1M1K | Genus

Total Genus 47

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	47
sequence length	154
structure length	154
Chain Sequence	MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	The structures of four macrolide antibiotics bound to the large ribosomal subunit. pubmed doi rcsb
molecule keywords	23S RRNA
total genus	47
structure length	154
sequence length	154
ec nomenclature
pdb deposition date	2002-06-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
X	PF00327	Ribosomal_L30	Ribosomal protein L30p/L7e

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.15.30	Mainly Alpha	Orthogonal Bundle	3-methyladenine DNA Glycosylase II; Chain A, domain 3	3-methyladenine DNA Glycosylase II; Chain A, domain 3	1m1kX02
3.30.1390.20	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30; Chain: A,	Ribosomal protein L30, ferredoxin-like fold domain	1m1kX01

1VQ7W 3CPWV 1QVFV 5GAEa 5DM7W 3CC2W 1YI2W 1YJ9W 3CCVW 3CF5W 3G71W 2ZJRW 1VQPW 1VQLW 3PIPW 1VQKW 1YJWW 1KQSV 5GAHa 4WF9W 3I55W 4IOAW 3G4SW 5DM6W 1Q81X 3G6EW 3CCSW 5GAGa 3CCLW 1VQNW 1K9MX 3CC4W 3CCEW 1JJ2V 2ZJQW 3CMAW 5GADa 1W2BV 3DLLW 1YJNW 1Q7YX 4WCEW 3CCUW 4IO9W 1K73X 4WFNW 3CCMW 4IOCW 1VQ5W 4WFAW 4UY8Z 3I56W 2ZJPW 1QVGV 2OTLW 4WFBW 3CD6W 1VQ4W 1VQ9W 1Q86X 1N8RX 1VQ8W 4U67W 1VQOW 5HL7W 3CC7W 1YIJW 5JVHW 3CXCV 1VQMW 1M1KX 3CMEW 1KD1X 1K8AX 3CCRW 1BXYA 2OTJW 1KC8X 3PIOW 3OW2V 1YITW 1M90X 3J7ZZ 1Q82X 2QEXW 5JVGW 3CCQW 3CCJW 1VQ6W 1YHQW 1S72W 2QA4W 1NJIX
chains in the Genus database with same CATH superfamily

1VQ7W 4YJXA 3W7WA 3CPWV 1QVFV 5GAEa 5DM7W 3W7XA 3CC2W 3G19A 1YI2W 5M18A 1YJ9W 3CCVW 3CF5W 3G71W 2ZJRW 1VQPW 1VQLW 3PIPW 1VQKW 1YJWW 1KQSV 3ZG5A 5GAHa 4WF9W 3I55W 5CA3A 1RQVA 4IOAW 3G4SW 5DM6W 1Q81X 3G6EW 4YJMA 3CCSW 3W7UA 5GAGa 3CCLW 3G3PA 3GQ1A 1VQNW 1K9MX 1R6QC 3CC4W 3CCEW 1JJ2V 2ZJQW 3O1FA 4BL3A 3CMAW 5GADa 1W2BV 3W7SA 1VQQA 1DD3A 3DLLW 1YJNW 3O1FB 1Q7YX 4WCEW 4CPKA 3W7TA 3O2HA 3ZFZA 3CCUW 4IO9W 1K73X 4WFNW 3CCMW 4IOCW 1MBUC 1VQ5W 4WFAW 4UY8Z 3I56W 2ZJPW 1MWTA 1QVGV 2OTLW 1R6OC 2W9RA 4C1NA 1MWUA 4WFBW 3CD6W 3GW1A 1VQ4W 1VQ9W 1Q86X 1N8RX 4YKAA 1VQ8W 4U67W 1VQOW 3CC7W 5HL7W 1YIJW 1CTFA 5JVHW 3CXCV 1VQMW 1DD4A 1M1KX 1RQUA 5M1AA 1MBVB 3CMEW 1RQSA 3DNJA 3ZG0A 1MBXC 2WA8A 1KD1X 3O2OA 1K8AX 3O2BA 3CCRW 1BXYA 2OTJW 1KC8X 4CJNA 3D3IA 3PIOW 3OW2V 1YITW 3G1BA 1M90X 5M19A 1MWRA 3J7ZZ 4DKIA 1MG9A 1Q82X 2QEXW 5JVGW 3CCQW 1LZWA 3CCJW 1VQ6W 1YHQW 4BL2A 1S72W 2WA9A 1MWSA 3GQ0A 2QA4W 5GW7A 1NJIX
chains in the Genus database with same CATH topology

1VQ7W 3CPWV 1QVFV 5GAEa 5DM7W 3CC2W 1YI2W 1YJ9W 3CCVW 3CF5W 3G71W 2ZJRW 1VQPW 1VQLW 3PIPW 1VQKW 1YJWW 1KQSV 5GAHa 4WF9W 3I55W 4IOAW 3G4SW 5DM6W 1Q81X 3G6EW 3CCSW 5GAGa 3CCLW 1VQNW 1K9MX 3CC4W 3CCEW 1JJ2V 2ZJQW 3CMAW 5GADa 1W2BV 3DLLW 1YJNW 1Q7YX 4WCEW 3CCUW 4IO9W 1K73X 4WFNW 3CCMW 4IOCW 1VQ5W 4WFAW 4UY8Z 3I56W 2ZJPW 1QVGV 2OTLW 4C1NA 4WFBW 3CD6W 1VQ4W 1VQ9W 1Q86X 1N8RX 1VQ8W 4U67W 1VQOW 5HL7W 3CC7W 1YIJW 5JVHW 3CXCV 1VQMW 1M1KX 3CMEW 1KD1X 1K8AX 3CCRW 1BXYA 2OTJW 1KC8X 3PIOW 3OW2V 1YITW 1M90X 3J7ZZ 1Q82X 2QEXW 5JVGW 3CCQW 3CCJW 1VQ6W 1YHQW 1S72W 2QA4W 1NJIX
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1VQ7 W;  3CPW V;  1QVF V;  5GAE a;  5DM7 W;  3CC2 W;  1YI2 W;  1YJ9 W;  3CCV W;  3CF5 W;  3G71 W;  2ZJR W;  1VQP W;  1VQL W;  3PIP W;  1VQK W;  1YJW W;  1KQS V;  5GAH a;  4WF9 W;  3I55 W;  4IOA W;  3G4S W;  5DM6 W;  1Q81 X;  3G6E W;  3CCS W;  5GAG a;  3CCL W;  1VQN W;  1K9M X;  3CC4 W;  3CCE W;  1JJ2 V;  2ZJQ W;  3CMA W;  5GAD a;  1W2B V;  3DLL W;  1YJN W;  1Q7Y X;  4WCE W;  3CCU W;  4IO9 W;  1K73 X;  4WFN W;  3CCM W;  4IOC W;  1VQ5 W;  4WFA W;  4UY8 Z;  3I56 W;  2ZJP W;  1QVG V;  2OTL W;  4WFB W;  3CD6 W;  1VQ4 W;  1VQ9 W;  1Q86 X;  1N8R X;  1VQ8 W;  4U67 W;  1VQO W;  5HL7 W;  3CC7 W;  1YIJ W;  5JVH W;  3CXC V;  1VQM W;  1M1K X;  3CME W;  1KD1 X;  1K8A X;  3CCR W;  1BXY A;  2OTJ W;  1KC8 X;  3PIO W;  3OW2 V;  1YIT W;  1M90 X;  3J7Z Z;  1Q82 X;  2QEX W;  5JVG W;  3CCQ W;  3CCJ W;  1VQ6 W;  1YHQ W;  1S72 W;  2QA4 W;  1NJI X; 
#chains in the Genus database with same CATH topology
 1VQ7 W;  4YJX A;  3W7W A;  3CPW V;  1QVF V;  5GAE a;  5DM7 W;  3W7X A;  3CC2 W;  3G19 A;  1YI2 W;  5M18 A;  1YJ9 W;  3CCV W;  3CF5 W;  3G71 W;  2ZJR W;  1VQP W;  1VQL W;  3PIP W;  1VQK W;  1YJW W;  1KQS V;  3ZG5 A;  5GAH a;  4WF9 W;  3I55 W;  5CA3 A;  1RQV A;  4IOA W;  3G4S W;  5DM6 W;  1Q81 X;  3G6E W;  4YJM A;  3CCS W;  3W7U A;  5GAG a;  3CCL W;  3G3P A;  3GQ1 A;  1VQN W;  1K9M X;  1R6Q C;  3CC4 W;  3CCE W;  1JJ2 V;  