1O9D | Genus

Total Genus 108

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	108
sequence length	235
structure length	230
Chain Sequence	PTAREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHVNSIREYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGDSTLIMQLLRDNLTLWTS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein binding
source organism	Nicotiana tabacum
publication title	Structural View of a Fungal Toxin Acting on a 14-3-3 Regulatory Complex pubmed doi rcsb
molecule keywords	14-3-3-LIKE PROTEIN C
total genus	108
structure length	230
sequence length	235
ec nomenclature
pdb deposition date	2002-12-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00244	14-3-3	14-3-3 protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin; domain 1	14-3-3 domain	1o9dA00

5D2DA 4DX0A 5EXAA 4GNTA 3LW1A 5HF3A 2C1NA 3U9XA 5LVZA 3M50A 3IQUA 3M51A 5J31A 3T0MA 3SMNA 4DHUA 4J6SA 3P1RA 3EFZA 4DHOA 5D3FA 4N7YA 3SMMA 1YZ5A 4N7GA 3O8IA 4FL5A 2O8PA 2BQ0A 3UX0A 4DNKA 2C23A 4DHSA 1O9EA 3CU8A 5D3EA 4E2EA 3SPRA 4WRQA 4DHPA 3P1QA 1A38A 2WH0A 3P1NA 4ZQ0A 4DHMA 4DHTA 1O9DA 4DAUA 1QJAA 2V7DA 4N84A 3NKXA 3P1PA 3MHRA 3UBWA 4ZDRA 4IEAA 4DHNA 4Y3BA 1O9FA 4QLIA 4F7RA 4HKCA 5LU2A 5BTVA 1A4OA 2BR9A 1IB1A 4DHQA 2BTPA 5EWZA 3P1SA 3UZDA 2O98A 1YWTA 3RDHA 4Y32A 3IQJA 2C1JA 3IQVA 4FJ3A 2B05A 2C74A 4IHLA 3SP5A 5IQPA 1O9CA 3SMLA 1QJBA 3T0LA 3UALA 5LHOA 1A37A 3E6YA 4DATA 4JDDA 2C63A 4JC3A 5LX2A 4Y5IA 4DHRA 4O46A 2O02A 2NPMA 4FR3A 4BG6A 5LU1A 5F74A 3SMOA 3P1OA 3SMKA 5BY9A 3AXYC
chains in the Genus database with same CATH superfamily

