1M90X

Co-crystal structure of cca-phe-caproic acid-biotin and sparsomycin bound to the 50s ribosomal subunit
Total Genus 50

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR
2040608010012014014012010080604020
01020304050Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYS1 (2-6)TII2 (28-31)TII1 (10-13)AH1 (15-24)AH2 (39-48)S2 (31-35)S4 (115-117)S3 (52-55)AH3 (59-69)AH5 (93-102)AH6 (143-153)TI3 (108-111)TVIII1 (72-75)AH4 (81-86)TIV1 (106-109)TIV2 (107-110)TII3 (121-124)TI1 (48-51)S5 (139-140)TIV3 (127-130)3H1 (132-134)Updating...
connected with : NaN
molecule tags Ribosome
publication title Structural insights into peptide bond formation.
pubmed doi rcsb
molecule keywords 23S RRNA
total genus 50
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2002-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 1m90X02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 1m90X01
1QVGV 1QVFV 5HL7W 4U67W 3CCEW 5DM7W 3CCSW 1K9MX 4UY8Z 3CCUW 1K73X 2ZJQW 1Q86X 3CC7W 3CXCV 4IOCW 4WF9W 1VQ5W 1VQMW 3CD6W 3J7ZZ 3CPWV 1VQ8W 5GADa 1S72W 2ZJPW 1VQ4W 1YITW 3CCLW 1VQOW 3G71W 1YIJW 1VQKW 1W2BV 1VQ7W 5GAHa 1NJIX 1VQ9W 5DM6W 2OTLW 3CMAW 3CF5W 4WFBW 3CC2W 3CC4W 1JJ2V 3CCQW 1VQNW 2QA4W 1VQLW 1YI2W 3OW2V 1KQSV 1M90X 3CCRW 1Q82X 3PIOW 3PIPW 3I55W 1YJ9W 1Q81X 2OTJW 1N8RX 1YHQW 1Q7YX 1YJWW 5GAEa 1BXYA 1KC8X 1KD1X 1VQ6W 3I56W 3CCVW 4IOAW 1VQPW 1K8AX 4IO9W 5JVHW 5GAGa 3G6EW 1YJNW 4WCEW 5JVGW 3G4SW 4WFNW 2QEXW 3CCJW 1M1KX 3CMEW 3CCMW 3DLLW 2ZJRW 4WFAW
chains in the Genus database with same CATH superfamily
1MWUA 4WFAW 1QVGV 1QVFV 2W9RA 3G1BA 3GQ1A 5HL7W 4U67W 3W7SA 3DNJA 4BL2A 4DKIA 3CCEW 5DM7W 3CCSW 1K9MX 1RQUA 4UY8Z 3CCUW 1K73X 2ZJQW 1Q86X 3CC7W 3CXCV 4IOCW 1MWSA 3G19A 4WF9W 1VQ5W 1VQMW 3CD6W 3J7ZZ 3D3IA 3CPWV 1MBXC 1VQ8W 3O2OA 1VQQA 3ZG0A 5GADa 1S72W 1LZWA 3O1FB 2ZJPW 1VQ4W 1YITW 3CCLW 1VQOW 3G71W 1YIJW 1CTFA 1VQKW 5M19A 3W7WA 1W2BV 1VQ7W 5GAHa 4YKAA 1NJIX 1VQ9W 1MWTA 5DM6W 2OTLW 1MBVB 3CMAW 3CF5W 4WFBW 3CC2W 3CC4W 1JJ2V 3CCQW 4CPKA 5M1AA 1VQNW 2QA4W 3GQ0A 1VQLW 1YI2W 1MBUC 5GW7A 3OW2V 5CA3A 3O1FA 1R6QC 1KQSV 4BL3A 3G3PA 3ZFZA 1M90X 1R6OC 3CCRW 1Q82X 3PIOW 3O2BA 3PIPW 3I55W 1RQSA 4YJXA 1YJ9W 2WA9A 3W7TA 1Q81X 2OTJW 1N8RX 1DD4A 3GW1A 1YHQW 1Q7YX 1YJWW 5GAEa 4CJNA 1MWRA 3O2HA 1BXYA 1KC8X 1KD1X 2WA8A 1MG9A 1VQ6W 3I56W 3CCVW 4IOAW 1VQPW 5M18A 1K8AX 4IO9W 5JVHW 5GAGa 3G6EW 1YJNW 3W7XA 4WCEW 1RQVA 4C1NA 5JVGW 3ZG5A 3G4SW 4WFNW 2QEXW 3CCJW 3W7UA 1M1KX 3CMEW 3CCMW 1DD3A 3DLLW 2ZJRW 4YJMA
