3LK41

Crystal structure of capz bound to the uncapping motif from cd2ap
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
269
structure length
269
Chain Sequence
b'VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords F-actin-capping protein subunit alpha-1
publication title Structural characterization of a capping protein interaction motif defines a family of actin filament regulators
doi rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 85
structure length 269
sequence length 269
chains with identical sequence 4, 7, A, D, G, J, M, P, S, V, Y
ec nomenclature
pdb deposition date 2010-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
1 PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3lk4101
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3lk4102
5ADXL 3AA6B 4AKRA 2KXPB 3AA6A 3LK42 3AA1B 2KXPA 3LK2B 3AA1A 5AFUK 3LK2A 3LK41 3AAEB 3AAEA 2KZ7B 5ADXK 3AA7B 3AA0B 5AFUL 2KZ7A 3AA0A 3LK3B 3AA7A 3AAAB 3LK3A 1IZNB 1IZNA 3AAAA 4AKRB
chains in the Genus database with same CATH superfamily
1T16A 4PJ0O 1PHOA 3LVYA 4C4VB 4F4BA 5AFUK 1P8CA 3BEYA 3HWBA 3C5OA 2MNHA 5G39A 1QJPA 3FYXA 3PGRA 1KNCA 4AYMC 1OPFA 4FZMA 2R4LA 4GHBA 2F1CX 1QJ8A 1IZNA 3T24A 3AA6B 2R4NA 1OSMA 4O4UA 2XTRA 3DWNA 3T20A 8PRNA 1P4TA 2GE4A 2ES9A 1MM5A 4D5UA 3HOLA 2XE5A 2OUWA 1PRNA 4AYEC 2J4UP 1ZHXA 2OMFA 2KXPA 3AA1A 3BS0A 4KR8A 2Y7SA 2R4OA 4FZNA 4FT6A 4FRXA 5T5FA 5B66O 4D65A 1ZHZA 2GMYA 1BXWA 4FMSA 4BUMX 4AUIA 4RJXA 2KC0A 1HXUA 3AA7A 1Q9GA 2PRRA 2F1TA 1GFMA 5ADXL 5DL8A 3LK42 2IWVA 4O3WA 3LK2B 3QRAA 4RJWA 2WJRA 2LHFA 2O4VA 3O0EA 4RLBA 3SY7A 2ZFGA 1GFPA 3PORA 4JFBA 2PRNA 3A0HO 3HW9A 4N58A 4JCHA 2Y0HA 3WI4A 2WVPA 3LK41 3DA4A 5G38A 1H6S1 5ADXK 4O49A 3HOEA 4C69X 4Z3TA 1ZHWA 4C4VA 4AYNA 4LSFA 5H2FO 5E79O 4AYDC 4IL6O 2M07A 3VZWX 4PR7A 2R4PA 4N59A 4GF4A 4O3YA 3D7IA 5JDPA 5KAFO 2ZLDA 3PQUA 3AA6A 2Y0KA 2W81C 5TISO 4FZLA 2AF7A 3V8UA 3JTYA 1GU9A 1GFNA 5B5EO 3VY9X 1HXTA 4E1TA 4G76A 2XMXA 1E54A 1HXXA 1BH3A 2F1VA 3SY9A 4G75A 3JCUO 4FUVA 3UU2A 2PFXA 5KAIO 2LFUA 2FGRA 2M06A 3LK3B 3DZMA 3VZUX 4LSIA 4O3ZA 3AAAA 5PRNA 4FSPA 3NJTA 2Y0LA 2CWQA 3LK2A 2QTKA 2YPVA 3AAEB 2Q0TA 1T1LA 2X9KA 5D5DA 3A2SX 3DA3A 3PGUA 3SYSA 3AA7B 3AA0B 4AYID 