2ZJQ W;  3O1F A;  4BL3 A;  3CMA W;  5GAD a;  1W2B V;  3W7S A;  1VQQ A;  1DD3 A;  3DLL W;  1YJN W;  3O1F B;  1Q7Y X;  4WCE W;  4CPK A;  3W7T A;  3O2H A;  3ZFZ A;  3CCU W;  4IO9 W;  1K73 X;  4WFN W;  3CCM W;  4IOC W;  1MBU C;  1VQ5 W;  4WFA W;  4UY8 Z;  3I56 W;  2ZJP W;  1MWT A;  1QVG V;  2OTL W;  1R6O C;  2W9R A;  4C1N A;  1MWU A;  4WFB W;  3CD6 W;  3GW1 A;  1VQ4 W;  1VQ9 W;  1Q86 X;  1N8R X;  4YKA A;  1VQ8 W;  4U67 W;  1VQO W;  3CC7 W;  5HL7 W;  1YIJ W;  1CTF A;  5JVH W;  3CXC V;  1VQM W;  1DD4 A;  1M1K X;  1RQU A;  5M1A A;  1MBV B;  3CME W;  1RQS A;  3DNJ A;  3ZG0 A;  1MBX C;  2WA8 A;  1KD1 X;  3O2O A;  1K8A X;  3O2B A;  3CCR W;  1BXY A;  2OTJ W;  1KC8 X;  4CJN A;  3D3I A;  3PIO W;  3OW2 V;  1YIT W;  3G1B A;  1M90 X;  5M19 A;  1MWR A;  3J7Z Z;  4DKI A;  1MG9 A;  1Q82 X;  2QEX W;  5JVG W;  3CCQ W;  1LZW A;  3CCJ W;  1VQ6 W;  1YHQ W;  4BL2 A;  1S72 W;  2WA9 A;  1MWS A;  3GQ0 A;  2QA4 W;  5GW7 A;  1NJI X; 
#chains in the Genus database with same CATH homology
 1VQ7 W;  3CPW V;  1QVF V;  5GAE a;  5DM7 W;  3CC2 W;  1YI2 W;  1YJ9 W;  3CCV W;  3CF5 W;  3G71 W;  2ZJR W;  1VQP W;  1VQL W;  3PIP W;  1VQK W;  1YJW W;  1KQS V;  5GAH a;  4WF9 W;  3I55 W;  4IOA W;  3G4S W;  5DM6 W;  1Q81 X;  3G6E W;  3CCS W;  5GAG a;  3CCL W;  1VQN W;  1K9M X;  3CC4 W;  3CCE W;  1JJ2 V;  2ZJQ W;  3CMA W;  5GAD a;  1W2B V;  3DLL W;  1YJN W;  1Q7Y X;  4WCE W;  3CCU W;  4IO9 W;  1K73 X;  4WFN W;  3CCM W;  4IOC W;  1VQ5 W;  4WFA W;  4UY8 Z;  3I56 W;  2ZJP W;  1QVG V;  2OTL W;  4C1N A;  4WFB W;  3CD6 W;  1VQ4 W;  1VQ9 W;  1Q86 X;  1N8R X;  1VQ8 W;  4U67 W;  1VQO W;  5HL7 W;  3CC7 W;  1YIJ W;  5JVH W;  3CXC V;  1VQM W;  1M1K X;  3CME W;  1KD1 X;  1K8A X;  3CCR W;  1BXY A;  2OTJ W;  1KC8 X;  3PIO W;  3OW2 V;  1YIT W;  1M90 X;  3J7Z Z;  1Q82 X;  2QEX W;  5JVG W;  3CCQ W;  3CCJ W;  1VQ6 W;  1YHQ W;  1S72 W;  2QA4 W;  1NJI X;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1M1KX

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations