3LK41

Crystal structure of capz bound to the uncapping motif from cd2ap
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
269
structure length
269
Chain Sequence
VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords F-actin-capping protein subunit alpha-1
publication title Structural characterization of a capping protein interaction motif defines a family of actin filament regulators
doi rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 85
structure length 269
sequence length 269
chains with identical sequence 4, 7, A, D, G, J, M, P, S, V, Y
ec nomenclature
pdb deposition date 2010-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
1 PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3lk4101
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3lk4102
3LK3A 3AA0B 3AAEA 3AA1A 3AA6B 4AKRB 2KZ7B 3AA0A 5AFUK 3LK41 3AA6A 4AKRA 3LK42 2KZ7A 1IZNB 2KXPB 5ADXK 3AAAB 1IZNA 3LK2B 2KXPA 3AAAA 3AA7B 3LK2A 5AFUL 3AAEB 3LK3B 3AA7A 3AA1B 5ADXL
chains in the Genus database with same CATH superfamily
4FZMA 1PHOA 3VE2A 2IWVA 4O4XA 1GFNA 4GHBA 3T20A 2JQYA 4FSPA 3JCUO 5E79O 3AA7B 4UB6O 3HOLA 2Y7SA 2Y0LA 3PGSA 3HOEA 1QJ9A 4K3CA 4LSHA 4E1TA 5DL7A 1GU9A 4FT6A 2PORA 3PQSA 1S5LO 3UU2A 3KVDD 3WI4A 2JMMA 4AKMA 2O4VA 3VZTX 3SY9A 1ZHWA 3PQUA 1GFPA 3VY9X 2PRNA 2N2MA 3DA3A 4AKRB 2GMYA 3AA0A 2R89A 4RJWA 2QEUA 4O3WA 3BS0A 2M06A 5DIPA 3C5OA 3JTYA 2PRRA 2KXPB 2XE2A 2W81C 4AYNA 1T16A 3A2SX 3LK3B 2XMXA 3AA1B 4D5UA 2XE1A 7PRNA 4RL9A 3AA6B 4KRAA 3NSGA 2IWWA 3UPGA 2FGQX 1BT9A 2Y2XA 4AFKA 1ZHZA 1IZNA 4RJXA 3V8UA 3BRZA 1LW1A 3TZGA 4C69X 4UB8O 1VKEA 2F1CX 2ODJA 5PRNA 3T0SA 5AFUK 1Q9FA 4FMSA 2KC0A 3PRNA 1HXTA 3AAAB 4GF4A 4D64A 2J4UP 3O0EA 1PRNA 3D7IA 5DL6A 3PORA 3SY7A 3PF1A 1GFQA 3PGUA 5GTIO 5G26A 5DL8A 2PFXA 2IJCA 3LK41 2FGRA 1ME5A 2LHFA 1P4TA 4C00A 3PGRA 4FRTA 4N59A 3KZIO 4C4VA 3A0BO 2XE3A 3LK2A 2OMFA 4FUVA 2J1NA 2MNHA 4G9QA 1BH3A 3DWNA 5GV0A 2CWQA 4KR4A 4FRXA 4CTDA 5G38A 1MM5A 3EMNX 4RLBA 3K19A 4AYMC 3T24A 4K3BA 2WJRA 2AXTO 3POXA 2KZ7A 2LFUA 4O49A 2X9KA 4JFBA 1HXXA 5JDPA 5FVNA 4XNLA 3QRAA 8PRNA 3HWBA 2R4NA 2M07A 2JN8A 1E54A 4B61A 4N58A 1H6S1 5G3AA 2ZFGA 2N2LA 3AA7A 4XNKA 4AYEC 1Q9GA 2MHLA 3VZUX 2OYOA 4IL6O 