3LK41

Crystal structure of capz bound to the uncapping motif from cd2ap
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
269
structure length
269
Chain Sequence
VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords F-actin-capping protein subunit alpha-1
publication title Structural characterization of a capping protein interaction motif defines a family of actin filament regulators
doi rcsb
source organism Gallus gallus
total genus 85
structure length 269
sequence length 269
chains with identical sequence 4, 7, A, D, G, J, M, P, S, V, Y
ec nomenclature
pdb deposition date 2010-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
1 PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3lk4101
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3lk4102
3AA6B 3AA0A 3AAEA 5AFUK 5AFUL 2KZ7B 2KXPA 5ADXK 3AA6A 4AKRB 5ADXL 3AA1B 3LK2B 3LK41 1IZNB 3AA7B 2KZ7A 3AAAB 4AKRA 3AA1A 3LK3B 3AA7A 3LK2A 3LK42 1IZNA 3AA0B 3AAAA 3LK3A 3AAEB 2KXPB
chains in the Genus database with same CATH superfamily
1QJ9A 4FRTA 2WJRA 4QQ1A 3POXA 3HWBA 5KAFO 3AA1B 4O3YA 2PFXA 3AA7B 5B66O 5DL5A 2KZ7A 4IL6O 5G38A 3LVYA 2ODJA 2W80C 4GCPA 4AYNA 1OSMA 5DL6A 1HXUA 3UAQA 3WU2O 3PGRA 2W81C 2IJCA 2WJQA 3AA6A 4AKRB 3BRYA 5GTIO 4LSFA 1H6S1 2IWVA 2ZLDA 4D64A 2Y2XA 1MM5A 4O3WA 4FSPA 3POUA 4KRAA 4XNLA 2PRRA 3HW9A 4C4VB 3T24A 3PORA 2R88A 4FOZA 2F1CX 2XG6A 5IYUA 3WI5A 3PGSA 1HXTA 4O4XA 4AKRA 3AA0B 5E79O 3DWOX 5D5DA 1PRNA 4AYDC 4AZLA 2R89A 2X9KA 4K3BA 2FGQX 1MM4A 3UPGA 4N74A 2N2MA 2O4VA 4KR8A 1BH3A 5B5EO 1P4TA 4O3ZA 4U9CA 4D65A 4Z3TA 2KDYA 3PQSA 4AFKA 1Q9FA 2WVPA 3AA0A 3DA4A 1GFOA 4FESA 2J1NA 1E54A 3SYSA 2N2LA 3LK2B 2K4TA 2R4NA 1G90A 2GMYA 3LK42 2MNHA 4RLBA 2KC0A 5EE2A 1ME5A 1PHOA 3AA6B 4O4UA 4FZMA 4FQEA 1QJPA 5ADXK 4N75A 4AUIA 1OPFA 2XE3A 2YPVA 3NSGA 3D7IA 5KAIO 3G7GA 3LK2A 4PR7A 2M07A 2XE2A 4O49A 3KZIO 5G39A 3POQA 5T5FA 2QEUA 2ZFGA 4FZNA 2YNKA 4PJ0O 3VZWX 2J4UP 4GF4A 1ZHXA 5G3AA 3DWNA 3SYBA 2Q0TA 2KXPB 3V8UA 4C00A 2R4PA 4JCHA 3HOEA 4AYID 5AFUL 2R8AA 4G9QA 5ADXL 5JDPA 4N58A 2F1VA 3QRCA 3A2SX 3BS0A 3LK3B 3JCUO 5GV0A 4GCSA 6PRNA 5DIPA 1ZHZA 2KXPA 1LW1A 5GTHO 3DZMA 5DL8A 4B61A 3AAAB 3VE1A 2OMFA 1GFPA 1HXXA 2Y0HA 3SY7A 3WI4A 