5D2DA 4DX0A 3CQGA 5EXAA 1S2XA 4GNTA 4W8JA 3LW1A 5HF3A 2C1NA 3U9XA 4ARYA 5LVZA 3M50A 3IQUA 3M51A 4D8MA 5J31A 3T0MA 3SMNA 4DHUA 4J6SA 3P1RA 3EFZA 4DHOA 5D3FA 4N7YA 3SMMA 1YZ5A 4N7GA 3O8IA 4FL5A 2O8PA 2BQ0A 3UX0A 4DNKA 2C23A 4QX2A 4DHSA 1O9EA 3CU8A 1W99A 5D3EA 4E2EA 3SPRA 4WRQA 4DHPA 3P1QA 4QX0A 1A38A 2WH0A 3P1NA 4ZQ0A 4DHMA 4DHTA 1O9DA 4DAUA 1QJAA 2V7DA 4N84A 1I5PA 3NKXA 3I4RA 3P1PA 3MHRA 3UBWA 4ZDRA 4IEAA 4DHNA 4Y3BA 1O9FA 3EB7A 4QLIA 4F7RA 1JI6A 4ARXA 4HKCA 5LU2A 5BTVA 1A4OA 2BR9A 1IB1A 4DHQA 2BTPA 5EWZA 2C9KA 3P1SA 3UZDA 1URJA 2O98A 1YWTA 3RDHA 1DLCA 4Y32A 3IQJA 3CQCA 2C1JA 3IQVA 4FJ3A 4MOAA 2B05A 2C74A 4IHLA 3SP5A 5IQPA 1O9CA 1QJBA 3SMLA 3T0LA 3UALA 5LHOA 4QX1A 4QX3A 1A37A 3E6YA 1CIYA 4DATA 4JDDA 2C63A 4JC3A 5LX2A 4Y5IA 4DHRA 4O46A 3X0UA 2O02A 2NPMA 4FR3A 4BG6A 5LU1A 5F74A 3SMOA 3ZHEB 3P1OA 3SMKA 5BY9A 3AXYC
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5D2D A;  4DX0 A;  5EXA A;  4GNT A;  3LW1 A;  5HF3 A;  2C1N A;  3U9X A;  5LVZ A;  3M50 A;  3IQU A;  3M51 A;  5J31 A;  3T0M A;  3SMN A;  4DHU A;  4J6S A;  3P1R A;  3EFZ A;  4DHO A;  5D3F A;  4N7Y A;  3SMM A;  1YZ5 A;  4N7G A;  3O8I A;  4FL5 A;  2O8P A;  2BQ0 A;  3UX0 A;  4DNK A;  2C23 A;  4DHS A;  1O9E A;  3CU8 A;  5D3E A;  4E2E A;  3SPR A;  4WRQ A;  4DHP A;  3P1Q A;  1A38 A;  2WH0 A;  3P1N A;  4ZQ0 A;  4DHM A;  4DHT A;  1O9D A;  4DAU A;  1QJA A;  2V7D A;  4N84 A;  3NKX A;  3P1P A;  3MHR A;  3UBW A;  4ZDR A;  4IEA A;  4DHN A;  4Y3B A;  1O9F A;  4QLI A;  4F7R A;  4HKC A;  5LU2 A;  5BTV A;  1A4O A;  2BR9 A;  1IB1 A;  4DHQ A;  2BTP A;  5EWZ A;  3P1S A;  3UZD A;  2O98 A;  1YWT A;  3RDH A;  4Y32 A;  3IQJ A;  2C1J A;  3IQV A;  4FJ3 A;  2B05 A;  2C74 A;  4IHL A;  3SP5 A;  5IQP A;  1O9C A;  3SML A;  1QJB A;  3T0L A;  3UAL A;  5LHO A;  1A37 A;  3E6Y A;  4DAT A;  4JDD A;  2C63 A;  4JC3 A;  5LX2 A;  4Y5I A;  4DHR A;  4O46 A;  2O02 A;  2NPM A;  4FR3 A;  4BG6 A;  5LU1 A;  5F74 A;  3SMO A;  3P1O A;  3SMK A;  5BY9 A;  3AXY C; 
#chains in the Genus database with same CATH topology
 5D2D A;  4DX0 A;  3CQG A;  5EXA A;  1S2X A;  4GNT A;  4W8J A;  3LW1 A;  5HF3 A;  2C1N A;  3U9X A;  4ARY A;  5LVZ A;  3M50 A;  3IQU A;  3M51 A;  4D8M A;  5J31 A;  3T0M A;  3SMN A;  4DHU A;  4J6S A;  3P1R A;  3EFZ A;  4DHO A;  5D3F A;  4N7Y A;  3SMM A;  1YZ5 A;  4N7G A;  3O8I A;  4FL5 A;  2O8P A;  2BQ0 A;  3UX0 A;  4DNK A;  2C23 A;  4QX2 A;  4DHS A;  1O9E A;  3CU8 A;  1W99 A;  5D3E A;  4E2E A;  3SPR A;  4WRQ A;  4DHP A;  3P1Q A;  4QX0 A;  1A38 A;  2WH0 A;  3P1N A;  4ZQ0 A;  4DHM A;  4DHT A;  1O9D A;  4DAU A;  1QJA A;  2V7D A;  4N84 A;  1I5P A;  3NKX A;  3I4R A;  3P1P A;  3MHR A;  3UBW A;  4ZDR A;  4IEA A;  4DHN A;  4Y3B A;  1O9F A;  3EB7 A;  4QLI A;  4F7R A;  1JI6 A;  4ARX A;  4HKC A;  5LU2 A;  5BTV A;  1A4O A;  2BR9 A;  1IB1 A;  4DHQ A;  2BTP A;  5EWZ A;  2C9K A;  3P1S A;  3UZD A;  1URJ A;  2O98 A;  1YWT A;  3RDH A;  1DLC A;  4Y32 A;  3IQJ A;  3CQC A;  2C1J A;  3IQV A;  4FJ3 A;  4MOA A;  2B05 A;  2C74 A;  4IHL A;  3SP5 A;  5IQP A;  1O9C A;  1QJB A;  3SML A;  3T0L A;  3UAL A;  5LHO A;  4QX1 A;  4QX3 A;  1A37 A;  3E6Y A;  1CIY A;  4DAT A;  4JDD A;  2C63 A;  4JC3 A;  5LX2 A;  4Y5I A;  4DHR A;  4O46 A;  3X0U A;  2O02 A;  2NPM A;  4FR3 A;  4BG6 A;  5LU1 A;  5F74 A;  3SMO A;  3ZHE B;  3P1O A;  3SMK A;  5BY9 A;  3AXY C; 
#chains in the Genus database with same CATH homology
 5D2D A;  4DX0 A;  5EXA A;  4GNT A;  3LW1 A;  5HF3 A;  2C1N A;  3U9X A;  5LVZ A;  3M50 A;  3IQU A;  3M51 A;  5J31 A;  3T0M A;  3SMN A;  4DHU A;  4J6S A;  3P1R A;  3EFZ A;  4DHO A;  5D3F A;  4N7Y A;  3SMM A;  1YZ5 A;  4N7G A;  3O8I A;  4FL5 A;  2O8P A;  2BQ0 A;  3UX0 A;  4DNK A;  2C23 A;  4DHS A;  1O9E A;  3CU8 A;  5D3E A;  4E2E A;  3SPR A;  4WRQ A;  4DHP A;  3P1Q A;  1A38 A;  2WH0 A;  3P1N A;  4ZQ0 A;  4DHM A;  4DHT A;  1O9D A;  4DAU A;  1QJA A;  2V7D A;  4N84 A;  3NKX A;  3P1P A;  3MHR A;  3UBW A;  4ZDR A;  4IEA A;  4DHN A;  4Y3B A;  1O9F A;  4QLI A;  4F7R A;  4HKC A;  5LU2 A;  5BTV A;  1A4O A;  2BR9 A;  1IB1 A;  4DHQ A;  2BTP A;  5EWZ A;  3P1S A;  3UZD A;  2O98 A;  1YWT A;  3RDH A;  4Y32 A;  3IQJ A;  2C1J A;  3IQV A;  4FJ3 A;  2B05 A;  2C74 A;  4IHL A;  3SP5 A;  5IQP A;  1O9C A;  3SML A;  1QJB A;  3T0L A;  3UAL A;  5LHO A;  1A37 A;  3E6Y A;  4DAT A;  4JDD A;  2C63 A;  4JC3 A;  5LX2 A;  4Y5I A;  4DHR A;  4O46 A;  2O02 A;  2NPM A;  4FR3 A;  4BG6 A;  5LU1 A;  5F74 A;  3SMO A;  3P1O A;  3SMK A;  5BY9 A;  3AXY C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1O9DA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations