1I5KA

Structure and binding determinants of the recombinant kringle-2 domain of human plasminogen to an internal peptide from a group a streptococcal surface protein
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
79
structure length
79
Chain Sequence
ECMHGSGENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNKNLKKNYCRNPDRDLRPWCFTTDPNKRWEYCDIPRC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and binding determinants of the recombinant kringle-2 domain of human plasminogen to an internal peptide from a group A Streptococcal surface protein.
pubmed doi rcsb
molecule tags Blood clotting
source organism Homo sapiens
molecule keywords PLASMINOGEN
total genus 19
structure length 79
sequence length 79
chains with identical sequence B
ec nomenclature ec 3.4.21.7: Plasmin.
pdb deposition date 2001-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00051 Kringle Kringle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.20.10 Mainly Beta Beta Barrel Plasminogen Kringle 4 Plasminogen Kringle 4 1i5kA00
4BVVA 1PMKA 1KRNA 1TPKA 5CT1A 4KIVA 1KDUA 1B2IA 1HPKA 2DOIA 1CEBA 5CSQA 4A5TS 2KNFA 1GMNA 1JFNA 4BVDA 2SPTA 3KIVA 4BV5A 3MKPA 3LAQA 3BT2A 4CIKA 1PK2A 4BV7A 5HPGA 1PKRA 2I9BA 3SP8A 5COEA 1GP9A 4D3CA 1BHTA 1HPJA 2PF2A 3E6PL 2FEBA 4O03A 3NXPA 2K51A 1PMLA 5CT3A 3K65A 2KJ4A 3BT1A 2PF1A 2I9AA 4DURA 1KIVA 1NL1A 1I71A 2HPPP 2L0SA 1PK4A 1CEAA 1URKA 1NK1A 2K4RA 3U73A 1GMOA 2DOHX 1I5KA 2QJ2A 1KI0A 5CS3A 4HZHA 4BVWA 2FD6A 5CS5A 5CS9A 4BVCA 3HN4A 2PK4A 2HPQP 1NL2A 5CS1A 2QJ4A 4IUAA 5CP9A 1A0HA 4NZQA 5CT2A
chains in the Genus database with same CATH superfamily
4BVVA 1PMKA 1KRNA 1TPKA 5CT1A 4KIVA 1KDUA 1B2IA 1HPKA 2DOIA 1CEBA 5CSQA 4A5TS 2KNFA 1GMNA 1JFNA 4BVDA 2SPTA 3KIVA 4BV5A 3MKPA 3LAQA 3BT2A 4CIKA 1PK2A 4BV7A 5HPGA 1PKRA 2I9BA 3SP8A 5COEA 1GP9A 4D3CA 1BHTA 1HPJA 2PF2A 3E6PL 2FEBA 4O03A 3NXPA 2K51A 1PMLA 5CT3A 3K65A 2KJ4A 3BT1A 2PF1A 2I9AA 4DURA 1KIVA 1NL1A 1I71A 2HPPP 2L0SA 1PK4A 1CEAA 1URKA 1NK1A 2K4RA 3U73A 1GMOA 2DOHX 1I5KA 2QJ2A 1KI0A 5CS3A 4HZHA 4BVWA 2FD6A 5CS5A 5CS9A 4BVCA 3HN4A 2PK4A 2HPQP 1NL2A 5CS1A 2QJ4A 4IUAA 5CP9A 1A0HA 4NZQA 5CT2A
chains in the Genus database with same CATH topology
4BVVA 1PMKA 1KRNA 1TPKA 5CT1A 4KIVA 1KDUA 1B2IA 1HPKA 2DOIA 1CEBA 5CSQA 4A5TS 2KNFA 1GMNA 1JFNA 4BVDA 2SPTA 3KIVA 4BV5A 3MKPA 3LAQA 3BT2A 4CIKA 1PK2A 4BV7A 5HPGA 1PKRA 2I9BA 3SP8A 5COEA 1GP9A 4D3CA 1BHTA 1HPJA 2PF2A 3E6PL 2FEBA 4O03A 3NXPA 2K51A 1PMLA 5CT3A 3K65A 2KJ4A 3BT1A 2PF1A 2I9AA 4DURA 1KIVA 1NL1A 1I71A 2HPPP 2L0SA 1PK4A 1CEAA 1URKA 1NK1A 2K4RA 3U73A 1GMOA 2DOHX 1I5KA 2QJ2A 1KI0A 5CS3A 4HZHA 4BVWA 