1KNCA

Structure of ahpd from mycobacterium tuberculosis, a novel enzyme with thioredoxin-like activity.
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
174
structure length
174
Chain Sequence
SIEKLKAALPEYAKDIKLNLSSITRSSVLDQEQLWGTLLASAAATRNPQVLADIGAEATDHLSAAARHAALGAAAIMGMNNVFYRGRGFLEGRYDDLRPGLRMNIIANPGIPKANFELWSFAVSAINGCSHCLVAHEHTLRTVGVDREAIFEALKAAAIVSGVAQALATIEALS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
source organism Mycobacterium tuberculosis
publication title Metabolic enzymes of mycobacteria linked to antioxidant defense by a thioredoxin-like protein.
pubmed doi rcsb
molecule keywords AhpD protein
total genus 72
structure length 174
sequence length 174
chains with identical sequence B, C
ec nomenclature ec 1.11.1.15: Peroxiredoxin.
pdb deposition date 2001-12-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 1kncA00
3LVYA 3BEYA 2PFXA 5DIPA 1ME5A 2Q0TA 5DIKA 2GMYA 2PRRA 3C1LA 2AF7A 3D7IA 2QEUA 1GU9A 2CWQA 2IJCA 2OYOA 1VKEA 1P8CA 1KNCA 2OUWA 2O4DA 4G9QA 1LW1A
chains in the Genus database with same CATH superfamily
3LVYA 3BEYA 2PFXA 2KZ7A 5DIPA 1ME5A 3AAEA 2Q0TA 3AA1A 1IZNA 5DIKA 2GMYA 2PRRA 3C1LA 2AF7A 3D7IA 3LK3A 2QEUA 1GU9A 2CWQA 3AAAA 3AA0A 2KXPA 2IJCA 2OYOA 3LK41 1VKEA 5AFUK 2ES9A 1P8CA 3LK2A 4AKRA 1KNCA 2OUWA 3AA6A 3AA7A 2O4DA 2JN8A 4G9QA 1LW1A 5ADXK
chains in the Genus database with same CATH topology
3LVYA 3BEYA 2PFXA 2KZ7A 5DIPA 1ME5A 3AAEA 2Q0TA 3AA1A 1IZNA 5DIKA 2GMYA 2PRRA 3C1LA 2AF7A 3D7IA 3LK3A 2QEUA 1GU9A 2CWQA 3AAAA 3AA0A 2KXPA 2IJCA 2OYOA 3LK41 1VKEA 5AFUK 2ES9A 1P8CA 3LK2A 4AKRA 1KNCA 2OUWA 3AA6A 3AA7A 2O4DA 2JN8A 4G9QA 1LW1A 5ADXK
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LVY A;  3BEY A;  2PFX A;  5DIP A;  1ME5 A;  2Q0T A;  5DIK A;  2GMY A;  2PRR A;  3C1L A;  2AF7 A;  3D7I A;  2QEU A;  1GU9 A;  2CWQ A;  2IJC A;  2OYO A;  1VKE A;  1P8C A;  1KNC A;  2OUW A;  2O4D A;  4G9Q A;  1LW1 A; 
#chains in the Genus database with same CATH topology
 3LVY A;  3BEY A;  2PFX A;  2KZ7 A;  5DIP A;  1ME5 A;  3AAE A;  2Q0T A;  3AA1 A;  1IZN A;  5DIK A;  2GMY A;  2PRR A;  3C1L A;  2AF7 A;  3D7I A;  3LK3 A;  2QEU A;  1GU9 A;  2CWQ A;  3AAA A;  3AA0 A;  2KXP A;  2IJC A;  2OYO A;  3LK4 1;  1VKE A;  5AFU K;  2ES9 A;  1P8C A;  3LK2 A;  4AKR A;  1KNC A;  2OUW A;  3AA6 A;  3AA7 A;  2O4D A;  2JN8 A;  4G9Q A;  1LW1 A;  5ADX K; 
#chains in the Genus database with same CATH homology
 3LVY A;  3BEY A;  2PFX A;  2KZ7 A;  5DIP A;  1ME5 A;  3AAE A;  2Q0T A;  3AA1 A;  1IZN A;  5DIK A;  2GMY A;  2PRR A;  3C1L A;  2AF7 A;  3D7I A;  3LK3 A;  2QEU A;  1GU9 A;  2CWQ A;  3AAA A;  3AA0 A;  2KXP A;  2IJC A;  2OYO A;  3LK4 1;  1VKE A;  5AFU K;  2ES9 A;  1P8C A;  3LK2 A;  4AKR A;  1KNC A;  2OUW A;  3AA6 A;  3AA7 A;  2O4D A;  2JN8 A;  4G9Q A;  1LW1 A;  5ADX K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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