4LSEA 2X27X 5H2FO 4N75A 3POUA 3POQA 4PJ0O 3UAQA 3A0HO 4QQ1A 3AA0B 2K0LA 4FOZA 2XG6A 3DWOX 1QJPA 2QTKA 4AKRA 2R88A 2F1TA 3BRYA 4AYID 4FZNA 2KXPA 2R4OA 4LSFA 3GP6A 4AUIA 4GCPA 3RBHA 3VY8X 4FESA 2O4DA 3LK3A 1T1LA 5IYUA 3AA1A 5KAFO 3LVYA 3C1LA 4O3YA 3AA6A 3SYBA 3WI5A 1IZNB 1OSMA 1KNCA 4PR7A 4LSIA 4E1SA 4BUMX 1ZHYA 5G39A 1HXUA 5EE2A 2Y0KA 2XTRA 4F4BA 5TISO 1BXWA 2ES9A 3QRCA 2F1VA 5ADXK 1ZHTA 4JCHA 2Q0TA 4GCSA 4O3ZA 3AAAA 1G90A 1P8CA 5B5EO 5AFUL 5DL5A 1MM4A 2R8AA 4AYDC 3AAEA 2ERVA 1MPFA 4FZLA 3WU2O 4FSOA 2Y0HA 1OPFA 4G75A 3LK42 3VE1A 2WJQA 1ZHXA 4FQEA 2ZLDA 4C4VB 3VZWX 4KR8A 2XTQA 5KAIO 3LK2B 2YPVA 2XE5A 3G7GA 3FYXA 4U9CA 3DZMA 2K4TA 5GTHO 3SZVA 1THQA 2R4LA 4GCQA 5DIKA 1ORMA 4G76A 4O4UA 4Z3TA 3DA4A 2OUWA 1GFOA 4RLCA 3SZDA 4O3XB 2AF7A 3NJTA 4D65A 2GE4A 2YNKA 2KZ7B 2R4PA 6PRNA 3BEYA 4AZLA 1YS5A 2KDYA 4N74A 5B66O 5D5DA 3SYSA 1QJ8A 3HW9A 2WVPA 1GFMA 3AAEB 4PUXA 2W80C 5T5FA 5ADXL
chains in the Genus database with same CATH topology
4FZMA 2Y0KA 2XTRA 4F4BA 1VKEA 2ODJA 1PHOA 1BXWA 5PRNA 2ES9A 3QRCA 3T0SA 2F1VA 3VE2A 5AFUK 2M07A 4O4XA 1Q9FA 1GFNA 4FMSA 2KC0A 2JN8A 4GHBA 5ADXK 1ZHTA 3PRNA 1E54A 4B61A 4JCHA 3T20A 1HXTA 3AAAB 4GF4A 4D64A 4N58A 2J4UP 2Q0TA 1H6S1 4GCSA 4O3ZA 3O0EA 4FSPA 3AAAA 1PRNA 1G90A 2ZFGA 3AA7B 1P8CA 3HOLA 3D7IA 5DL6A 2Y7SA 3PORA 5AFUL 2Y0LA 2N2LA 3HOEA 1QJ9A 5DL5A 3AA7A 4XNKA 3SY7A 1GFQA 1MM4A 4LSHA 5G26A 3AAEA 2ERVA 4AYDC 1MPFA 4FZLA 4E1TA 5DL8A 8PRNA 2PFXA 4AYEC 1Q9GA 2IJCA 5DL7A 1GU9A 2MHLA 4FSOA 4FT6A 2Y0HA 2PORA 3PQSA 3LK41 2FGRA 1OPFA 4G75A 3LK42 1ME5A 2LHFA 3VE1A 3VZUX 2OYOA 1P4TA 3UU2A 1ZHXA 3KVDD 4FRTA 4LSEA 3WI4A 2ZLDA 3VZWX 4KR8A 2X27X 2JMMA 2XTQA 4N59A 3LK2B 4AKMA 2YPVA 2O4VA 2XE5A 3VZTX 3G7GA 3SY9A 3FYXA 1ZHWA 3POUA 2XE3A 3LK2A 3POQA 4U9CA 3UAQA 3PQUA 2OMFA 4FUVA 1GFPA 2J1NA 4QQ1A 3VY9X 3AA0B 2K4TA 2K0LA 2PRNA 2MNHA 3SZVA 4G9QA 4FOZA 2N2MA 2XG6A 1QJPA 3DA3A 2GMYA 4AKRB 1BH3A 1THQA 3AA0A 4RJWA 2QEUA 4O3WA 2QTKA 4AKRA 2M06A 5DIPA 3C5OA 4GCQA 5GV0A 5DIKA 1ORMA 2F1TA 2CWQA 3JTYA 2PRRA 2KXPB 4G76A 4O4UA 4Z3TA 2XE2A 4AYID 4FZNA 2W81C 3DA4A 2OUWA 1GFOA 4RLCA 4AYNA 2KXPA 4LSFA 3GP6A 4KR4A 3SZDA 4AUIA 3A2SX 4O3XB 4GCPA 3RBHA 2AF7A 3VY8X 3LK3B 4FRXA 2XMXA 3AA1B 4D65A 1MM5A 4FESA 