3LK3A 1ZHTA 3A0HO 3VY8X 2XMXA 3C1LA 1MPFA 4RJWA 3VZTX 2X27X 3VZUX 4AKMA 4F4BA 2PORA 3LK41 3T20A 3KVDD 2LFUA 4E1SA 4RJXA 3HOLA 3SZDA 3BEYA 4FUVA 2OYOA 2AXTO 4N59A 3AAAA 3UU2A 2IWWA 4UB6O 3TZGA 5AFUK 1ORMA 2XTRA 3PF1A 2GE4A 4UB8O 1GFQA 4XNKA 4E1TA 4FSOA 3K19A 8PRNA 2LHFA 4O3XB 4FMSA 4C69X 5G26A 1T16A 3BRZA 1P8CA 1KNCA 2R4LA 1IZNB 3FYXA 4RL9A 4LSEA 5H2FO 2JQYA 4KR4A 2R4OA 4AYMC 4CTDA 3PQUA 3AAEA 3RBHA 4K3CA 4FZLA 4PUXA 3VY9X 4D5UA 3O0EA 2MHLA 3PGUA 3JTYA 3AA1A 3AA7A 1IZNA 3A0BO 4FRXA 1YS5A 4LSHA 2ES9A 4G76A 3C5OA 1VKEA 2XTQA 3EMNX 4GHBA 5DIKA 2XE1A 1BT9A 2Y0KA 1GFMA 4G75A 4GCQA 3SZVA 1THQA 5PRNA 5FVNA 5DL7A 2XE5A 4C4VA 2CWQA 3QRAA 4RLCA 4FT6A 1T1LA 3T0SA 2FGRA 4LSIA 2F1TA 3PRNA 1Q9GA 2ERVA 2JN8A 2JMMA 2O4DA 1ZHYA 2Y7SA 2PRNA 3SY9A 1ZHWA 5TISO 1S5LO 1BXWA 1GFNA 2KZ7B 1QJ8A 2AF7A 3VE2A 2K0LA 1GU9A 3GP6A 4JFBA 7PRNA 2QTKA 2OUWA 4BUMX 3DA3A 2Y0LA 3NJTA 2M06A 3AAEB 4AYEC
chains in the Genus database with same CATH topology
1QJ9A 4FRTA 3AA0A 4QQ1A 3DA4A 3AAEA 3POXA 1GFOA 3RBHA 4FESA 1ZHZA 2KXPA 1E54A 1LW1A 2J1NA 4FZLA 3SYSA 3HWBA 2N2LA 3AA1B 3LK2B 4O3YA 2PFXA 4PUXA 5DL8A 3AA7B 3VY9X 2K4TA 5DL5A 4D5UA 2KZ7A 3O0EA 4B61A 2MHLA 1G90A 3JTYA 3AAAB 3VE1A 3AA1A 2GMYA 3AA7A 3LK42 3LVYA 2OMFA 1IZNA 1GFPA 2ODJA 4FRXA 2MNHA 1YS5A 1HXXA 2W80C 2Y0HA 3SY7A 3WI4A 4GCPA 4LSHA 4RLBA 2KC0A 3LK3A 1ZHTA 5EE2A 4AYNA 2ES9A 1OSMA 1ME5A 1PHOA 5DL6A 1HXUA 2XMXA 3VY8X 3UAQA 3AA6B 2W81C 3C1LA 4O4UA 2IJCA 4G76A 3C5OA 4FZMA 1VKEA 1MPFA 2XTQA 4RJWA 1QJPA 5ADXK 4AUIA 3VZTX 3EMNX 1OPFA 3AA6A 2X27X 3VZUX 4AKRB 2XE3A 4AKMA 4F4BA 2PORA 3LK41 2YPVA 3NSGA 4GHBA 3T20A 5DIKA 3D7IA 2XE1A 2LFUA 3KVDD 1BT9A 4LSFA 4E1SA 2Y0KA 4RJXA 1H6S1 3HOLA 3SZDA 2ZLDA 1GFMA 3G7GA 4D64A 3BEYA 3LK2A 4G75A 4GCQA 4FUVA 3SZVA 2Y2XA 1THQA 2OYOA 1MM5A 4O3WA 4FSPA 4N59A 5PRNA 3POUA 2M07A 4KRAA 5FVNA 3AAAA 2XE2A 4XNLA 3UU2A 2PRRA 5DL7A 3HW9A 4O49A 2XE5A 3T24A 3PORA 3POQA 3TZGA 5AFUK 4FOZA 2XG6A 5T5FA 1ORMA 2QEUA 2XTRA 2ZFGA 4FZNA 5IYUA 2GE4A 3WI5A 2CWQA 2YNKA 3QRAA 4RLCA 4FT6A 1GFQA 4XNKA 1HXTA 4E1TA 4O4XA 3T0SA 4AKRA 2FGRA 3VZWX 4FSOA 2J4UP 4GF4A 1ZHXA 4LSIA 3K19A 2F1TA 3AA0B 3PRNA 8PRNA 1Q9GA 2LHFA 4O3XB 4FMSA 3SYBA 4C69X 2Q0TA 2ERVA 2JN8A 2JMMA 2O4DA 2KXPB 