3LK41

Crystal structure of capz bound to the uncapping motif from cd2ap
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
269
structure length
269
Chain Sequence
VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords F-actin-capping protein subunit alpha-1
publication title Structural characterization of a capping protein interaction motif defines a family of actin filament regulators
doi rcsb
source organism Gallus gallus
total genus 85
structure length 269
sequence length 269
chains with identical sequence 4, 7, A, D, G, J, M, P, S, V, Y
ec nomenclature
pdb deposition date 2010-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
1 PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3lk4101
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3lk4102
5AFUK 3LK2B 3LK42 3AA6B 3AA7A 3AAEA 4AKRB 2KXPB 3AA1B 1IZNB 3AA7B 3AA0B 5AFUL 3AAAA 3AAEB 5ADXK 3LK3A 2KZ7A 3AAAB 3LK2A 3LK41 3AA6A 3LK3B 3AA0A 4AKRA 5ADXL 2KXPA 3AA1A 1IZNA 2KZ7B
chains in the Genus database with same CATH superfamily
4FZMA 2AXTO 4O4XA 3AAEA 3VZTX 3LVYA 4C00A 3UU2A 1S5LO 3AA1B 2J1NA 3POUA 2JMMA 2KC0A 3K19A 3DA3A 1YS5A 1BH3A 5FVNA 1HXXA 2XE1A 5ADXL 2F1CX 2O4DA 3EMNX 2GMYA 1T16A 1ZHTA 1ZHZA 2PFXA 3AA7B 4LSEA 2R4PA 1T1LA 2XG6A 1ME5A 4FSOA 1QJ8A 2ERVA 2Y0LA 5DIPA 1MM5A 5AFUK 3POXA 2R4OA 4AYID 4AKRB 1HXTA 2ODJA 4FRTA 3KVDD 4XNLA 1GFOA 4GHBA 1Q9FA 4AYNA 5PRNA 4C4VB 2N2MA 3PGUA 1P8CA 3C1LA 4FMSA 4G75A 3A0HO 2K4TA 1P4TA 2MHLA 4AKMA 4O3WA 5AFUL 3NJTA 3LK3A 4FSPA 4AYDC 4RLBA 3AAAB 3A0BO 5G26A 4AUIA 1Q9GA 2FGQX 3SZVA 3VY9X 3JCUO 1HXUA 1IZNB 4FOZA 3BRYA 2ZFGA 2QEUA 4GF4A 5G38A 4U9CA 2M07A 3SZDA 2R8AA 3AA6A 2YPVA 4O3XB 4LSHA 4FRXA 2KXPA 2KZ7B 3LK42 1BXWA 1THQA 3HOEA 5IYUA 4FUVA 4GCQA 3JTYA 4FZLA 2X27X 2W81C 5DL8A 5DL5A 5B5EO 3LK2A 2OUWA 4KR8A 1GFQA 4PUXA 1OSMA 2Q0TA 3SY9A 4G9QA 3FYXA 4FT6A 5DIKA 2K0LA 2R88A 5EE2A 2F1TA 2KDYA 2MNHA 4UB8O 3DZMA 4K3BA 5DL7A 3WU2O 3A2SX 4Z3TA 2IWWA 2AF7A 4JFBA 3AA0B 3V8UA 2ES9A 5TISO 3QRAA 5GV0A 2XTRA 3AAEB 3TZGA 4N59A 2R89A 5H2FO 1G90A 4KR4A 3KZIO 2W80C 1ZHWA 2M06A 3GP6A 5GTHO 2Y7SA 3VZUX 4K3CA 1QJ9A 2JQYA 4UB6O 3UPGA 2WJRA 3SYBA 2O4VA 2X9KA 4O3ZA 3UAQA 3AA1A 4BUMX 1PHOA 4AZLA 5DL6A 3C5OA 