The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
137
|
sequence length |
442
|
structure length |
442
|
Chain Sequence |
GLTGLEIYKHLPKKNCKECGQPTCLAFAMQIAAGKAGLDACPYVSDEAKELLESASAPPVALIKVGKGEKVLEIGHETVLFRHDKRFEHPCGLAILVEDTLSEGEIKERVEKINKLVFDRVGQMHSVNLVALKGSSQDAATFAKAVATAREVTDLPFILIGTPEQLAAALETEGANNPLLYAATADNYEQMVELAKKYNVPLTVSAKGLDALAELVQKITALGYKNLILDPQPENISEGLFYQTQIRRLAIKKLFRPFGYPTIAFALDENPYQAVMEASVYIAKYAGIIVLNTVEPADILPLITLRLNIYTDPQKPIAVEPKVYEILNPGPDAPVFITTNFSLTYFCVAGDVEGARIPAYILPVDTDGTSVLTAWAAGKFTPEKIAQFLKESGIAEKVNHRKAILPGGVAVLSGKLQELSGWEILVGPRESSGINSFIKQRW
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
ATP-Induced Electron Transfer by Redox-Selective Partner Recognition
pubmed doi rcsb |
molecule keywords |
CARBON MONOXIDE DEHYDROGENASE CORRINOID/IRON-SULFUR PROTEIN,
|
molecule tags |
Oxidoreductase/metal binding protein
|
source organism |
Carboxydothermus hydrogenoformans
|
total genus |
137
|
structure length |
442
|
sequence length |
442
|
chains with identical sequence |
C, E, G
|
ec nomenclature | |
pdb deposition date | 2013-08-13 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF03599 | CdhD | CO dehydrogenase/acetyl-CoA synthase delta subunit |
A | PF04060 | FeS | Putative Fe-S cluster |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Alpha | Orthogonal Bundle | 3-methyladenine DNA Glycosylase II; Chain A, domain 3 | 3-methyladenine DNA Glycosylase II; Chain A, domain 3 | ||
Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Dihydropteroate synthase-like | ||
Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Rossmann fold |