUA 3UU2A 2OUWA 3DA3A 3AA7B 1GFOA 2K0LA 2M06A 5AFUK 1BH3A 4FSPA 3O0EA 3WI4A 5E79O 2FGQX 1ZHXA 2PFXA 3AA0B 4FRXA 2GE4A 4E1TA 2OMFA 1ZHWA 2F1CX 4C69X 1GFMA 3AA0A 5DL8A 3QRCA 4JFBA 2N2MA 2KXPB 1Q9FA 2J1NA 2R4OA 2Y0LA 4LSHA 4G76A 5DIKA 2KXPA 3PF1A 2PRNA 1VKEA 4LSEA 4UB8O 4N75A 3SYBA 1P4TA 5PRNA 2XTRA 2F1TA 2LFUA 3HW9A 4LSFA 3DWNA 2IJCA 1ZHYA 4GCPA 3D7IA 2WJRA 3SZDA 4E1SA 2O4VA 3T0SA 1MM5A 5IYUA 3RBHA 3WI5A 1QJ8A 5GTHO 2QEUA 2YPVA 4AZLA 4IL6O 3VZWX 3POXA 3C1LA 3HOLA 2Y2XA 1BT9A 2AF7A 4GCQA 2FGRA 3UAQA 2MHLA 4U9CA 2OYOA 2ES9A 5EE2A 2QTKA 1T1LA 2M07A 5GV0A 3SYSA 5ADXL 2O4DA 2Y7SA 1IZNA 1MM4A 3VE2A 2K4TA 4XNKA 3PQSA 3AAAB 1OSMA 5FVNA 3T20A 4RLCA 4O49A 5G38A 4C00A 3AA1B 3HOEA 3AA7A 1QJ9A 2Q0TA 3AAAA 2JN8A 3VY8X 5TISO 1HXTA 3AA1A 2W81C 5G26A 2XE5A 4FSOA 5KAFO 1GU9A 1PHOA 1ZHTA 1BXWA 2ERVA 3NJTA 4XNLA 1P8CA 2ODJA 2J4UP 2R4PA 4K3CA 3LK42 2X27X 4C4VB 5B5EO 2KZ7B 1GFPA 4D5UA 2R4NA 4GCSA 2XE2A 4FZMA 2JMMA 1PRNA 4FT6A 2R89A 4JCHA 4FUVA 4N74A 3LK41 4C4VA 1YS5A 5DIPA 3JTYA 2KZ7A 3WU2O 2N2LA 1LW1A 2XTQA 4AKRB 1MPFA 4FZLA 3VZTX 3BRYA 3POUA 2Y0KA 2MNHA 4RJXA 2KC0A 5DL6A 4FMSA 3C5OA 1ZHZA 3PGSA 3DWOX 3LK3B 1THQA 4N58A 5ADXK 4AYID 3QRAA 3POQA 4AUIA 4AYEC 3AA6B 2Y0HA 3VY9X 4O4UA 2ZFGA 3SY9A 5JDPA 2IWWA 1GFQA 3AA6A 4GF4A 4FESA 4PJ0O 3BEYA 4PUXA 8PRNA 5B66O 3PORA 1OPFA 1QJPA 3NSGA 1GFNA 5D5DA 1S5LO 3VZUX 1E54A 2YNKA 3V8UA 3LK2B 4KRAA 2IWVA 4FZNA 4FRTA 3BRZA 4O3WA 3LK2A 5T5FA 3A0BO 2R8AA 3BS0A 4QQ1A 5G3AA 1G90A 2XG6A 3EMNX 3A0HO 2R4LA 5H2FO 3SY7A 3JCUO 2WVPA 4AKMA 2KDYA 4CTDA 3SZVA 3TZGA 3FYXA 2ZLDA 3AAEB 1ME5A 2LHFA 4FQEA 5DL5A 3PQUA 2XE1A 4AYDC 2W80C 2XE3A 2AXTO 6PRNA 4G75A 5AFUL 3DZMA 3AAEA 2CWQA 2GMYA 3HWBA 4O3XB 4F4BA 4BUMX 4AKRA 1ORMA 2XMXA 4RJWA 1Q9GA 4AYMC 2X9KA 3T24A 4PR7A 4O3ZA 5G39A 3PGRA 1H6S1 4O3YA 4GHBA 4UB6O 3VE1A 2JQYA 4KR4A 5GTIO 4D64A 1T16A 2WJQA 1HXXA 3LK3A 3LVYA 3K19A 7PRNA 4K3BA 3G7GA 4G9QA 1KNCA 3KZIO 4N59A 3PGUA 4Z3TA 4KR8A 2R88A 4D65A 3GP6A 4AYNA 4LSIA 2F1VA 4B61A 3UPGA 4O4XA 3KVDD 4RL9A 2PRRA 1IZNB 3DA4A 5KAIO 5DL7A 4RLBA 3A2SX