2KZ7A 2XTQA 3T0SA 4U9CA 4GCSA 4AKRB 1G90A 3PGSA 4FSOA 4C00A 2XE1A 2OYOA 2R8AA 4E1SA 3PRNA 3TZGA 5IYUA 2XG6A 5AFUL 3NSGA 2XE2A 2JMMA 4QQ1A 4FOZA 5DIPA 1GFOA 2Y2XA 4G9QA 3RBHA 4K3BA 4LSHA 2X27X 2QEUA 4FESA 2ERVA 2WJQA 1ZHTA 4XNLA 3QRCA 1THQA 2JQYA 4XNKA 3VE1A 2JN8A 4B61A 1S5LO 2AXTO 2PORA 2N2MA 4AKMA 2MHLA 4CTDA 4UB8O 4O4XA 3POUA 7PRNA 3C1LA 4GCPA 6PRNA 2J1NA 4GCQA 3WU2O 1IZNB 3EMNX 5G26A 3VY8X 3K19A 2IWWA 2KDYA 4FRTA 4AFKA 4RL9A 3POQA 2YNKA 4FQEA 3WI5A 1Q9FA 4N74A 2FGQX 3KZIO 3POXA 5DIKA 1ORMA 3VE2A 4AZLA 1ZHYA 1MPFA 3KVDD 3LK3A 3PQSA 2ODJA 3SZDA 2KXPB 5DL7A 3AA1B 2N2LA 5DL5A 5GTHO 3DWOX 4RLCA 3AAEA 2XE3A 5GTIO 3PF1A 5GV0A 3AA0A 3AAAB 3BRYA 4D64A 2W80C 3UPGA 1LW1A 5G3AA 4AKRA 3UAQA 1YS5A 3BRZA 3A0BO 1ME5A 1GFQA 2KZ7B 2R88A 4UB6O 3SZVA 2K4TA 4K3CA 5FVNA 3VZTX 2K0LA 1MM4A 2R89A 4PUXA 4KRAA 4LSEA 4O3XB 3SYBA 3GP6A 2IJCA 1VKEA 4N75A 5EE2A 1QJ9A 5DL6A 3G7GA 2O4DA 1BT9A 4KR4A
chains in the Genus database with same CATH topology
4N58A 4JCHA 4AFKA 2Y0HA 1PHOA 4RL9A 3LVYA 5PRNA 3POQA 4FSPA 3WI4A 4F4BA 2Y0LA 5AFUK 2CWQA 1P8CA 3BEYA 1Q9FA 3LK2A 2QTKA 2YNKA 2YPVA 3WI5A 3LK41 3AAEB 2Q0TA 2FGQX 3HWBA 3C5OA 5D5DA 2MNHA 3DA4A 3POXA 5DIKA 1H6S1 1ORMA 1QJPA 3A2SX 3VE2A 3DA3A 5ADXK 4O49A 3SYSA 3AA7B 3AA0B 4AYID 4AZLA 2KZ7A 3FYXA 1ZHYA 1KNCA 2XTQA 4AYMC 1MPFA 3KVDD 1OPFA 4FZMA 3T0SA 3LK3A 4GHBA 4U9CA 1QJ8A 1IZNA 4GCSA 3PQSA 2ODJA 4AKRB 3T24A 3AA6B 3HOEA 3SZDA 2KXPB 4C69X 1G90A 1OSMA 4FSOA 3AA1B 4O4UA 2XE1A 5DL7A 4Z3TA 2OYOA 2XTRA 1ZHWA 4E1SA 3PRNA 3TZGA 2N2LA 5DL5A 4RLCA 3T20A 3AAEA 4AYNA 4LSFA 5IYUA 2XE3A 8PRNA 4AYDC 2XG6A 1P4TA 2M07A 3VZWX 5AFUL 5GV0A 3AA0A 2GE4A 3NSGA 2XE2A 2JMMA 3AAAB 4QQ1A 4N59A 2ES9A 4GF4A 2W80C 4O3YA 4D64A 3D7IA 1LW1A 1MM5A 4FOZA 3HOLA 5DIPA 4D5UA 3UPGA 5JDPA 2XE5A 2OUWA 4AKRA 1PRNA 1GFOA 2ZLDA 4AYEC 1ZHXA 2J4UP 3PQUA 3AA6A 3UAQA 2Y0KA 2OMFA 2KXPA 2W81C 1YS5A 4FZLA 3AA1A 4KR8A 2Y7SA 4FZNA 2Y2XA 4FT6A 2AF7A 1ME5A 4FRXA 3V8UA 5T5FA 4D65A 3JTYA 4G9QA 1GFQA 1ZHZA 2KZ7B 3RBHA 2GMYA 1GU9A 4LSHA 1BXWA 2X27X 4FMSA 4BUMX 4AUIA 1GFNA 3SZVA 4RJXA 2K4TA 2QEUA 2KC0A 1HXUA 4FESA 3VY9X 3AA7A 5FVNA 3VZTX 2K0LA 2ERVA 1MM4A 1ZHTA 1Q9GA 4XNLA 2PRRA 1HXTA 2F1TA 4E1TA 1GFMA 2XMXA 3QRCA 4G76A 4PUXA 5ADXL 1THQA 4KRAA 4LSEA 5DL8A 4O3XB 3LK42 3GP6A 4O3WA 4XNKA 2JN8A 1E54A 3SYBA 3LK2B 3VE1A 1HXXA 3QRAA 4B61A 2IJCA 4RJWA 1VKEA 1BH3A 2F1VA 2PORA 2N2MA 3SY9A 5EE2A 4AKMA 2LHFA 2O4VA 4G75A 2MHLA 4FUVA 1QJ9A 2PFXA 3POUA 3O0EA 3C1LA 4O4XA 3UU2A 2LFUA 7PRNA 4GCPA 4RLBA 3SY7A 2FGRA 5DL6A 2M06A 2ZFGA 3G7GA 2J1NA 1GFPA 3LK3B 3PORA 2O4DA 4JFBA 6PRNA 4GCQA 1BT9A 1IZNB 3EMNX 4LSIA 5G26A 3VY8X 3VZUX 2PRNA 4KR4A 4O3ZA 3AAAA 3K19A 3HW9A 2KDYA 4FRTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5ADX L;  3AA6 B;  4AKR A;  2KXP B;  3AA6 A;  3LK4 2;  3AA1 B;  2KXP A;  3LK2 B;  3AA1 A;  5AFU K;  3LK2 A;  3LK4 1;  3AAE B;  3AAE A;  2KZ7 B;  5ADX K;  3AA7 B;  3AA0 B;  5AFU L;  2KZ7 A;  3AA0 A;  3LK3 B;  3AA7 A;  3AAA B;  3LK3 A;  1IZN B;  1IZN A;  3AAA A;  4AKR B; 
#chains in the Genus database with same CATH topology
 1T16 A;  4PJ0 O;  1PHO A;  3LVY A;  4C4V B;  4F4B A;  5AFU K;  1P8C A;  3BEY A;  3HWB A;  3C5O A;  2MNH A;  5G39 A;  1QJP A;  3FYX A;  3PGR A;  1KNC A;  4AYM C;  1OPF A;  4FZM A;  2R4L A;  4GHB A;  2F1C X;  1QJ8 A;  1IZN A;  3T24 A;  3AA6 B;  2R4N A;  1OSM A;  4O4U A;  2XTR A;  3DWN A;  3T20 A;  8PRN A;  1P4T A;  2GE4 A;  2ES9 A;  1MM5 A;  4D5U A;  3HOL A;  2XE5 A;  2OUW A;  1PRN A;  4AYE C;  2J4U P;  1ZHX A;  2OMF A;  2KXP A;  3AA1 A;  3BS0 A;  4KR8 A;  2Y7S A;  2R4O A;  4FZN A;  4FT6 A;  4FRX A;  5T5F A;  5B66 O;  4D65 A;  1ZHZ A;  2GMY A;  1BXW A;  4FMS A;  4BUM X;  4AUI A;  4RJX A;  2KC0 A;  1HXU A;  3AA7 A;  1Q9G A;  2PRR A;  2F1T A;  1GFM A;  5ADX L;  5DL8 A;  3LK4 2;  2IWV A;  4O3W A;  3LK2 B;  3QRA A;  4RJW A;  2WJR A;  2LHF A;  2O4V A;  3O0E A;  4RLB A;  3SY7 A;  2ZFG A;  1GFP A;  3POR A;  4JFB A;  2PRN A;  3A0H O;  3HW9 A;  4N58 A;  4JCH A;  2Y0H A;  3WI4 A;  2WVP A;  3LK4 1;  3DA4 A;  5G38 A;  1H6S 1;  5ADX K;  4O49 A;  3HOE A;  4C69 X;  4Z3T A;  1ZHW A;  4C4V A;  4AYN A;  4LSF A;  5H2F O;  5E79 O;  4AYD C;  4IL6 O;  2M07 A;  3VZW X;  4PR7 A;  2R4P A;  4N59 A;  4GF4 A;  4O3Y A;  3D7I A;  5JDP A;  5KAF O;  2ZLD A;  3PQU A;  3AA6 A;  2Y0K A;  2W81 C;  5TIS O;  4FZL A;  2AF7 A;  3V8U A;  3JTY A;  1GU9 A;  1GFN A;  5B5E O;  3VY9 X;  1HXT A;  4E1T A;  4G76 A;  2XMX A;  1E54 A;  1HXX A;  1BH3 