1M1KX

Co-crystal structure of azithromycin bound to the 50s ribosomal subunit of haloarcula marismortui
Total Genus 47

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-6)TII2 (28-31)TII1 (10-13)AH1 (15-24)AH2 (39-48)S2 (31-35)S4 (115-117)S3 (52-55)AH3 (59-69)AH6 (143-153)TVIII1 (72-75)AH4 (81-86)AH5 (93-102)TII3 (121-124)3H2 (132-134)TIV2 (127-130)TI1 (48-51)S5 (139-140)3H1 (108-110)Updating...
connected with : NaN
publication title The structures of four macrolide antibiotics bound to the large ribosomal subunit.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 23S RRNA
total genus 47
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2002-06-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 1m1kX02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 1m1kX01
5GAGa 3I55W 5JVGW 4IOCW 1VQ5W 1YITW 1KC8X 3PIPW 4IOAW 3CC4W 3G6EW 1QVFV 2QA4W 3CMEW 1VQ4W 3CCUW 1S72W 1K73X 3PIOW 1YJ9W 2QEXW 1Q82X 1VQ8W 1YHQW 4U67W 4UY8Z 3CMAW 1N8RX 3CCRW 3CCMW 2ZJQW 4WFAW 1VQMW 1KD1X 5DM7W 2ZJPW 3CC7W 1BXYA 3CPWV 5GAHa 3I56W 1Q86X 3G4SW 3CCSW 5GAEa 2OTJW 1VQ6W 1KQSV 3DLLW 1VQLW 1Q7YX 1NJIX 5GADa 1VQOW 2ZJRW 4WF9W 5DM6W 3CF5W 1YJWW 4WFNW 1W2BV 1M1KX 1YJNW 1K8AX 1VQPW 1YI2W 1JJ2V 3CD6W 3CXCV 3CCJW 4WCEW 3CCEW 3CCLW 3CCVW 1VQ9W 1M90X 1VQKW 5HL7W 1Q81X 3G71W 1VQNW 5JVHW 1K9MX 4WFBW 4IO9W 1VQ7W 1YIJW 1QVGV 3CCQW 3OW2V 2OTLW 3CC2W 3J7ZZ
chains in the Genus database with same CATH superfamily
5GAGa 4BL3A 3I55W 5JVGW 4IOCW 2WA9A 3W7SA 1VQ5W 1YITW 1KC8X 3PIPW 4IOAW 3CC4W 3GW1A 3O1FB 3W7TA 3G6EW 1QVFV 5GW7A 5M1AA 2QA4W 3CMEW 1VQ4W 3DNJA 3CCUW 1S72W 3G1BA 1K73X 4YKAA 1MWUA 3PIOW 1YJ9W 1LZWA 2QEXW 1Q82X 1VQ8W 1RQUA 3D3IA 3W7XA 1YHQW 4U67W 4UY8Z 1DD4A 3CMAW 4CJNA 1N8RX 1RQVA 3CCRW 3CCMW 5M19A 3O2OA 2ZJQW 4WFAW 1VQMW 1MBUC 1R6QC 1KD1X 3O2BA 2WA8A 5DM7W 2ZJPW 1RQSA 3CC7W 1BXYA 3CPWV 1MWSA 5GAHa 3I56W 4BL2A 1Q86X 1CTFA 3G4SW 3CCSW 3W7WA 3W7UA 5GAEa 3ZG5A 2OTJW 1MWTA 5CA3A 4YJXA 1VQ6W 1MBXC 3G19A 4YJMA 1KQSV 3DLLW 1VQLW 4CPKA 1Q7YX 1NJIX 5GADa 1VQOW 3GQ0A 2ZJRW 4WF9W 3O1FA 1DD3A 2W9RA 4C1NA 5DM6W 1YJWW 4WFNW 3CF5W 1W2BV 1M1KX 1YJNW 1K8AX 1VQQA 3O2HA 1VQPW 1YI2W 1JJ2V 3CD6W 3CXCV 3CCJW 3GQ1A 4WCEW 3ZFZA 3CCEW 1MG9A 3CCLW 3CCVW 1VQ9W 1M90X 1VQKW 5M18A 1R6OC 4DKIA 1Q81X 5HL7W 3G71W 1MBVB 1VQNW 5JVHW 1K9MX 4WFBW 4IO9W 1VQ7W 3G3PA 1YIJW 1MWRA 1QVGV 3CCQW 3OW2V 2OTLW 3ZG0A 3CC2W 3J7ZZ