chains in the Genus database with same CATH topology
3VZTX 2PORA 3PRNA 2QEUA 3TZGA 3FYXA 3POUA 2Y0KA 4FOZA 4AFKA 2ZLDA 2YPVA 1HXUA 3AAEB 4AZLA 3UU2A 1ME5A 2LHFA 2MNHA 5DL5A 4RJXA 3VZWX 3PQUA 2OUWA 3DA3A 2XE1A 3AA7B 4AYDC 2KC0A 3POXA 2W80C 3C1LA 3HOLA 1GFOA 2Y2XA 2XE3A 1BT9A 2K0LA 2M06A 6PRNA 5AFUK 5DL6A 4G75A 2AF7A 5AFUL 1BH3A 4FSPA 3O0EA 4GCQA 3AAEA 4FMSA 2FGRA 2CWQA 2MHLA 1ZHZA 3C5OA 2OYOA 2ES9A 4U9CA 2QTKA 5EE2A 3UAQA 2M07A 2FGQX 3LK3B 2GMYA 1ZHXA 2PFXA 1THQA 3AA0B 3HWBA 4FRXA 5GV0A 2GE4A 4N58A 4O3XB 3WI4A 5ADXK 4AYID 3QRAA 3SYSA 3POQA 5ADXL 4E1TA 2OMFA 2O4DA 1ZHWA 4F4BA 2Y7SA 1IZNA 4BUMX 4AKRA 4C69X 1MM4A 4AUIA 1ORMA 4AYEC 2XMXA 1GFMA 3AA6B 4RJWA 2Y0HA 3VE2A 3AA0A 3VY9X 1Q9GA 2K4TA 4O4UA 4XNKA 4AYMC 3SZVA 2ZFGA 3T24A 3PQSA 3AAAB 1OSMA 4O3ZA 5FVNA 3T20A 5DL8A 3SY9A 4RLCA 3QRCA 5JDPA 4O49A 4JFBA 1H6S1 1GFQA 4O3YA 4GHBA 3AA1B 3AA6A 2N2MA 3HOEA 2KXPB 3VE1A 1Q9FA 3AA7A 4FESA 4GF4A 2J1NA 1QJ9A 4KR4A 3BEYA 4PUXA 2Q0TA 3AAAA 8PRNA 4D64A 2JN8A 3PORA 1OPFA 3VY8X 1QJPA 2Y0LA 3NSGA 4LSHA 1HXTA 1GFNA 3AA1A 2W81C 5G26A 2XE5A 1HXXA 4G76A 5DIKA 5D5DA 4FSOA 3LK3A 3LVYA 2KXPA 1GU9A 1PHOA 1ZHTA 2PRNA 3K19A 1E54A 2YNKA 3VZUX 7PRNA 3V8UA 1VKEA 1BXWA 3LK2B 2ERVA 4KRAA 4LSEA 4XNLA 3SYBA 1P8CA 1P4TA 2ODJA 3G7GA 2J4UP 5PRNA 4G9QA 1KNCA 3LK42 2X27X 2XTRA 4FZNA 4N59A 4FRTA 2KZ7B 2F1TA 1GFPA 4Z3TA 2LFUA 3HW9A 4KR8A 4LSFA 4O3WA 4D5UA 4GCSA 3LK2A 2XE2A 4FZMA 4D65A 5T5FA 2IJCA 2JMMA 1PRNA 1ZHYA 3GP6A 4AYNA 4FT6A 4GCPA 3D7IA 4LSIA 4JCHA 4FUVA 3LK41 3SZDA 4E1SA 1YS5A 2F1VA 5DIPA 4QQ1A 4B61A 3JTYA 2KZ7A 2O4VA 3UPGA 4O4XA 3T0SA 3KVDD 2N2LA 1G90A 2XG6A 1MM5A 4RL9A 3EMNX 1LW1A 2PRRA 1IZNB 3DA4A 2XTQA 3RBHA 3WI5A 1MPFA 5DL7A 3SY7A 4AKRB 5IYUA 4AKMA 2KDYA 1QJ8A 4FZLA 4RLBA 3A2SX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AA7 A;  5ADX K;  3AAA A;  3LK2 A;  5ADX L;  3AAE B;  1IZN A;  4AKR A;  3LK4 1;  3AA1 A;  3AA6 B;  3AA7 B;  3AA0 A;  3LK3 A;  2KZ7 A;  2KXP A;  3AAA B;  3LK2 B;  5AFU K;  5AFU L;  1IZN B;  3AAE A;  3AA0 B;  4AKR B;  3LK4 2;  3AA1 B;  3LK3 B;  3AA6 A;  2KZ7 B;  2KXP B; 