5D5DA 1PRNA 1ZHYA 3V8UA 4AYDC 2Y7SA 2PRNA 5G26A 4AZLA 3SY9A 4JCHA 3HOEA 4AYID 1ZHWA 1P8CA 1BXWA 1GFNA 2KZ7B 5AFUL 1QJ8A 2AF7A 2FGQX 3VE2A 2K0LA 1KNCA 1GU9A 4G9QA 1MM4A 5ADXL 3GP6A 5JDPA 3UPGA 1IZNB 4N58A 4JFBA 7PRNA 2N2MA 2F1VA 3QRCA 2O4VA 3A2SX 1BH3A 2QTKA 3FYXA 4KR8A 4RL9A 3LK3B 1P4TA 2OUWA 4O3ZA 4LSEA 4U9CA 4BUMX 4D65A 4Z3TA 3DA3A 2KDYA 3PQSA 4AFKA 2Y0LA 1Q9FA 4KR4A 2M06A 4GCSA 3AAEB 5GV0A 4AYEC 4AYMC 6PRNA 5DIPA 3PQUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AA6 B;  3AA0 A;  3AAE A;  5AFU K;  5AFU L;  2KZ7 B;  2KXP A;  5ADX K;  3AA6 A;  4AKR B;  5ADX L;  3AA1 B;  3LK2 B;  3LK4 1;  1IZN B;  3AA7 B;  2KZ7 A;  3AAA B;  4AKR A;  3AA1 A;  3LK3 B;  3AA7 A;  3LK2 A;  3LK4 2;  1IZN A;  3AA0 B;  3AAA A;  3LK3 A;  3AAE B;  2KXP B; 
#chains in the Genus database with same CATH topology
 1QJ9 A;  4FRT A;  2WJR A;  4QQ1 A;  3POX A;  3HWB A;  5KAF O;  3AA1 B;  4O3Y A;  2PFX A;  3AA7 B;  5B66 O;  5DL5 A;  2KZ7 A;  4IL6 O;  5G38 A;  3LVY A;  2ODJ A;  2W80 C;  4GCP A;  4AYN A;  1OSM A;  5DL6 A;  1HXU A;  3UAQ A;  3WU2 O;  3PGR A;  2W81 C;  2IJC A;  2WJQ A;  3AA6 A;  4AKR B;  3BRY A;  5GTI O;  4LSF A;  1H6S 1;  2IWV A;  2ZLD A;  4D64 A;  2Y2X A;  1MM5 A;  4O3W A;  4FSP A;  3POU A;  4KRA A;  4XNL A;  2PRR A;  3HW9 A;  4C4V B;  3T24 A;  3POR A;  2R88 A;  4FOZ A;  2F1C X;  2XG6 A;  5IYU A;  3WI5 A;  3PGS A;  1HXT A;  4O4X A;  4AKR A;  3AA0 B;  5E79 O;  3DWO X;  5D5D A;  1PRN A;  4AYD C;  4AZL A;  2R89 A;  2X9K A;  4K3B A;  2FGQ X;  1MM4 A;  3UPG A;  4N74 A;  2N2M A;  2O4V A;  4KR8 A;  1BH3 A;  5B5E O;  1P4T A;  4O3Z A;  4U9C A;  4D65 A;  4Z3T A;  2KDY A;  3PQS A;  4AFK A;  1Q9F A;  2WVP A;  3AA0 A;  3DA4 A;  1GFO A;  4FES A;  2J1N A;  1E54 A;  3SYS A;  2N2L A;  3LK2 B;  2K4T A;  2R4N A;  1G90 A;  2GMY A;  3LK4 2;  2MNH A;  4RLB A;  2KC0 A;  5EE2 A;  1ME5 A;  1PHO A;  3AA6 B;  4O4U A;  4FZM A;  4FQE A;  1QJP A;  5ADX K;  4N75 A;  4AUI A;  1OPF A;  2XE3 A;  2YPV A;  3NSG A;  3D7I A;  5KAI O;  3G7G A;  3LK2 A;  4PR7 A;  2M07 A;  2XE2 A;  4O49 A;  3KZI O;  5G39 A;  3POQ A;  5T5F A;  2QEU A;  2ZFG A;  4FZN A;  2YNK A;  4PJ0 O;  3VZW X;  2J4U P;  4GF4 A;  1ZHX A;  5G3A A;  3DWN A;  3SYB A;  2Q0T