chains in the Genus database with same CATH topology
1QVGV 1QVFV 5HL7W 4U67W 3CCEW 5DM7W 3CCSW 1K9MX 4UY8Z 3CCUW 1K73X 2ZJQW 1Q86X 3CC7W 3CXCV 4IOCW 4WF9W 1VQ5W 1VQMW 3CD6W 3J7ZZ 3CPWV 1VQ8W 5GADa 1S72W 2ZJPW 1VQ4W 1YITW 3CCLW 1VQOW 3G71W 1YIJW 1VQKW 1W2BV 1VQ7W 5GAHa 1NJIX 1VQ9W 5DM6W 2OTLW 3CMAW 3CF5W 4WFBW 3CC2W 3CC4W 1JJ2V 3CCQW 1VQNW 2QA4W 1VQLW 1YI2W 3OW2V 1KQSV 1M90X 3CCRW 1Q82X 3PIOW 3PIPW 3I55W 1YJ9W 1Q81X 2OTJW 1N8RX 1YHQW 1Q7YX 1YJWW 5GAEa 1BXYA 1KC8X 1KD1X 1VQ6W 3I56W 3CCVW 4IOAW 1VQPW 1K8AX 4IO9W 5JVHW 5GAGa 3G6EW 1YJNW 4WCEW 5JVGW 4C1NA 3G4SW 4WFNW 2QEXW 3CCJW 1M1KX 3CMEW 3CCMW 3DLLW 2ZJRW 4WFAW
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1QVG V;  1QVF V;  5HL7 W;  4U67 W;  3CCE W;  5DM7 W;  3CCS W;  1K9M X;  4UY8 Z;  3CCU W;  1K73 X;  2ZJQ W;  1Q86 X;  3CC7 W;  3CXC V;  4IOC W;  4WF9 W;  1VQ5 W;  1VQM W;  3CD6 W;  3J7Z Z;  3CPW V;  1VQ8 W;  5GAD a;  1S72 W;  2ZJP W;  1VQ4 W;  1YIT W;  3CCL W;  1VQO W;  3G71 W;  1YIJ W;  1VQK W;  1W2B V;  1VQ7 W;  5GAH a;  1NJI X;  1VQ9 W;  5DM6 W;  2OTL W;  3CMA W;  3CF5 W;  4WFB W;  3CC2 W;  3CC4 W;  1JJ2 V;  3CCQ W;  1VQN W;  2QA4 W;  1VQL W;  1YI2 W;  3OW2 V;  1KQS V;  1M90 X;  3CCR W;  1Q82 X;  3PIO W;  3PIP W;  3I55 W;  1YJ9 W;  1Q81 X;  2OTJ W;  1N8R X;  1YHQ W;  1Q7Y X;  1YJW W;  5GAE a;  1BXY A;  1KC8 X;  1KD1 X;  1VQ6 W;  3I56 W;  3CCV W;  4IOA W;  1VQP W;  1K8A X;  4IO9 W;  5JVH W;  5GAG a;  3G6E W;  1YJN W;  4WCE W;  5JVG W;  3G4S W;  4WFN W;  2QEX W;  3CCJ W;  1M1K X;  3CME W;  3CCM W;  3DLL W;  2ZJR W;  4WFA W; 
#chains in the Genus database with same CATH topology