#chains in the Genus database with same CATH topology
 2POR A;  3PRN A;  4FOZ A;  4AFK A;  1HXU A;  3UU2 A;  2OUW A;  3DA3 A;  3AA7 B;  1GFO A;  2K0L A;  2M06 A;  5AFU K;  1BH3 A;  4FSP A;  3O0E A;  3WI4 A;  5E79 O;  2FGQ X;  1ZHX A;  2PFX A;  3AA0 B;  4FRX A;  2GE4 A;  4E1T A;  2OMF A;  1ZHW A;  2F1C X;  4C69 X;  1GFM A;  3AA0 A;  5DL8 A;  3QRC A;  4JFB A;  2N2M A;  2KXP B;  1Q9F A;  2J1N A;  2R4O A;  2Y0L A;  4LSH A;  4G76 A;  5DIK A;  2KXP A;  3PF1 A;  2PRN A;  1VKE A;  4LSE A;  4UB8 O;  4N75 A;  3SYB A;  1P4T A;  5PRN A;  2XTR A;  2F1T A;  2LFU A;  3HW9 A;  4LSF A;  3DWN A;  2IJC A;  1ZHY A;  4GCP A;  3D7I A;  2WJR A;  3SZD A;  4E1S A;  2O4V A;  3T0S A;  1MM5 A;  5IYU A;  3RBH A;  3WI5 A;  1QJ8 A;  5GTH O;  2QEU A;  2YPV A;  4AZL A;  4IL6 O;  3VZW X;  3POX A;  3C1L A;  3HOL A;  2Y2X A;  1BT9 A;  2AF7 A;  4GCQ A;  2FGR A;  3UAQ A;  2MHL A;  4U9C A;  2OYO A;  2ES9 A;  5EE2 A;  2QTK A;  1T1L A;  2M07 A;  5GV0 A;  3SYS A;  5ADX L;  2O4D A;  2Y7S A;  1IZN A;  1MM4 A;  3VE2 A;  2K4T A;  4XNK A;  3PQS A;  3AAA B;  1OSM A;  5FVN A;  3T20 A;  4RLC A;  4O49 A;  5G38 A;  4C00 A;  3AA1 B;  3HOE A;  3AA7 A;  1QJ9 A;  2Q0T A;  3AAA A;  2JN8 A;  3VY8 X;  5TIS O;  1HXT A;  3AA1 A;  2W81 C;  5G26 A;  2XE5 A;  4FSO A;  5KAF O;  1GU9 A;  1PHO A;  1ZHT A;  1BXW A;  2ERV A;  3NJT A;  4XNL A;  1P8C A;  2ODJ A;  2J4U P;  2R4P A;  4K3C A;  3LK4 2;  2X27 X;  4C4V B;  5B5E O;  2KZ7 B;  1GFP A;  4D5U A;  2R4N A;  4GCS A;  2XE2 A;  4FZM A;  2JMM A;  1PRN A;  4FT6 A;  2R89 A;  4JCH A;  4FUV A;  4N74 A;  3LK4 1;  4C4V A;  1YS5 A;  5DIP A;  3JTY A;  2KZ7 A;  3WU2 O;  2N2L A;  1LW1 A;  2XTQ A;  4AKR B;  1MPF A;  4FZL A;  3VZT X;  3BRY A;  3POU A;  2Y0K A;  2MNH A;  4RJX A;  2KC0 A;  5DL6 A;  4FMS A;  3C5O A;  1ZHZ A;  3PGS A;  3DWO X;  3LK3 B;  1THQ A;  4N58 A;  5ADX K;  4AYI D;  3QRA A;  