chains in the Genus database with same CATH topology
5GAGa 3I55W 5JVGW 4IOCW 1VQ5W 1YITW 1KC8X 3PIPW 4IOAW 3CC4W 3G6EW 1QVFV 2QA4W 3CMEW 1VQ4W 3CCUW 1S72W 1K73X 3PIOW 1YJ9W 2QEXW 1Q82X 1VQ8W 1YHQW 4U67W 4UY8Z 3CMAW 1N8RX 3CCRW 3CCMW 2ZJQW 4WFAW 1VQMW 1KD1X 5DM7W 2ZJPW 3CC7W 1BXYA 3CPWV 5GAHa 3I56W 1Q86X 3G4SW 3CCSW 5GAEa 2OTJW 1VQ6W 1KQSV 3DLLW 1VQLW 1Q7YX 1NJIX 5GADa 1VQOW 2ZJRW 4WF9W 4C1NA 5DM6W 1YJWW 4WFNW 3CF5W 1W2BV 1M1KX 1YJNW 1K8AX 1VQPW 1YI2W 1JJ2V 3CD6W 3CXCV 3CCJW 4WCEW 3CCEW 3CCLW 3CCVW 1VQ9W 1M90X 1VQKW 5HL7W 1Q81X 3G71W 1VQNW 5JVHW 1K9MX 4WFBW 4IO9W 1VQ7W 1YIJW 1QVGV 3CCQW 3OW2V 2OTLW 3CC2W 3J7ZZ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GAG a;  3I55 W;  5JVG W;  4IOC W;  1VQ5 W;  1YIT W;  1KC8 X;  3PIP W;  4IOA W;  3CC4 W;  3G6E W;  1QVF V;  2QA4 W;  3CME W;  1VQ4 W;  3CCU W;  1S72 W;  1K73 X;  3PIO W;  1YJ9 W;  2QEX W;  1Q82 X;  1VQ8 W;  1YHQ W;  4U67 W;  4UY8 Z;  3CMA W;  1N8R X;  3CCR W;  3CCM W;  2ZJQ W;  4WFA W;  1VQM W;  1KD1 X;  5DM7 W;  2ZJP W;  3CC7 W;  1BXY A;  3CPW V;  5GAH a;  3I56 W;  1Q86 X;  3G4S W;  3CCS W;  5GAE a;  2OTJ W;  1VQ6 W;  1KQS V;  3DLL W;  1VQL W;  1Q7Y X;  1NJI X;  5GAD a;  1VQO W;  2ZJR W;  4WF9 W;  5DM6 W;  3CF5 W;  1YJW W;  4WFN W;  1W2B V;  1M1K X;  1YJN W;  1K8A X;  1VQP W;  1YI2 W;  1JJ2 V;  3CD6 W;  3CXC V;  3CCJ W;  4WCE W;  3CCE W;  3CCL W;  3CCV W;  1VQ9 W;  1M90 X;  1VQK W;  5HL7 W;  1Q81 X;  3G71 W;  1VQN W;  5JVH W;  1K9M X;  4WFB W;  4IO9 W;  1VQ7 W;  1YIJ W;  1QVG V;  3CCQ W;  3OW2 V;  2OTL W;  3CC2 W;  3J7Z Z; 
#chains in the Genus database with same CATH topology