3EMNX 2O4DA 4D5UA 2GE4A 3LK3A 2XE1A 7PRNA 4RLBA 3K19A 4RL9A 5IYUA 3AA1A 4AYMC 3LVYA 2YNKA 3AA6B 3T24A 4KRAA 3NSGA 2KZ7B 3UPGA 6PRNA 2FGQX 3C1LA 3BEYA 4O3YA 3AA6A 3SYBA 3WI5A 3POXA 2KZ7A 1BT9A 1IZNB 1OSMA 2Y2XA 4AFKA 4AZLA 2LFUA 1ZHZA 4O49A 1YS5A 2KDYA 1IZNA 1KNCA 4RJXA 3V8UA 4JFBA 5D5DA 3SYSA 1HXXA 1QJ8A 4LSIA 4E1SA 4BUMX 1ZHYA 3HW9A 5FVNA 5JDPA 1GFMA 3AAEB 4XNLA 4PUXA 5ADXL 2W80C 5T5FA 1LW1A 3QRAA 3TZGA 1HXUA 5EE2A 3HWBA 4C69X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LK3 A;  3AA0 B;  3AAE A;  3AA1 A;  3AA6 B;  4AKR B;  2KZ7 B;  3AA0 A;  5AFU K;  3LK4 1;  3AA6 A;  4AKR A;  3LK4 2;  2KZ7 A;  1IZN B;  2KXP B;  5ADX K;  3AAA B;  1IZN A;  3LK2 B;  2KXP A;  3AAA A;  3AA7 B;  3LK2 A;  5AFU L;  3AAE B;  3LK3 B;  3AA7 A;  3AA1 B;  5ADX L; 
#chains in the Genus database with same CATH topology
 4FZM A;  1PHO A;  3VE2 A;  2IWV A;  4O4X A;  1GFN A;  4GHB A;  3T20 A;  2JQY A;  4FSP A;  3JCU O;  5E79 O;  3AA7 B;  4UB6 O;  3HOL A;  2Y7S A;  2Y0L A;  3PGS A;  3HOE A;  1QJ9 A;  4K3C A;  4LSH A;  4E1T A;  5DL7 A;  1GU9 A;  4FT6 A;  2POR A;  3PQS A;  1S5L O;  3UU2 A;  3KVD D;  3WI4 A;  2JMM A;  4AKM A;  2O4V A;  3VZT X;  3SY9 A;  1ZHW A;  3PQU A;  1GFP A;  3VY9 X;  2PRN A;  2N2M A;  3DA3 A;  4AKR B;  2GMY A;  3AA0 A;  2R89 A;  4RJW A;  2QEU A;  4O3W A;  3BS0 A;  2M06 A;  5DIP A;  3C5O A;  3JTY A;  2PRR A;  2KXP B;  2XE2 A;  2W81 C;  4AYN A;  1T16 A;  3A2S X;  3LK3 B;  2XMX A;  3AA1 B;  4D5U A;  2XE1 A;  7PRN A;  4RL9 A;  3AA6 B;  4KRA A;  3NSG A;  2IWW A;  3UPG A;  2FGQ X;  1BT9 A;  2Y2X A;  4AFK A;  1ZHZ A;  1IZN A;  4RJX A;  3V8U A;  3BRZ A;  1LW1 A;  3TZG A;  4C69 X;  4UB8 O;  1VKE A;  2F1C X;  2ODJ A;  5PRN A;  3T0S A;  5AFU K;  1Q9F A;  4FMS A;  2KC0 A;  3PRN A;  1HXT A;  3AAA B;  4GF4 A;  4D64 A;  2J4U P;  3O0E A;  1PRN A;  3D7I A;  5DL6 A;  3POR A;  3SY7 A;  3PF1 A;  1GFQ A;  3PGU A;  5GTI O;  5G26 A;  5DL8 A;  2PFX A;  2IJC A;  3LK4 1;  2FGR A;  1ME5 A;  2LHF A;  1P4T A;  4C00 A;  3PGR A;  4FRT A;  4N59 A;  3KZI O;  4C4V A;  3A0B O;  2XE3 A;  3LK2 A;  2OMF A;  4FUV A;  2J1N A;  2MNH A;  4G9Q A;  1BH3 A;  3DWN A;  5GV0 A;  2CWQ A;  4KR4 A;  4FRX A;  4CTD A;  5G38 A;  1MM5 A;  3EMN X;  4RLB A;  3K19 A;  4AYM C;  3T24 A;  4K3B A;  2WJR A;  2AXT O;  3POX A;  2KZ7 A;  2LFU A;  4O49 A;  2X9K A;  4JFB A;  1HXX A;  5JDP A;  5FVN A;  4XNL A;  3QRA A;  8PRN A;  3HWB A;  2R4N A;  2M07 A;  2JN8 A;  1E54 A;  4B61 A;  4N58 A;  1H6S 1;  5G3A A;  2ZFG A;  2N2L A;  3AA7 A;  4XNK A;  4AYE C;  1Q9G A;  2MHL A;  3VZU X;  2OYO A;  4IL6 O;  4LSE A;  2X27 X;  5H2F O;  4N75 A;  3POU A;  3POQ A;  4PJ0 O;  3UAQ A;  3A0H O;  4QQ1 A;  3AA0 B;  2K0L A;  4FOZ A;  2XG6 A;  3DWO X;  1QJP A;  2QTK A;  4AKR A;  2R88 A;  2F1T A;  3BRY A;  4AYI D;  4FZN A;  2KXP A;  2R4O A;  4LSF A;  3GP6 A;  4AUI A;  4GCP A;  3RBH A;  3VY8 X;  4FES A;  2O4D A;  3LK3 A;  1T1L A;  5IYU A;  3AA1 A;  5KAF O;  3LVY A;  3C1L A;  4O3Y A;  3AA6 A;  3SYB A;  3WI5 A;  1IZN B;  1OSM A;  1KNC A;  4PR7 A;  4LSI A;  4E1S A;  4BUM X;  1ZHY A;  5G39 A;  1HXU A;  5EE2 A;  2Y0K A;  2XTR A;  4F4B A;  5TIS O;  1BXW A;  2ES9 A;  3QRC A;  2F1V A;  5ADX K;  1ZHT A;  4JCH A;  2Q0T A;  4GCS A;  4O3Z A;  3AAA A;  1G90 A;  1P8C A;  5B5E O;  5AFU L;  5DL5 A;  1MM4 A;  2R8A A;  4AYD C;  3AAE A;  2ERV A;  1MPF A;  4FZL A;  3WU2 O;  4FSO A;  2Y0H A;  1OPF A;  4G75 A;  3LK4 2;  3VE1 A;  2WJQ A;  1ZHX A;  4FQE A;  2ZLD A;  4C4V B;  3VZW X;  4KR8 A;  2XTQ A;  5KAI O;  3LK2 B;  2YPV A;  2XE5 A;  3G7G A;  3FYX A;  4U9C A;  3DZM A;  2K4T A;  5GTH O;  3SZV A;  1THQ A;  2R4L A;  4GCQ A;  5DIK A;  1ORM A;  4G76 A;  4O4U A;  4Z3T A;  3DA4 A;  2OUW A;  1GFO A;  4RLC A;  3SZD A;  4O3X B;  2AF7 A;  3NJT A;  4D65 A;  2GE4 A;  2YNK A;  2KZ7 B;  2R4P A;  6PRN A;  3BEY A;  4AZL A;  1YS5 A;  2KDY A;  4N74 A;  5B66 O;  5D5D A;  3SYS A;  1QJ8 A;  3HW9 A;  2WVP A;  1GFM A;  3AAE B;  4PUX A;  2W80 C;  5T5F A;  5ADX L; 
#chains in the Genus database with same CATH homology
 4FZM A;  2Y0K A;  2XTR A;  4F4B A;  1VKE A;  2ODJ A;  1PHO A;  1BXW A;  5PRN A;  2ES9 A;  3QRC A;  3T0S A;  2F1V A;  3VE2 A;  5AFU K;  2M07 A;  4O4X A;  1Q9F A;  1GFN A;  4FMS A;  2KC0 A;  2JN8 A;  4GHB A;  5ADX K;  1ZHT A;  3PRN A;  1E54 A;  4B61 A;  4JCH A;  3T20 A;  1HXT A;  3AAA B;  4GF4 A;  4D64 A;  4N58 A;  2J4U P;  2Q0T A;  1H6S 1;  4GCS A;  4O3Z A;  3O0E A;  4FSP A;  3AAA A;  1PRN A;  1G90 A;  2ZFG A;  3AA7 B;  1P8C A;  3HOL A;  3D7I A;  5DL6 A;  2Y7S A;  3POR A;  5AFU L;  2Y0L A;  2N2L A;  3HOE A;  1QJ9 A;  5DL5 A;  3AA7 A;  4XNK A;  3SY7 A;  1GFQ A;  1MM4 A;  4LSH A;  5G26 A;  3AAE A;  2ERV A;  4AYD C;  1MPF A;  4FZL A;  4E1T A;  5DL8 A;  8PRN A;  2PFX A;  4AYE C;  1Q9G A;  2IJC A;  5DL7 A;  1GU9 A;  2MHL A;  4FSO A;  4FT6 A;  2Y0H A;  2POR A;  3PQS A;  3LK4 1;  2FGR A;  1OPF A;  4G75 A;  3LK4 2;  1ME5 A;  2LHF A;  3VE1 A;  3VZU X;  2OYO A;  1P4T A;  3UU2 A;  1ZHX A;  3KVD D;  4FRT A;  4LSE A;  3WI4 A;  2ZLD A;  3VZW X;  4KR8 A;  2X27 X;  2JMM A;  2XTQ A;  4N59 A;  3LK2 B;  4AKM A;  2YPV A;  2O4V A;  2XE5 A;  3VZT X;  3G7G A;  3SY9 A;  3FYX A;  1ZHW A;  3POU A;  2XE3 A;  3LK2 A;  3POQ A;  4U9C A;  3UAQ A;  3PQU A;  2OMF A;  4FUV A;  1GFP A;  2J1N A;  4QQ1 A;  3VY9 X;  3AA0 B;  2K4T A;  2K0L A;  2PRN A;  2MNH A;  3SZV A;  4G9Q A;  4FOZ A;  2N2M A;  2XG6 A;  1QJP A;  3DA3 A;  2GMY A;  4AKR B;  1BH3 A;  1THQ A;  3AA0 A;  4RJW A;  2QEU A;  4O3W A;  2QTK A;  4AKR A;  2M06 A;  5DIP A;  3C5O A;  4GCQ A;  5GV0 A;  5DIK A;  1ORM A;  2F1T A;  2CWQ A;  3JTY A;  2PRR A;  2KXP B;  4G76 A;  4O4U A;  4Z3T A;  2XE2 A;  4AYI D;  4FZN A;  2W81 C;  3DA4 A;  2OUW A;  1GFO A;  4RLC A;  4AYN A;  2KXP A;  4LSF A;  3GP6 A;  4KR4 A;  3SZD A;  4AUI A;  3A2S X;  4O3X B;  4GCP A;  3RBH A;  2AF7 A;  3VY8 X;  3LK3 B;  4FRX A;  2XMX A;  3AA1 B;  4D65 A;  1MM5 A;  4FES A;  3EMN X;  2O4D A;  4D5U A;  2GE4 A;  3LK3 A;  2XE1 A;  7PRN A;  4RLB A;  3K19 A;  4RL9 A;  5IYU A;  3AA1 A;  4AYM C;  3LVY A;  2YNK A;  3AA6 B;  3T24 A;  4KRA A;  3NSG A;  2KZ7 B;  3UPG A;  6PRN A;  2FGQ X;  3C1L A;  3BEY A;  4O3Y A;  3AA6 A;  3SYB A;  3WI5 A;  3POX A;  2KZ7 A;  1BT9 A;  1IZN B;  1OSM A;  2Y2X A;  4AFK A;  4AZL A;  2LFU A;  1ZHZ A;  4O49 A;  1YS5 A;  2KDY A;  1IZN A;  1KNC A;  4RJX A;  3V8U A;  4JFB A;  5D5D A;  3SYS A;  1HXX A;  1QJ8 A;  4LSI A;  4E1S A;  4BUM X;  1ZHY A;  3HW9 A;  5FVN A;  5JDP A;  1GFM A;  3AAE B;  4XNL A;  4PUX A;  5ADX L;  2W80 C;  5T5F A;  1LW1 A;  3QRA A;  3TZG A;  1HXU A;  5EE2 A;  3HWB A;  4C69 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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