 1MWU A;  4WFA W;  1QVG V;  1QVF V;  2W9R A;  3G1B A;  3GQ1 A;  5HL7 W;  4U67 W;  3W7S A;  3DNJ A;  4BL2 A;  4DKI A;  3CCE W;  5DM7 W;  3CCS W;  1K9M X;  1RQU A;  4UY8 Z;  3CCU W;  1K73 X;  2ZJQ W;  1Q86 X;  3CC7 W;  3CXC V;  4IOC W;  1MWS A;  3G19 A;  4WF9 W;  1VQ5 W;  1VQM W;  3CD6 W;  3J7Z Z;  3D3I A;  3CPW V;  1MBX C;  1VQ8 W;  3O2O A;  1VQQ A;  3ZG0 A;  5GAD a;  1S72 W;  1LZW A;  3O1F B;  2ZJP W;  1VQ4 W;  1YIT W;  3CCL W;  1VQO W;  3G71 W;  1YIJ W;  1CTF A;  1VQK W;  5M19 A;  3W7W A;  1W2B V;  1VQ7 W;  5GAH a;  4YKA A;  1NJI X;  1VQ9 W;  1MWT A;  5DM6 W;  2OTL W;  1MBV B;  3CMA W;  3CF5 W;  4WFB W;  3CC2 W;  3CC4 W;  1JJ2 V;  3CCQ W;  4CPK A;  5M1A A;  1VQN W;  2QA4 W;  3GQ0 A;  1VQL W;  1YI2 W;  1MBU C;  5GW7 A;  3OW2 V;  5CA3 A;  3O1F A;  1R6Q C;  1KQS V;  4BL3 A;  3G3P A;  3ZFZ A;  1M90 X;  1R6O C;  3CCR W;  1Q82 X;  3PIO W;  3O2B A;  3PIP W;  3I55 W;  1RQS A;  4YJX A;  1YJ9 W;  2WA9 A;  3W7T A;  1Q81 X;  2OTJ W;  1N8R X;  1DD4 A;  3GW1 A;  1YHQ W;  1Q7Y X;  1YJW W;  5GAE a;  4CJN A;  1MWR A;  3O2H A;  1BXY A;  1KC8 X;  1KD1 X;  2WA8 A;  1MG9 A;  1VQ6 W;  3I56 W;  3CCV W;  4IOA W;  1VQP W;  5M18 A;  1K8A X;  4IO9 W;  5JVH W;  5GAG a;  3G6E W;  1YJN W;  3W7X A;  4WCE W;  1RQV A;  4C1N A;  5JVG W;  3ZG5 A;  3G4S W;  4WFN W;  2QEX W;  3CCJ W;  3W7U A;  1M1K X;  3CME W;  3CCM W;  1DD3 A;  3DLL W;  2ZJR W;  4YJM A; 
#chains in the Genus database with same CATH homology
 1QVG V;  1QVF V;  5HL7 W;  4U67 W;  3CCE W;  5DM7 W;  3CCS W;  1K9M X;  4UY8 Z;  3CCU W;  1K73 X;  2ZJQ W;  1Q86 X;  3CC7 W;  3CXC V;  4IOC W;  4WF9 W;  1VQ5 W;  1VQM W;  3CD6 W;  3J7Z Z;  3CPW V;  1VQ8 W;  5GAD a;  1S72 W;  2ZJP W;  1VQ4 W;  1YIT W;  3CCL W;  1VQO W;  3G71 W;  1YIJ W;  1VQK W;  1W2B V;  1VQ7 W;  5GAH a;  1NJI X;  1VQ9 W;  5DM6 W;  2OTL W;  3CMA W;  3CF5 W;  4WFB W;  3CC2 W;  3CC4 W;  1JJ2 V;  3CCQ W;  1VQN W;  2QA4 W;  1VQL W;  1YI2 W;  3OW2 V;  1KQS V;  1M90 X;  3CCR W;  1Q82 X;  3PIO W;  3PIP W;  3I55 W;  1YJ9 W;  1Q81 X;  2OTJ W;  1N8R X;  1YHQ W;  1Q7Y X;  1YJW W;  5GAE a;  1BXY A;  1KC8 X;  1KD1 X;  1VQ6 W;  3I56 W;  3CCV W;  4IOA W;  1VQP W;  1K8A X;  4IO9 W;  5JVH W;  5GAG a;  3G6E W;  1YJN W;  4WCE W;  5JVG W;  4C1N A;  3G4S W;  4WFN W;  2QEX W;  3CCJ W;  1M1K X;  3CME W;  3CCM W;  3DLL W;  2ZJR W;  4WFA W;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
Application loaded.