1NL1A

Bovine prothrombin fragment 1 in complex with calcium ion
Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
147
structure length
137
Chain Sequence
ANKGFLVRKGNLRCLPCSRAFALSLSATDAFWAKYTACESARNPREKLNECLEGNCAEGVGMNYRGNVSVTRSGIECQLWRSRYPHKPEINSTTHPGADLRENFCRNPDGSITGPWCYTTSPTLRREECSVPVCGQD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (14-19)TIV2 (18-23)TIV4 (28-32)TIV5 (49-52)AH1 (35-48)AH2 (55-63)TI1 (48-51)TIV6 (52-55)TVIII1 (64-67)TII1 (105-108)TIV7 (67-70)TVIII2 (94-97)TIV8 (103-106)O4 (66-144)TII'1 (68-71)S1 (126-128)TI3 (81-84)TI8 (121-124)TI4 (89-92)TVIII3 (98-101)TVIb1 (93-96)TI5 (101-104)TI6 (102-105)O1 (109-111)TIV9 (111-114)TI7 (117-120)S2 (136-138)TI9 (131-134)TIV3 (23-28)TI2 (71-74)Updating...
connected with : NaN
molecule tags Hydrolase
publication title Structural basis of membrane binding by Gla domains of vitamin K-dependent proteins.
pubmed doi rcsb
molecule keywords Prothrombin
total genus 36
structure length 137
sequence length 147
ec nomenclature ec 3.4.21.5: Thrombin.
pdb deposition date 2003-01-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00051 Kringle Kringle domain
A PF00594 Gla Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.20.10 Mainly Beta Beta Barrel Plasminogen Kringle 4 Plasminogen Kringle 4 1nl1A00
1KRNA 2SPTA 4BVVA 5CS5A 2K4RA 2FEBA 1HPKA 3LAQA 1CEBA 4HZHA 1GMOA 4KIVA 2PK4A 2DOIA 5CS3A 2KNFA 4NZQA 1CEAA 2QJ2A 2HPPP 1PK2A 1HPJA 2L0SA 3K65A 3SP8A 4BV7A 3KIVA 2DOHX 3HN4A 1PKRA 5CS1A 1KIVA 3E6PL 2K51A 4O03A 5CSQA 1NK1A 3NXPA 4A5TS 4IUAA 3MKPA 1PMKA 4BV5A 5HPGA 3BT1A 4D3CA 5CT2A 2PF1A 4BVCA 1PMLA 1NL2A 1GMNA 1URKA 1KDUA 1B2IA 1PK4A 1TPKA 4CIKA 2FD6A 5CT1A 4DURA 2PF2A 2QJ4A 1JFNA 1GP9A 2I9BA 5CP9A 1BHTA 1I5KA 2HPQP 3U73A 1NL1A 1A0HA 4BVWA 2KJ4A 3BT2A 5CS9A 5CT3A 1KI0A 2I9AA 1I71A 4BVDA 5COEA
chains in the Genus database with same CATH superfamily
1KRNA 2SPTA 4BVVA 5CS5A 2K4RA 2FEBA 1HPKA 3LAQA 1CEBA 4HZHA 1GMOA 4KIVA 2PK4A 2DOIA 5CS3A 2KNFA 4NZQA 1CEAA 2QJ2A 2HPPP 1PK2A 1HPJA 2L0SA 3K65A 3SP8A 4BV7A 3KIVA 2DOHX 3HN4A 1PKRA 5CS1A 1KIVA 3E6PL 2K51A 4O03A 5CSQA 1NK1A 3NXPA 4A5TS 4IUAA 3MKPA 1PMKA 4BV5A 5HPGA 3BT1A 4D3CA 5CT2A 2PF1A 4BVCA 1PMLA 1NL2A 1GMNA 1URKA 1KDUA 1B2IA 1PK4A 1TPKA 4CIKA 2FD6A 5CT1A 4DURA 2PF2A 2QJ4A 1JFNA 1GP9A 2I9BA 5CP9A 1BHTA 1I5KA 2HPQP 3U73A 1NL1A 1A0HA 4BVWA 2KJ4A 3BT2A 5CS9A 5CT3A 1KI0A 2I9AA 1I71A 4BVDA 5COEA
chains in the Genus database with same CATH topology