3POQ A;  4AUI A;  4AYE C;  3AA6 B;  2Y0H A;  3VY9 X;  4O4U A;  2ZFG A;  3SY9 A;  5JDP A;  2IWW A;  1GFQ A;  3AA6 A;  4GF4 A;  4FES A;  4PJ0 O;  3BEY A;  4PUX A;  8PRN A;  5B66 O;  3POR A;  1OPF A;  1QJP A;  3NSG A;  1GFN A;  5D5D A;  1S5L O;  3VZU X;  1E54 A;  2YNK A;  3V8U A;  3LK2 B;  4KRA A;  2IWV A;  4FZN A;  4FRT A;  3BRZ A;  4O3W A;  3LK2 A;  5T5F A;  3A0B O;  2R8A A;  3BS0 A;  4QQ1 A;  5G3A A;  1G90 A;  2XG6 A;  3EMN X;  3A0H O;  2R4L A;  5H2F O;  3SY7 A;  3JCU O;  2WVP A;  4AKM A;  2KDY A;  4CTD A;  3SZV A;  3TZG A;  3FYX A;  2ZLD A;  3AAE B;  1ME5 A;  2LHF A;  4FQE A;  5DL5 A;  3PQU A;  2XE1 A;  4AYD C;  2W80 C;  2XE3 A;  2AXT O;  6PRN A;  4G75 A;  5AFU L;  3DZM A;  3AAE A;  2CWQ A;  2GMY A;  3HWB A;  4O3X B;  4F4B A;  4BUM X;  4AKR A;  1ORM A;  2XMX A;  4RJW A;  1Q9G A;  4AYM C;  2X9K A;  3T24 A;  4PR7 A;  4O3Z A;  5G39 A;  3PGR A;  1H6S 1;  4O3Y A;  4GHB A;  4UB6 O;  3VE1 A;  2JQY A;  4KR4 A;  5GTI O;  4D64 A;  1T16 A;  2WJQ A;  1HXX A;  3LK3 A;  3LVY A;  3K19 A;  7PRN A;  4K3B A;  3G7G A;  4G9Q A;  1KNC A;  3KZI O;  4N59 A;  3PGU A;  4Z3T A;  4KR8 A;  2R88 A;  4D65 A;  3GP6 A;  4AYN A;  4LSI A;  2F1V A;  4B61 A;  3UPG A;  4O4X A;  3KVD D;  4RL9 A;  2PRR A;  1IZN B;  3DA4 A;  5KAI O;  5DL7 A;  4RLB A;  3A2S X; 
#chains in the Genus database with same CATH homology
 3VZT X;  2POR A;  3PRN A;  2QEU A;  3TZG A;  3FYX A;  3POU A;  2Y0K A;  4FOZ A;  4AFK A;  2ZLD A;  2YPV A;  1HXU A;  3AAE B;  4AZL A;  3UU2 A;  1ME5 A;  2LHF A;  2MNH A;  5DL5 A;  4RJX A;  3VZW X;  3PQU A;  2OUW A;  3DA3 A;  2XE1 A;  3AA7 B;  4AYD C;  2KC0 A;  3POX A;  2W80 C;  3C1L A;  3HOL A;  1GFO A;  2Y2X A;  2XE3 A;  1BT9 A;  2K0L A;  2M06 A;  6PRN A;  5AFU K;  5DL6 A;  4G75 A;  2AF7 A;  5AFU L;  1BH3 A;  4FSP A;  3O0E A;  4GCQ A;  3AAE A;  4FMS A;  2FGR A;  2CWQ A;  2MHL A;  1ZHZ A;  3C5O A;  2OYO A;  2ES9 A;  4U9C A;  2QTK A;  5EE2 A;  3UAQ A;  2M07 A;  2FGQ X;  3LK3 B;  2GMY A;  1ZHX A;  2PFX A;  1THQ A;  3AA0 B;  3HWB A;  4FRX A;  5GV0 A;  2GE4 A;  4N58 A;  4O3X B;  3WI4 A;  5ADX K;  4AYI D;  3QRA A;  3SYS A;  3POQ A;  5ADX L;  4E1T A;  2OMF A;  2O4D A;  1ZHW A;  4F4B A;  2Y7S A;  1IZN A;  4BUM X;  4AKR A;  4C69 X;  1MM4 A;  4AUI A;  1ORM A;  4AYE C;  2XMX A;  1GFM A;  3AA6 B;  4RJW A;  2Y0H A;  3VE2 A;  3AA0 A;  3VY9 X;  1Q9G A;  2K4T A;  4O4U A;  4XNK A;  4AYM C;  3SZV A;  2ZFG A;  3T24 A;  3PQS A;  3AAA B;  1OSM A;  4O3Z A;  5FVN A;  3T20 A;  5DL8 A;  3SY9 A;  4RLC A;  3QRC A;  5JDP A;  4O49 A;  4JFB A;  1H6S 1;  1GFQ A;  4O3Y A;  4GHB A;  3AA1 B;  3AA6 A;  2N2M A;  3HOE A;  2KXP B;  3VE1 A;  1Q9F A;  3AA7 A;  4FES A;  4GF4 A;  2J1N A;  1QJ9 A;  4KR4 A;  3BEY A;  4PUX A;  2Q0T A;  3AAA A;  8PRN A;  4D64 A;  2JN8 A;  3POR A;  1OPF A;  3VY8 X;  1QJP A;  2Y0L A;  3NSG A;  4LSH A;  1HXT A;  1GFN A;  3AA1 A;  2W81 C;  5G26 A;  2XE5 A;  1HXX A;  4G76 A;  5DIK A;  5D5D A;  4FSO A;  3LK3 A;  3LVY A;  2KXP A;  1GU9 A;  1PHO A;  1ZHT A;  2PRN A;  3K19 A;  1E54 A;  2YNK A;  3VZU X;  7PRN A;  3V8U A;  1VKE A;  1BXW A;  3LK2 B;  2ERV A;  4KRA A;  4LSE A;  4XNL A;  3SYB A;  1P8C A;  1P4T A;  2ODJ A;  3G7G A;  2J4U P;  5PRN A;  4G9Q A;  1KNC A;  3LK4 2;  2X27 X;  2XTR A;  4FZN A;  4N59 A;  4FRT A;  2KZ7 B;  2F1T A;  1GFP A;  4Z3T A;  2LFU A;  3HW9 A;  4KR8 A;  4LSF A;  4O3W A;  4D5U A;  4GCS A;  3LK2 A;  2XE2 A;  4FZM A;  4D65 A;  5T5F A;  2IJC A;  2JMM A;  1PRN A;  1ZHY A;  3GP6 A;  4AYN A;  4FT6 A;  4GCP A;  3D7I A;  4LSI A;  4JCH A;  4FUV A;  3LK4 1;  3SZD A;  4E1S A;  1YS5 A;  2F1V A;  5DIP A;  4QQ1 A;  4B61 A;  3JTY A;  2KZ7 A;  2O4V A;  3UPG A;  4O4X A;  3T0S A;  3KVD D;  2N2L A;  1G90 A;  2XG6 A;  1MM5 A;  4RL9 A;  3EMN X;  1LW1 A;  2PRR A;  1IZN B;  3DA4 A;  2XTQ A;  3RBH A;  3WI5 A;  1MPF A;  5DL7 A;  3SY7 A;  4AKR B;  5IYU A;  4AKM A;  2KDY A;  1QJ8 A;  4FZL A;  4RLB A;  3A2S X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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