The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
105
|
sequence length |
235
|
structure length |
235
|
Chain Sequence |
MSREENVYMAKLAEQAERYEEMVEYMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEEGRGNEEHVTLIKEYRGKIEAELSKICDGILKLLDSHLVPSSTAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTMVAYKAAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDKACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSD
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
14-3-3 proteins act as intracellular receptors for rice Hd3a florigen
pubmed doi rcsb |
| molecule tags |
Signaling protein/protein binding
|
| source organism |
Oryza sativa japonica group
|
| molecule keywords |
Protein HEADING DATE 3A
|
| total genus |
105
|
| structure length |
235
|
| sequence length |
235
|
| chains with identical sequence |
D, I, J
|
| ec nomenclature | |
| pdb deposition date | 2011-04-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| C | PF00244 | 14-3-3 | 14-3-3 protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Delta-Endotoxin; domain 1 | 14-3-3 domain |
#chains in the Genus database with same CATH superfamily 2BR9 A; 4DHR A; 3NKX A; 5BY9 A; 4QLI A; 3P1N A; 4GNT A; 4Y5I A; 3P1Q A; 3LW1 A; 4DNK A; 3CU8 A; 3P1S A; 4N7G A; 2V7D A; 1O9F A; 1O9E A; 3IQU A; 3T0L A; 4J6S A; 4DHO A; 5D3F A; 2C63 A; 3O8I A; 3M51 A; 3MHR A; 4DHQ A; 4BG6 A; 4FR3 A; 1QJA A; 3SPR A; 1A37 A; 2C1N A; 4DHS A; 3UZD A; 5D3E A; 4IHL A; 4JC3 A; 3SP5 A; 4N84 A; 2NPM A; 5IQP A; 3AXY C; 4DAT A; 5EXA A; 5BTV A; 4DHU A; 4DHP A; 4DX0 A; 4HKC A; 5F74 A; 3P1P A; 3E6Y A; 5LHO A; 3IQJ A; 1IB1 A; 4DHN A; 3P1R A; 5LU2 A; 2C74 A; 3UX0 A; 5D2D A; 2BTP A; 4FJ3 A; 1QJB A; 3IQV A; 2O02 A; 1YZ5 A; 1A38 A; 3SMN A; 1O9C A; 2WH0 A; 4F7R A; 5LX2 A; 4ZQ0 A; 5LVZ A; 4Y3B A; 4DHM A; 4DHT A; 4IEA A; 3UAL A; 3M50 A; 5HF3 A; 3P1O A; 5J31 A; 3T0M A; 5EWZ A; 3EFZ A; 3RDH A; 1YWT A; 4DAU A; 4E2E A; 2B05 A; 2BQ0 A; 3U9X A; 4WRQ A; 2C23 A; 4JDD A; 5LU1 A; 4FL5 A; 2O8P A; 3SMM A; 1O9D A; 2O98 A; 3SML A; 3SMO A; 3UBW A; 4N7Y A; 4Y32 A; 4ZDR A; 2C1J A; 1A4O A; 4O46 A; 3SMK A; #chains in the Genus