 5GAG a;  4BL3 A;  3I55 W;  5JVG W;  4IOC W;  2WA9 A;  3W7S A;  1VQ5 W;  1YIT W;  1KC8 X;  3PIP W;  4IOA W;  3CC4 W;  3GW1 A;  3O1F B;  3W7T A;  3G6E W;  1QVF V;  5GW7 A;  5M1A A;  2QA4 W;  3CME W;  1VQ4 W;  3DNJ A;  3CCU W;  1S72 W;  3G1B A;  1K73 X;  4YKA A;  1MWU A;  3PIO W;  1YJ9 W;  1LZW A;  2QEX W;  1Q82 X;  1VQ8 W;  1RQU A;  3D3I A;  3W7X A;  1YHQ W;  4U67 W;  4UY8 Z;  1DD4 A;  3CMA W;  4CJN A;  1N8R X;  1RQV A;  3CCR W;  3CCM W;  5M19 A;  3O2O A;  2ZJQ W;  4WFA W;  1VQM W;  1MBU C;  1R6Q C;  1KD1 X;  3O2B A;  2WA8 A;  5DM7 W;  2ZJP W;  1RQS A;  3CC7 W;  1BXY A;  3CPW V;  1MWS A;  5GAH a;  3I56 W;  4BL2 A;  1Q86 X;  1CTF A;  3G4S W;  3CCS W;  3W7W A;  3W7U A;  5GAE a;  3ZG5 A;  2OTJ W;  1MWT A;  5CA3 A;  4YJX A;  1VQ6 W;  1MBX C;  3G19 A;  4YJM A;  1KQS V;  3DLL W;  1VQL W;  4CPK A;  1Q7Y X;  1NJI X;  5GAD a;  1VQO W;  3GQ0 A;  2ZJR W;  4WF9 W;  3O1F A;  1DD3 A;  2W9R A;  4C1N A;  5DM6 W;  1YJW W;  4WFN W;  3CF5 W;  1W2B V;  1M1K X;  1YJN W;  1K8A X;  1VQQ A;  3O2H A;  1VQP W;  1YI2 W;  1JJ2 V;  3CD6 W;  3CXC V;  3CCJ W;  3GQ1 A;  4WCE W;  3ZFZ A;  3CCE W;  1MG9 A;  3CCL W;  3CCV W;  1VQ9 W;  1M90 X;  1VQK W;  5M18 A;  1R6O C;  4DKI A;  1Q81 X;  5HL7 W;  3G71 W;  1MBV B;  1VQN W;  5JVH W;  1K9M X;  4WFB W;  4IO9 W;  1VQ7 W;  3G3P A;  1YIJ W;  1MWR A;  1QVG V;  3CCQ W;  3OW2 V;  2OTL W;  3ZG0 A;  3CC2 W;  3J7Z Z; 
#chains in the Genus database with same CATH homology
 5GAG a;  3I55 W;  5JVG W;  4IOC W;  1VQ5 W;  1YIT W;  1KC8 X;  3PIP W;  4IOA W;  3CC4 W;  3G6E W;  1QVF V;  2QA4 W;  3CME W;  1VQ4 W;  3CCU W;  1S72 W;  1K73 X;  3PIO W;  1YJ9 W;  2QEX W;  1Q82 X;  1VQ8 W;  1YHQ W;  4U67 W;  4UY8 Z;  3CMA W;  1N8R X;  3CCR W;  3CCM W;  2ZJQ W;  4WFA W;  1VQM W;  1KD1 X;  5DM7 W;  2ZJP W;  3CC7 W;  1BXY A;  3CPW V;  5GAH a;  3I56 W;  1Q86 X;  3G4S W;  3CCS W;  5GAE a;  2OTJ W;  1VQ6 W;  1KQS V;  3DLL W;  1VQL W;  1Q7Y X;  1NJI X;  5GAD a;  1VQO W;  2ZJR W;  4WF9 W;  4C1N A;  5DM6 W;  1YJW W;  4WFN W;  3CF5 W;  1W2B V;  1M1K X;  1YJN W;  1K8A X;  1VQP W;  1YI2 W;  1JJ2 V;  3CD6 W;  3CXC V;  3CCJ W;  4WCE W;  3CCE W;  3CCL W;  3CCV W;  1VQ9 W;  1M90 X;  1VQK W;  5HL7 W;  1Q81 X;  3G71 W;  1VQN W;  5JVH W;  1K9M X;  4WFB W;  4IO9 W;  1VQ7 W;  1YIJ W;  1QVG V;  3CCQ W;  3OW2 V;  2OTL W;  3CC2 W;  3J7Z Z; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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