A;  2F1V A;  3SY9 A;  4G75 A;  3JCU O;  4FUV A;  3UU2 A;  2PFX A;  5KAI O;  2LFU A;  2FGR A;  2M06 A;  3LK3 B;  3DZM A;  3VZU X;  4LSI A;  4O3Z A;  3AAA A;  5PRN A;  4FSP A;  3NJT A;  2Y0L A;  2CWQ A;  3LK2 A;  2QTK A;  2YPV A;  3AAE B;  2Q0T A;  1T1L A;  2X9K A;  5D5D A;  3A2S X;  3DA3 A;  3PGU A;  3SYS A;  3AA7 B;  3AA0 B;  4AYI D;  2KZ7 A;  2XTQ A;  3T0S A;  4U9C A;  4GCS A;  4AKR B;  1G90 A;  3PGS A;  4FSO A;  4C00 A;  2XE1 A;  2OYO A;  2R8A A;  4E1S A;  3PRN A;  3TZG A;  5IYU A;  2XG6 A;  5AFU L;  3NSG A;  2XE2 A;  2JMM A;  4QQ1 A;  4FOZ A;  5DIP A;  1GFO A;  2Y2X A;  4G9Q A;  3RBH A;  4K3B A;  4LSH A;  2X27 X;  2QEU A;  4FES A;  2ERV A;  2WJQ A;  1ZHT A;  4XNL A;  3QRC A;  1THQ A;  2JQY A;  4XNK A;  3VE1 A;  2JN8 A;  4B61 A;  1S5L O;  2AXT O;  2POR A;  2N2M A;  4AKM A;  2MHL A;  4CTD A;  4UB8 O;  4O4X A;  3POU A;  7PRN A;  3C1L A;  4GCP A;  6PRN A;  2J1N A;  4GCQ A;  3WU2 O;  1IZN B;  3EMN X;  5G26 A;  3VY8 X;  3K19 A;  2IWW A;  2KDY A;  4FRT A;  4AFK A;  4RL9 A;  3POQ A;  2YNK A;  4FQE A;  3WI5 A;  1Q9F A;  4N74 A;  2FGQ X;  3KZI O;  3POX A;  5DIK A;  1ORM A;  3VE2 A;  4AZL A;  1ZHY A;  1MPF A;  3KVD D;  3LK3 A;  3PQS A;  2ODJ A;  3SZD A;  2KXP B;  5DL7 A;  3AA1 B;  2N2L A;  5DL5 A;  5GTH O;  3DWO X;  4RLC A;  3AAE A;  2XE3 A;  5GTI O;  3PF1 A;  5GV0 A;  3AA0 A;  3AAA B;  3BRY A;  4D64 A;  2W80 C;  3UPG A;  1LW1 A;  5G3A A;  4AKR A;  3UAQ A;  1YS5 A;  3BRZ A;  3A0B O;  1ME5 A;  1GFQ A;  2KZ7 B;  2R88 A;  4UB6 O;  3SZV A;  2K4T A;  4K3C A;  5FVN A;  3VZT X;  2K0L A;  1MM4 A;  2R89 A;  4PUX A;  4KRA A;  4LSE A;  4O3X B;  3SYB A;  3GP6 A;  2IJC A;  1VKE A;  4N75 A;  5EE2 A;  1QJ9 A;  5DL6 A;  3G7G A;  2O4D A;  1BT9 A;  4KR4 A; 
#chains in the Genus database with same CATH homology
 4N58 A;  4JCH A;  4AFK A;  2Y0H A;  1PHO A;  4RL9 A;  3LVY A;  5PRN A;  3POQ A;  4FSP A;  3WI4 A;  4F4B A;  2Y0L A;  5AFU K;  2CWQ A;  1P8C A;  3BEY A;  1Q9F A;  3LK2 A;  2QTK A;  2YNK A;  2YPV A;  3WI5 A;  3LK4 1;  3AAE B;  2Q0T A;  2FGQ X;  3HWB A;  3C5O A;  5D5D A;  2MNH A;  3DA4 A;  3POX A;  5DIK A;  1H6S 1;  1ORM A;  1QJP A;  3A2S X;  3VE2 A;  3DA3 A;  5ADX K;  4O49 A;  3SYS A;  3AA7 B;  3AA0 B;  4AYI D;  4AZL A;  2KZ7 A;  3FYX A;  1ZHY A;  1KNC A;  2XTQ A;  4AYM C;  1MPF A;  3KVD D;  1OPF A;  4FZM A;  3T0S A;  3LK3 A;  4GHB A;  4U9C A;  1QJ8 A;  1IZN A;  4GCS A;  3PQS A;  2ODJ A;  4AKR B;  3T24 A;  3AA6 B;  3HOE A;  3SZD A;  2KXP B;  4C69 X;  1G90 A;  1OSM A;  4FSO A;  3AA1 B;  4O4U A;  2XE1 A;  5DL7 A;  4Z3T A;  2OYO A;  2XTR A;  1ZHW A;  4E1S A;  3PRN A;  3TZG A;  2N2L A;  5DL5 A;  4RLC A;  3T20 A;  3AAE A;  4AYN A;  4LSF A;  5IYU A;  2XE3 A;  8PRN A;  4AYD C;  2XG6 A;  1P4T A;  2M07 A;  3VZW X;  5AFU L;  5GV0 A;  3AA0 A;  2GE4 A;  3NSG A;  2XE2 A;  2JMM A;  3AAA B;  4QQ1 A;  4N59 A;  2ES9 A;  4GF4 A;  2W80 C;  4O3Y A;  4D64 A;  3D7I A;  1LW1 A;  1MM5 A;  4FOZ A;  3HOL A;  5DIP A;  4D5U A;  3UPG A;  5JDP A;  2XE5 A;  2OUW A;  4AKR A;  1PRN A;  1GFO A;  2ZLD A;  4AYE C;  1ZHX A;  2J4U P;  3PQU A;  3AA6 A;  3UAQ A;  2Y0K A;  2OMF A;  2KXP A;  2W81 C;  1YS5 A;  4FZL A;  3AA1 A;  4KR8 A;  2Y7S A;  4FZN A;  2Y2X A;  4FT6 A;  2AF7 A;  1ME5 A;  4FRX A;  3V8U A;  5T5F A;  4D65 A;  3JTY A;  4G9Q A;  1GFQ A;  1ZHZ A;  2KZ7 B;  3RBH A;  2GMY A;  1GU9 A;  4LSH A;  1BXW A;  2X27 X;  4FMS A;  4BUM X;  4AUI A;  1GFN A;  3SZV A;  4RJX A;  2K4T A;  2QEU A;  2KC0 A;  1HXU A;  4FES A;  3VY9 X;  3AA7 A;  5FVN A;  3VZT X;  2K0L A;  2ERV A;  1MM4 A;  1ZHT A;  1Q9G A;  4XNL A;  2PRR A;  1HXT A;  2F1T A;  4E1T A;  1GFM A;  2XMX A;  3QRC A;  4G76 A;  4PUX A;  5ADX L;  1THQ A;  4KRA A;  4LSE A;  5DL8 A;  4O3X B;  3LK4 2;  3GP6 A;  4O3W A;  4XNK A;  2JN8 A;  1E54 A;  3SYB A;  3LK2 B;  3VE1 A;  1HXX A;  3QRA A;  4B61 A;  2IJC A;  4RJW A;  1VKE A;  1BH3 A;  2F1V A;  2POR A;  2N2M A;  3SY9 A;  5EE2 A;  4AKM A;  2LHF A;  2O4V A;  4G75 A;  2MHL A;  4FUV A;  1QJ9 A;  2PFX A;  3POU A;  3O0E A;  3C1L A;  4O4X A;  3UU2 A;  2LFU A;  7PRN A;  4GCP A;  4RLB A;  3SY7 A;  2FGR A;  5DL6 A;  2M06 A;  2ZFG A;  3G7G A;  2J1N A;  1GFP A;  3LK3 B;  3POR A;  2O4D A;  4JFB A;  6PRN A;  4GCQ A;  1BT9 A;  1IZN B;  3EMN X;  4LSI A;  5G26 A;  3VY8 X;  3VZU X;  2PRN A;  4KR4 A;  4O3Z A;  3AAA A;  3K19 A;  3HW9 A;  2KDY A;  4FRT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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