A;  2KXP B;  3V8U A;  4C00 A;  2R4P A;  4JCH A;  3HOE A;  4AYI D;  5AFU L;  2R8A A;  4G9Q A;  5ADX L;  5JDP A;  4N58 A;  2F1V A;  3QRC A;  3A2S X;  3BS0 A;  3LK3 B;  3JCU O;  5GV0 A;  4GCS A;  6PRN A;  5DIP A;  1ZHZ A;  2KXP A;  1LW1 A;  5GTH O;  3DZM A;  5DL8 A;  4B61 A;  3AAA B;  3VE1 A;  2OMF A;  1GFP A;  1HXX A;  2Y0H A;  3SY7 A;  3WI4 A;  3LK3 A;  1ZHT A;  3A0H O;  3VY8 X;  2XMX A;  3C1L A;  1MPF A;  4RJW A;  3VZT X;  2X27 X;  3VZU X;  4AKM A;  4F4B A;  2POR A;  3LK4 1;  3T20 A;  3KVD D;  2LFU A;  4E1S A;  4RJX A;  3HOL A;  3SZD A;  3BEY A;  4FUV A;  2OYO A;  2AXT O;  4N59 A;  3AAA A;  3UU2 A;  2IWW A;  4UB6 O;  3TZG A;  5AFU K;  1ORM A;  2XTR A;  3PF1 A;  2GE4 A;  4UB8 O;  1GFQ A;  4XNK A;  4E1T A;  4FSO A;  3K19 A;  8PRN A;  2LHF A;  4O3X B;  4FMS A;  4C69 X;  5G26 A;  1T16 A;  3BRZ A;  1P8C A;  1KNC A;  2R4L A;  1IZN B;  3FYX A;  4RL9 A;  4LSE A;  5H2F O;  2JQY A;  4KR4 A;  2R4O A;  4AYM C;  4CTD A;  3PQU A;  3AAE A;  3RBH A;  4K3C A;  4FZL A;  4PUX A;  3VY9 X;  4D5U A;  3O0E A;  2MHL A;  3PGU A;  3JTY A;  3AA1 A;  3AA7 A;  1IZN A;  3A0B O;  4FRX A;  1YS5 A;  4LSH A;  2ES9 A;  4G76 A;  3C5O A;  1VKE A;  2XTQ A;  3EMN X;  4GHB A;  5DIK A;  2XE1 A;  1BT9 A;  2Y0K A;  1GFM A;  4G75 A;  4GCQ A;  3SZV A;  1THQ A;  5PRN A;  5FVN A;  5DL7 A;  2XE5 A;  4C4V A;  2CWQ A;  3QRA A;  4RLC A;  4FT6 A;  1T1L A;  3T0S A;  2FGR A;  4LSI A;  2F1T A;  3PRN A;  1Q9G A;  2ERV A;  2JN8 A;  2JMM A;  2O4D A;  1ZHY A;  2Y7S A;  2PRN A;  3SY9 A;  1ZHW A;  5TIS O;  1S5L O;  1BXW A;  1GFN A;  2KZ7 B;  1QJ8 A;  2AF7 A;  3VE2 A;  2K0L A;  1GU9 A;  3GP6 A;  4JFB A;  7PRN A;  2QTK A;  2OUW A;  4BUM X;  3DA3 A;  2Y0L A;  3NJT A;  2M06 A;  3AAE B;  4AYE C; 
#chains in the Genus database with same CATH homology
 1QJ9 A;  4FRT A;  3AA0 A;  4QQ1 A;  3DA4 A;  3AAE A;  3POX A;  1GFO A;  3RBH A;  4FES A;  1ZHZ A;  2KXP A;  1E54 A;  1LW1 A;  2J1N A;  4FZL A;  3SYS A;  3HWB A;  2N2L A;  3AA1 B;  3LK2 B;  4O3Y A;  2PFX A;  4PUX A;  5DL8 A;  3AA7 B;  3VY9 X;  2K4T A;  5DL5 A;  4D5U A;  2KZ7 A;  3O0E A;  4B61 A;  2MHL A;  1G90 A;  3JTY A;  3AAA B;  3VE1 A;  3AA1 A;  2GMY A;  3AA7 A;  3LK4 2;  3LVY A;  2OMF A;  1IZN A;  1GFP