2FD6A 5CS5A 5CS9A 4BVCA 3HN4A 2PK4A 2HPQP 1NL2A 5CS1A 2QJ4A 4IUAA 5CP9A 1A0HA 4NZQA 5CT2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BVV A;  1PMK A;  1KRN A;  1TPK A;  5CT1 A;  4KIV A;  1KDU A;  1B2I A;  1HPK A;  2DOI A;  1CEB A;  5CSQ A;  4A5T S;  2KNF A;  1GMN A;  1JFN A;  4BVD A;  2SPT A;  3KIV A;  4BV5 A;  3MKP A;  3LAQ A;  3BT2 A;  4CIK A;  1PK2 A;  4BV7 A;  5HPG A;  1PKR A;  2I9B A;  3SP8 A;  5COE A;  1GP9 A;  4D3C A;  1BHT A;  1HPJ A;  2PF2 A;  3E6P L;  2FEB A;  4O03 A;  3NXP A;  2K51 A;  1PML A;  5CT3 A;  3K65 A;  2KJ4 A;  3BT1 A;  2PF1 A;  2I9A A;  4DUR A;  1KIV A;  1NL1 A;  1I71 A;  2HPP P;  2L0S A;  1PK4 A;  1CEA A;  1URK A;  1NK1 A;  2K4R A;  3U73 A;  1GMO A;  2DOH X;  1I5K A;  2QJ2 A;  1KI0 A;  5CS3 A;  4HZH A;  4BVW A;  2FD6 A;  5CS5 A;  5CS9 A;  4BVC A;  3HN4 A;  2PK4 A;  2HPQ P;  1NL2 A;  5CS1 A;  2QJ4 A;  4IUA A;  5CP9 A;  1A0H A;  4NZQ A;  5CT2 A; 
#chains in the Genus database with same CATH topology
 4BVV A;  1PMK A;  1KRN A;  1TPK A;  5CT1 A;  4KIV A;  1KDU A;  1B2I A;  1HPK A;  2DOI A;  1CEB A;  5CSQ A;  4A5T S;  2KNF A;  1GMN A;  1JFN A;  4BVD A;  2SPT A;  3KIV A;  4BV5 A;  3MKP A;  3LAQ A;  3BT2 A;  4CIK A;  1PK2 A;  4BV7 A;  5HPG A;  1PKR A;  2I9B A;  3SP8 A;  5COE A;  1GP9 A;  4D3C A;  1BHT A;  1HPJ A;  2PF2 A;  3E6P L;  2FEB A;  4O03 A;  3NXP A;  2K51 A;  1PML A;  5CT3 A;  3K65 A;  2KJ4 A;  3BT1 A;  2PF1 A;  2I9A A;  4DUR A;  1KIV A;  1NL1 A;  1I71 A;  2HPP P;  2L0S A;  1PK4 A;  1CEA A;  1URK A;  1NK1 A;  2K4R A;  3U73 A;  1GMO A;  2DOH X;  1I5K A;  2QJ2 A;  1KI0 A;  5CS3 A;  4HZH A;  4BVW A;  2FD6 A;  5CS5 A;  5CS9 A;  4BVC A;  3HN4 A;  2PK4 A;  2HPQ P;  1NL2 A;  5CS1 A;  2QJ4 A;  4IUA A;  5CP9 A;  1A0H A;  4NZQ A;  5CT2 A; 
#chains in the Genus database with same CATH homology
 4BVV A;  1PMK A;  1KRN A;  1TPK A;  5CT1 A;  4KIV A;  1KDU A;  1B2I A;  1HPK A;  2DOI A;  1CEB A;  5CSQ A;  4A5T S;  2KNF A;  1GMN A;  1JFN A;  4BVD A;  2SPT A;  3KIV A;  4BV5 A;  3MKP A;  3LAQ A;  3BT2 A;  4CIK A;  1PK2 A;  4BV7 A;  5HPG A;  1PKR A;  2I9B A;  3SP8 A;  5COE A;  1GP9 A;  4D3C A;  1BHT A;  1HPJ A;  2PF2 A;  3E6P L;  2FEB A;  4O03 A;  3NXP A;  2K51 A;  1PML A;  5CT3 A;  3K65 A;  2KJ4 A;  3BT1 A;  2PF1 A;  2I9A A;  4DUR A;  1KIV A;  1NL1 A;  1I71 A;  2HPP P;  2L0S A;  1PK4 A;  1CEA A;  1URK A;  1NK1 A;  2K4R A;  3U73 A;  1GMO A;  2DOH X;  1I5K A;  2QJ2 A;  1KI0 A;  5CS3 A;  4HZH A;  4BVW A;  2FD6 A;  5CS5 A;  5CS9 A;  4BVC A;  3HN4 A;  2PK4 A;  2HPQ P;  1NL2 A;  5CS1 A;  2QJ4 A;  4IUA A;  5CP9 A;  1A0H A;  4NZQ A;  5CT2 A; 
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