5E79O 3VE1A 3WI4A 2JN8A 2WJQA 2OYOA 1GFNA 4GCPA 8PRNA 3G7GA 3HWBA 4D65A 2IWVA 1ORMA 3AA7A 2J4UP 3PF1A 1KNCA 1QJPA 4D5UA 5GTIO 2CWQA 3PRNA 3BEYA 3NSGA 1PRNA 4KRAA 4FZNA 3DA4A 1ZHYA 4IL6O 3DWNA 3T24A 2FGRA 2YNKA 3LK3B 3PGSA 4CTDA 4AKRA 4XNKA 2Y2XA 1GFMA 3VZWX 3QRCA 3HOLA 4C4VA 2IJCA 2PRNA 3WI5A 2LFUA 3HW9A 2XTQA 3PQUA 4LSFA 3PGRA 4O49A 4N75A 3POQA 3VE2A 4PJ0O 4G76A 3AA6B 4O4UA 2OMFA 1OPFA 2KXPB 5B66O 4AFKA 2PRRA 3AAAA 2F1VA 3D7IA 2QTKA 1E54A 3RBHA 1IZNA 2WVPA 3LK2B 3SYSA 1LW1A 4RL9A 1ZHXA 2XE5A 2Y0KA 3DWOX 4N58A 2Y0HA 4GCSA 5D5DA 4N74A 2KZ7A 3BRZA 4AYEC 2GE4A 1MM4A 2XE3A 5KAFO 3SY7A 6PRNA 4E1SA 3PQSA 4E1TA 5T5FA 3BS0A 4F4BA 2PORA 3O0EA 4RJXA 7PRNA 3T20A 3T0SA 2XE2A 5JDPA 4AYMC 4JCHA 4O3YA 3PORA 3LK41 1BT9A 5KAIO 2R4NA 1MPFA 5G3AA 1GU9A 1VKEA 4C69X 2ZLDA 4QQ1A 1GFPA 2LHFA 2XMXA 5G39A 4PR7A 4RJWA 4RLCA 4FESA 5ADXK 2R4LA 4LSIA 2N2LA 3VY8X 4D64A 1H6S1 4FQEA 4B61A 3AA0A
chains in the Genus database with same CATH topology
2M06A 4G76A 3GP6A 3SZVA 4FZMA 2Y7SA 3AA6B 3VZUX 4O4XA 3AAEA 3VY9X 4O4UA 3VZTX 3LVYA 3UU2A 2OMFA 1HXUA 1OPFA 1IZNB 2KXPB 1QJ9A 3AA1B 4FOZA 2J1NA 4AFKA 3POUA 3UPGA 2PRRA 3AAAA 2ZFGA 2JMMA 2QEUA 2KC0A 2F1VA 3K19A 3SYBA 4GF4A 3DA3A 2O4VA 4U9CA 3D7IA 2M07A 2QTKA 1YS5A 3SZDA 4O3ZA 1BH3A 3AA6A 2YPVA 4O3XB 1E54A 5FVNA 3UAQA 4LSHA 1HXXA 2XE1A 3RBHA 4FRXA 2KXPA 3AA1A 1IZNA 4BUMX 5ADXL 2KZ7B 3LK2B 7PRNA 1PHOA 3LK42 2O4DA 1BXWA 3EMNX 2GMYA 3SYSA 1LW1A 1THQA 4AZLA 5DL6A 3C5OA 3VE1A 4LSEA 2PFXA 1ZHTA 1ZHZA 3AA7B 3HOEA 1ZHXA 2XE5A 2Y0KA 4FUVA 2JN8A 3WI4A 5IYUA 4GCQA 3JTYA 4N58A 2OYOA 2Y0HA 1GFNA 4FZLA 4GCPA 2X27X 2W81C 4GCSA 5DL8A 2XG6A 5D5DA 8PRNA 1ME5A 4FSOA 3G7GA 3HWBA 5DL5A 4D65A 1QJ8A 2KZ7A 3LK2A 2OUWA 2ERVA 4AYEC 2Y0LA 5DIPA 4KR8A 1GFQA 3AA0A 1MM5A 2GE4A 1OSMA 2Q0TA 1MM4A 4PUXA 3SY9A 4G9QA 2XE3A 1ORMA 3AA7A 2J4UP 3FYXA 5AFUK 3POXA 1KNCA 1QJPA 4D5UA 3SY7A 6PRNA 4AYID 2CWQA 4AKRB 4E1SA 3PRNA 3PQSA 4E1TA 1HXTA 5T5FA 4F4BA 3BEYA 4FT6A 2ODJA 2PORA 3NSGA 5DIKA 1PRNA 3KVDD 3O0EA 2K0LA 4FRTA 4RJXA 1GFOA 4KRAA 4XNLA 3T20A 5EE2A 4GHBA 3T0SA 1Q9FA 4FZNA 2XE2A 2F1TA 2KDYA 2MNHA 5JDPA 3DA4A 4AYMC 4AYNA 1ZHYA 4JCHA 5PRNA 4O3YA 3T24A 3PORA 3LK41 2N2MA 1BT9A 2FGRA 2YNKA 3LK3B 4AKRA 4XNKA 1MPFA 2Y2XA 1GU9A 1P8CA 3C1LA 1VKEA 5DL7A 4Z3TA 3A2SX 4FMSA 4C69X 1GFMA 4G75A 3VZWX 2AF7A 2ZLDA 3QRCA 4JFBA 4QQ1A 3AA0B 3HOLA 3V8UA 1GFPA 2ES9A 2K4TA 1P4TA 2LHFA 2MHLA 3QRAA 4AKMA 4B61A 2XMXA 4O3WA 5GV0A 2XTRA 2IJCA 3AAEB 4RJWA 5AFUL 4RLCA 4RL9A 4FESA 2PRNA 5ADXK 3WI5A 3LK3A 4LSIA 2LFUA 3HW9A 4FSPA 2XTQA 3TZGA 4AYDC 4RLBA 3PQUA 2N2LA 4LSFA 4N59A 3VY8X 4D64A 3AAAB 4O49A 1H6S1 1G90A 3POQA 5G26A 3VE2A 4KR4A 4AUIA 1Q9GA 2W80C 1ZHWA 2FGQX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AFU K;  3LK2 B;  3LK4 2;  3AA6 B;  3AA7 A;  3AAE A;  4AKR B;  2KXP B;  3AA1 B;  1IZN B;  3AA7 B;  3AA0 B;  5AFU L;  3AAA A;  3AAE B;  5ADX K;  3LK3 A;  2KZ7 A;  3AAA B;  3LK2 A;  3LK4 1;  3AA6 A;  3LK3 B;  3AA0 A;  4AKR A;  5ADX L;  2KXP A;  3AA1 A;  1IZN A;  2KZ7 B; 
#chains in the Genus database with same CATH topology
 4FZM A;  2AXT O;  4O4X A;  3AAE A;  3VZT X;  3LVY A;  4C00 A;  3UU2 A;  1S5L O;  3AA1 B;  2J1N A;  3POU A;  2JMM A;  2KC0 A;  3K19 A;  3DA3 A;  1YS5 A;  1BH3 A;  5FVN A;  1HXX A;  2XE1 A;  5ADX L;  2F1C X;  2O4D A;  3EMN X;  2GMY A;  1T16 A;  1ZHT A;  1ZHZ A;  2PFX A;  3AA7 B;  4LSE A;  2R4P A;  1T1L A;  2XG6 A;  1ME5 A;  4FSO A;  1QJ8 A;  2ERV A;  2Y0L A;  5DIP A;  1MM5 A;  5AFU K;  3POX A;  2R4O A;  4AYI D;  4AKR B;  1HXT A;  2ODJ A;  4FRT A;  3KVD D;  4XNL A;  1GFO A;  4GHB A;  1Q9F A;  4AYN A;  5PRN A;  4C4V B;  2N2M A;  3PGU A;  1P8C A;  3C1L A;  4FMS A;  4G75 A;  3A0H O;  2K4T A;  1P4T A;  2MHL A;  4AKM A;  4O3W A;  5AFU L;  3NJT A;  3LK3 A;  4FSP A;  4AYD C;  4RLB A;  3AAA B;  3A0B O;  5G26 A;  4AUI A;  1Q9G A;  2FGQ X;  3SZV A;  3VY9 X;  3JCU O;  1HXU A;  1IZN B;  4FOZ A;  3BRY A;  2ZFG A;  2QEU A;  4GF4 A;  5G38 A;  4U9C A;  2M07 A;  3SZD A;  2R8A A;  3AA6 A;  2YPV A;  4O3X B;  4LSH A;  4FRX A;  2KXP A;  2KZ7 B;  3LK4 2;  1BXW A;  1THQ A;  3HOE A;  5IYU A;  4FUV A;  4GCQ A;  3JTY A;  4FZL A;  2X27 X;  2W81 C;  5DL8 A;  5DL5 A;  5B5E O;  3LK2 A;  2OUW A;  4KR8 A;  1GFQ A;  4PUX A;  1OSM A;  2Q0T A;  3SY9 A;  4G9Q A;  3FYX A;  4FT6 A;  5DIK A;  2K0L A;  2R88 A;  5EE2 A;  2F1T A;  2KDY A;  2MNH A;  4UB8 O;  3DZM A;  4K3B A;  5DL7 A;  3WU2 O;  3A2S X;  4Z3T A;  2IWW A;  2AF7 A;  4JFB A;  3AA0 B;  3V8U A;  2ES9 A;  5TIS O;  3QRA A;  5GV0 A;  2XTR A;  3AAE B;  3TZG A;  4N59 A;  2R89 A;  5H2F O;  1G90 A;  4KR4 A;  3KZI O;  2W80 C;  1ZHW A;  2M06 A;  3GP6 A;  5GTH O;  2Y7S A;  3VZU X;  4K3C A;  1QJ9 A;  2JQY A;  4UB6 O;  3UPG A;  2WJR A;  3SYB A;  2O4V A;  2X9K A;  4O3Z A;  3UAQ A;  3AA1 A;  4BUM X;  1PHO A;  4AZL A;  5DL6 A;  3C5O A;  5E79 O;  3VE1 A;  3WI4 A;  2JN8 A;  2WJQ A;  2OYO A;  1GFN A;  4GCP A;  8PRN A;  3G7G A;  3HWB A;  4D65 A;  2IWV A;  1ORM A;  3AA7 A;  2J4U P;  3PF1 A;  1KNC A;  1QJP A;  4D5U A;  5GTI O;  2CWQ A;  3PRN A;  3BEY A;  3NSG A;  1PRN A;  4KRA A;  4FZN A;  3DA4 A;  1ZHY A;  4IL6 O;  3DWN A;  3T24 A;  2FGR A;  2YNK A;  3LK3 B;  3PGS A;  4CTD A;  4AKR A;  4XNK A;  2Y2X A;  1GFM A;  3VZW X;  3QRC A;  3HOL A;  4C4V A;  2IJC A;  2PRN A;  3WI5 A;  2LFU A;  3HW9 A;  2XTQ A;  3PQU A;  4LSF A;  3PGR A;  4O49 A;  4N75 A;  3POQ A;  3VE2 A;  4PJ0 O;  4G76 A;  3AA6 B;  4O4U A;  2OMF A;  1OPF A;  2KXP B;  5B66 O;  4AFK A;  2PRR A;  3AAA A;  2F1V A;  3D7I A;  2QTK A;  1E54 A;  3RBH A;  1IZN A;  2WVP A;  3LK2 B;  3SYS A;  1LW1 A;  4RL9 A;  1ZHX A;  2XE5 A;  2Y0K A;  3DWO X;  4N58 A;  2Y0H A;  4GCS A;  5D5D A;  4N74 A;  2KZ7 A;  3BRZ A;  4AYE C;  2GE4 A;  1MM4 A;  2XE3 A;  5KAF O;  3SY7 A;  6PRN A;  4E1S A;  3PQS A;  4E1T A;  5T5F A;  3BS0 A;  4F4B A;  2POR A;  3O0E A;  4RJX A;  7PRN A;  3T20 A;  3T0S A;  2XE2 A;  5JDP A;  4AYM C;  4JCH A;  4O3Y A;  3POR A;  3LK4 1;  1BT9 A;  5KAI O;  2R4N A;  1MPF A;  5G3A A;  1GU9 A;  1VKE A;  4C69 X;  2ZLD A;  4QQ1 A;  1GFP A;  2LHF A;  2XMX A;  5G39 A;  4PR7 A;  4RJW A;  4RLC A;  4FES A;  5ADX K;  2R4L A;  4LSI A;  2N2L A;  3VY8 X;  4D64 A;  1H6S 1;  4FQE A;  4B61 A;  3AA0 A; 
#chains in the Genus database with same CATH homology
 2M06 A;  4G76 A;  3GP6 A;  3SZV A;  4FZM A;  2Y7S A;  3AA6 B;  3VZU X;  4O4X A;  3AAE A;  3VY9 X;  4O4U A;  3VZT X;  3LVY A;  3UU2 A;  2OMF A;  1HXU A;  1OPF A;  1IZN B;  2KXP B;  1QJ9 A;  3AA1 B;  4FOZ A;  2J1N A;  4AFK A;  3POU A;  3UPG A;  2PRR A;  3AAA A;  2ZFG A;  2JMM A;  2QEU A;  2KC0 A;  2F1V A;  3K19 A;  3SYB A;  4GF4 A;  3DA3 A;  2O4V A;  4U9C A;  3D7I A;  2M07 A;  2QTK A;  1YS5 A;  3SZD A;  4O3Z A;  1BH3 A;  3AA6 A;  2YPV A;  4O3X B;  1E54 A;  5FVN A;  3UAQ A;  4LSH A;  1HXX A;  2XE1 A;  3RBH A;  4FRX A;  2KXP A;  3AA1 A;  1IZN A;  4BUM X;  5ADX L;  2KZ7 B;  3LK2 B;  7PRN A;  1PHO A;  3LK4 2;  2O4D A;  1BXW A;  3EMN X;  2GMY A;  3SYS A;  1LW1 A;  1THQ A;  4AZL A;  5DL6 A;  3C5O A;  3VE1 A;  4LSE A;  2PFX A;  1ZHT A;  1ZHZ A;  3AA7 B;  3HOE A;  1ZHX A;  2XE5 A;  2Y0K A;  4FUV A;  2JN8 A;  3WI4 A;  5IYU A;  4GCQ A;  3JTY A;  4N58 A;  2OYO A;  2Y0H A;  1GFN A;  4FZL A;  4GCP A;  2X27 X;  2W81 C;  4GCS A;  5DL8 A;  2XG6 A;  5D5D A;  8PRN A;  1ME5 A;  4FSO A;  3G7G A;  3HWB A;  5DL5 A;  4D65 A;  1QJ8 A;  2KZ7 A;  3LK2 A;  2OUW A;  2ERV A;  4AYE C;  2Y0L A;  5DIP A;  4KR8 A;  1GFQ A;  3AA0 A;  1MM5 A;  2GE4 A;  1OSM A;  2Q0T A;  1MM4 A;  4PUX A;  3SY9 A;  4G9Q A;  2XE3 A;  1ORM A;  3AA7 A;  2J4U P;  3FYX A;  5AFU K;  3POX A;  1KNC A;  1QJP A;  4D5U A;  3SY7 A;  6PRN A;  4AYI D;  2CWQ A;  4AKR B;  4E1S A;  3PRN A;  3PQS A;  4E1T A;  1HXT A;  5T5F A;  4F4B A;  3BEY A;  4FT6 A;  2ODJ A;  2POR A;  3NSG A;  5DIK A;  1PRN A;  3KVD D;  3O0E A;  2K0L A;  4FRT A;  4RJX A;  1GFO A;  4KRA A;  4XNL A;  3T20 A;  5EE2 A;  4GHB A;  3T0S A;  1Q9F A;  4FZN A;  2XE2 A;  2F1T A;  2KDY A;  2MNH A;  5JDP A;  3DA4 A;  4AYM C;  4AYN A;  1ZHY A;  4JCH A;  5PRN A;  4O3Y A;  3T24 A;  3POR A;  3LK4 1;  2N2M A;  1BT9 A;  2FGR A;  2YNK A;  3LK3 B;  4AKR A;  4XNK A;  1MPF A;  2Y2X A;  1GU9 A;  1P8C A;  3C1L A;  1VKE A;  5DL7 A;  4Z3T A;  3A2S X;  4FMS A;  4C69 X;  1GFM A;  4G75 A;  3VZW X;  2AF7 A;  2ZLD A;  3QRC A;  4JFB A;  4QQ1 A;  3AA0 B;  3HOL A;  3V8U A;  1GFP A;  2ES9 A;  2K4T A;  1P4T A;  2LHF A;  2MHL A;  3QRA A;  4AKM A;  4B61 A;  2XMX A;  4O3W A;  5GV0 A;  2XTR A;  2IJC A;  3AAE B;  4RJW A;  5AFU L;  4RLC A;  4RL9 A;  4FES A;  2PRN A;  5ADX K;  3WI5 A;  3LK3 A;  4LSI A;  2LFU A;  3HW9 A;  4FSP A;  2XTQ A;  3TZG A;  4AYD C;  4RLB A;  3PQU A;  2N2L A;  4LSF A;  4N59 A;  3VY8 X;  4D64 A;  3AAA B;  4O49 A;  1H6S 1;  1G90 A;  3POQ A;  5G26 A;  3VE2 A;  4KR4 A;  4AUI A;  1Q9G A;  2W80 C;  1ZHW A;  2FGQ X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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