1KRNA 2SPTA 4BVVA 5CS5A 2K4RA 2FEBA 1HPKA 3LAQA 1CEBA 4HZHA 1GMOA 4KIVA 2PK4A 2DOIA 5CS3A 2KNFA 4NZQA 1CEAA 2QJ2A 2HPPP 1PK2A 1HPJA 2L0SA 3K65A 3SP8A 4BV7A 3KIVA 2DOHX 3HN4A 1PKRA 5CS1A 1KIVA 3E6PL 2K51A 4O03A 5CSQA 1NK1A 3NXPA 4A5TS 4IUAA 3MKPA 1PMKA 4BV5A 5HPGA 3BT1A 4D3CA 5CT2A 2PF1A 4BVCA 1PMLA 1NL2A 1GMNA 1URKA 1KDUA 1B2IA 1PK4A 1TPKA 4CIKA 2FD6A 5CT1A 4DURA 2PF2A 2QJ4A 1JFNA 1GP9A 2I9BA 5CP9A 1BHTA 1I5KA 2HPQP 3U73A 1NL1A 1A0HA 4BVWA 2KJ4A 3BT2A 5CS9A 5CT3A 1KI0A 2I9AA 1I71A 4BVDA 5COEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KRN A;  2SPT A;  4BVV A;  5CS5 A;  2K4R A;  2FEB A;  1HPK A;  3LAQ A;  1CEB A;  4HZH A;  1GMO A;  4KIV A;  2PK4 A;  2DOI A;  5CS3 A;  2KNF A;  4NZQ A;  1CEA A;  2QJ2 A;  2HPP P;  1PK2 A;  1HPJ A;  2L0S A;  3K65 A;  3SP8 A;  4BV7 A;  3KIV A;  2DOH X;  3HN4 A;  1PKR A;  5CS1 A;  1KIV A;  3E6P L;  2K51 A;  4O03 A;  5CSQ A;  1NK1 A;  3NXP A;  4A5T S;  4IUA A;  3MKP A;  1PMK A;  4BV5 A;  5HPG A;  3BT1 A;  4D3C A;  5CT2 A;  2PF1 A;  4BVC A;  1PML A;  1NL2 A;  1GMN A;  1URK A;  1KDU A;  1B2I A;  1PK4 A;  1TPK A;  4CIK A;  2FD6 A;  5CT1 A;  4DUR A;  2PF2 A;  2QJ4 A;  1JFN A;  1GP9 A;  2I9B A;  5CP9 A;  1BHT A;  1I5K A;  2HPQ P;  3U73 A;  1NL1 A;  1A0H A;  4BVW A;  2KJ4 A;  3BT2 A;  5CS9 A;  5CT3 A;  1KI0 A;  2I9A A;  1I71 A;  4BVD A;  5COE A; 
#chains in the Genus database with same CATH topology
 1KRN A;  2SPT A;  4BVV A;  5CS5 A;  2K4R A;  2FEB A;  1HPK A;  3LAQ A;  1CEB A;  4HZH A;  1GMO A;  4KIV A;  2PK4 A;  2DOI A;  5CS3 A;  2KNF A;  4NZQ A;  1CEA A;  2QJ2 A;  2HPP P;  1PK2 A;  1HPJ A;  2L0S A;  3K65 A;  3SP8 A;  4BV7 A;  3KIV A;  2DOH X;  3HN4 A;  1PKR A;  5CS1 A;  1KIV A;  3E6P L;  2K51 A;  4O03 A;  5CSQ A;  1NK1 A;  3NXP A;  4A5T S;  4IUA A;  3MKP A;  1PMK A;  4BV5 A;  5HPG A;  3BT1 A;  4D3C A;  5CT2 A;  2PF1 A;  4BVC A;  1PML A;  1NL2 A;  1GMN A;  1URK A;  1KDU A;  1B2I A;  1PK4 A;  1TPK A;  4CIK A;  2FD6 A;  5CT1 A;  4DUR A;  2PF2 A;  2QJ4 A;  1JFN A;  1GP9 A;  2I9B A;  5CP9 A;  1BHT A;  1I5K A;  2HPQ P;  3U73 A;  1NL1 A;  1A0H A;  4BVW A;  2KJ4 A;  3BT2 A;  5CS9 A;  5CT3 A;  1KI0 A;  2I9A A;  1I71 A;  4BVD A;  5COE A; 
#chains in the Genus database with same CATH homology
 1KRN A;  2SPT A;  4BVV A;  5CS5 A;  2K4R A;  2FEB A;  1HPK A;  3LAQ A;  1CEB A;  4HZH A;  1GMO A;  4KIV A;  2PK4 A;  2DOI A;  5CS3 A;  2KNF A;  4NZQ A;  1CEA A;  2QJ2 A;  2HPP P;  1PK2 A;  1HPJ A;  2L0S A;  3K65 A;  3SP8 A;  4BV7 A;  3KIV A;  2DOH X;  3HN4 A;  1PKR A;  5CS1 A;  1KIV A;  3E6P L;  2K51 A;  4O03 A;  5CSQ A;  1NK1 A;  3NXP A;  4A5T S;  4IUA A;  3MKP A;  1PMK A;  4BV5 A;  5HPG A;  3BT1 A;  4D3C A;  5CT2 A;  2PF1 A;  4BVC A;  1PML A;  1NL2 A;  1GMN A;  1URK A;  1KDU A;  1B2I A;  1PK4 A;  1TPK A;  4CIK A;  2FD6 A;  5CT1 A;  4DUR A;  2PF2 A;  2QJ4 A;  1JFN A;  1GP9 A;  2I9B A;  5CP9 A;  1BHT A;  1I5K A;  2HPQ P;  3U73 A;  1NL1 A;  1A0H A;  4BVW A;  2KJ4 A;  3BT2 A;  5CS9 A;  5CT3 A;  1KI0 A;  2I9A A;  1I71 A;  4BVD A;  5COE A; 
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