A;  2ODJ A;  4FRX A;  2MNH A;  1YS5 A;  1HXX A;  2W80 C;  2Y0H A;  3SY7 A;  3WI4 A;  4GCP A;  4LSH A;  4RLB A;  2KC0 A;  3LK3 A;  1ZHT A;  5EE2 A;  4AYN A;  2ES9 A;  1OSM A;  1ME5 A;  1PHO A;  5DL6 A;  1HXU A;  2XMX A;  3VY8 X;  3UAQ A;  3AA6 B;  2W81 C;  3C1L A;  4O4U A;  2IJC A;  4G76 A;  3C5O A;  4FZM A;  1VKE A;  1MPF A;  2XTQ A;  4RJW A;  1QJP A;  5ADX K;  4AUI A;  3VZT X;  3EMN X;  1OPF A;  3AA6 A;  2X27 X;  3VZU X;  4AKR B;  2XE3 A;  4AKM A;  4F4B A;  2POR A;  3LK4 1;  2YPV A;  3NSG A;  4GHB A;  3T20 A;  5DIK A;  3D7I A;  2XE1 A;  2LFU A;  3KVD D;  1BT9 A;  4LSF A;  4E1S A;  2Y0K A;  4RJX A;  1H6S 1;  3HOL A;  3SZD A;  2ZLD A;  1GFM A;  3G7G A;  4D64 A;  3BEY A;  3LK2 A;  4G75 A;  4GCQ A;  4FUV A;  3SZV A;  2Y2X A;  1THQ A;  2OYO A;  1MM5 A;  4O3W A;  4FSP A;  4N59 A;  5PRN A;  3POU A;  2M07 A;  4KRA A;  5FVN A;  3AAA A;  2XE2 A;  4XNL A;  3UU2 A;  2PRR A;  5DL7 A;  3HW9 A;  4O49 A;  2XE5 A;  3T24 A;  3POR A;  3POQ A;  3TZG A;  5AFU K;  4FOZ A;  2XG6 A;  5T5F A;  1ORM A;  2QEU A;  2XTR A;  2ZFG A;  4FZN A;  5IYU A;  2GE4 A;  3WI5 A;  2CWQ A;  2YNK A;  3QRA A;  4RLC A;  4FT6 A;  1GFQ A;  4XNK A;  1HXT A;  4E1T A;  4O4X A;  3T0S A;  4AKR A;  2FGR A;  3VZW X;  4FSO A;  2J4U P;  4GF4 A;  1ZHX A;  4LSI A;  3K19 A;  2F1T A;  3AA0 B;  3PRN A;  8PRN A;  1Q9G A;  2LHF A;  4O3X B;  4FMS A;  3SYB A;  4C69 X;  2Q0T A;  2ERV A;  2JN8 A;  2JMM A;  2O4D A;  2KXP B;  5D5D A;  1PRN A;  1ZHY A;  3V8U A;  4AYD C;  2Y7S A;  2PRN A;  5G26 A;  4AZL A;  3SY9 A;  4JCH A;  3HOE A;  4AYI D;  1ZHW A;  1P8C A;  1BXW A;  1GFN A;  2KZ7 B;  5AFU L;  1QJ8 A;  2AF7 A;  2FGQ X;  3VE2 A;  2K0L A;  1KNC A;  1GU9 A;  4G9Q A;  1MM4 A;  5ADX L;  3GP6 A;  5JDP A;  3UPG A;  1IZN B;  4N58 A;  4JFB A;  7PRN A;  2N2M A;  2F1V A;  3QRC A;  2O4V A;  3A2S X;  1BH3 A;  2QTK A;  3FYX A;  4KR8 A;  4RL9 A;  3LK3 B;  1P4T A;  2OUW A;  4O3Z A;  4LSE A;  4U9C A;  4BUM X;  4D65 A;  4Z3T A;  3DA3 A;  2KDY A;  3PQS A;  4AFK A;  2Y0L A;  1Q9F A;  4KR4 A;  2M06 A;  4GCS A;  3AAE B;  5GV0 A;  4AYE C;  4AYM C;  6PRN A;  5DIP A;  3PQU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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