database with same CATH topology 2BR9 A; 4DHR A; 3NKX A; 5BY9 A; 4QLI A; 3P1N A; 4GNT A; 4Y5I A; 3P1Q A; 1W99 A; 3LW1 A; 4DNK A; 3CU8 A; 4ARX A; 3P1S A; 4N7G A; 2V7D A; 1O9F A; 1O9E A; 3IQU A; 3T0L A; 4J6S A; 4DHO A; 5D3F A; 2C63 A; 3O8I A; 3M51 A; 3CQC A; 3MHR A; 4DHQ A; 4BG6 A; 1I5P A; 4FR3 A; 1QJA A; 3SPR A; 1A37 A; 2C1N A; 4DHS A; 1CIY A; 3UZD A; 3ZHE B; 5D3E A; 4IHL A; 4JC3 A; 3SP5 A; 1JI6 A; 4N84 A; 2NPM A; 5IQP A; 3AXY C; 4DAT A; 5EXA A; 5BTV A; 4DHU A; 2C9K A; 4DHP A; 4DX0 A; 4HKC A; 5F74 A; 3P1P A; 3E6Y A; 5LHO A; 3IQJ A; 1IB1 A; 1DLC A; 4DHN A; 3P1R A; 5LU2 A; 2C74 A; 3UX0 A; 5D2D A; 2BTP A; 4FJ3 A; 1QJB A; 3IQV A; 2O02 A; 1YZ5 A; 1A38 A; 3SMN A; 3CQG A; 4QX2 A; 1O9C A; 4D8M A; 2WH0 A; 4F7R A; 5LX2 A; 4ZQ0 A; 5LVZ A; 4Y3B A; 4DHM A; 1S2X A; 4DHT A; 4IEA A; 3UAL A; 3M50 A; 5HF3 A; 3P1O A; 5J31 A; 4QX3 A; 3T0M A; 5EWZ A; 3EFZ A; 3RDH A; 1YWT A; 4DAU A; 4E2E A; 2B05 A; 3X0U A; 2BQ0 A; 4MOA A; 3U9X A; 4WRQ A; 2C23 A; 4JDD A; 3EB7 A; 5LU1 A; 4FL5 A; 4W8J A; 2O8P A; 3SMM A; 1O9D A; 2O98 A; 3SML A; 4QX0 A; 3SMO A; 3UBW A; 4QX1 A; 4N7Y A; 1URJ A; 4Y32 A; 4ZDR A; 4ARY A; 2C1J A; 3I4R A; 1A4O A; 4O46 A; 3SMK A; #chains in the Genus database with same CATH homology 2BR9 A; 4DHR A; 3NKX A; 5BY9 A; 4QLI A; 3P1N A; 4GNT A; 4Y5I A; 3P1Q A; 3LW1 A; 4DNK A; 3CU8 A; 3P1S A; 4N7G A; 2V7D A; 1O9F A; 1O9E A; 3IQU A; 3T0L A; 4J6S A; 4DHO A; 5D3F A; 2C63 A; 3O8I A; 3M51 A; 3MHR A; 4DHQ A; 4BG6 A; 4FR3 A; 1QJA A; 3SPR A; 1A37 A; 2C1N A; 4DHS A; 3UZD A; 5D3E A; 4IHL A; 4JC3 A; 3SP5 A; 4N84 A; 2NPM A; 5IQP A; 3AXY C; 4DAT A; 5EXA A; 5BTV A; 4DHU A; 4DHP A; 4DX0 A; 4HKC A; 5F74 A; 3P1P A; 3E6Y A; 5LHO A; 3IQJ A; 1IB1 A; 4DHN A; 3P1R A; 5LU2 A; 2C74 A; 3UX0 A; 5D2D A; 2BTP A; 4FJ3 A; 1QJB A; 3IQV A; 2O02 A; 1YZ5 A; 1A38 A; 3SMN A; 1O9C A; 2WH0 A; 4F7R A; 5LX2 A; 4ZQ0 A; 5LVZ A; 4Y3B A; 4DHM A; 4DHT A; 4IEA A; 3UAL A; 3M50 A; 5HF3 A; 3P1O A; 5J31 A; 3T0M A; 5EWZ A; 3EFZ A; 3RDH A; 1YWT A; 4DAU A; 4E2E A; 2B05 A; 2BQ0 A; 3U9X A; 4WRQ A; 2C23 A; 4JDD A; 5LU1 A; 4FL5 A; 2O8P A; 3SMM A; 1O9D A; 2O98 A; 3SML A; 3SMO A; 3UBW A; 4N7Y A; 4Y32 A; 4ZDR A; 2C1J A; 1A4O A; 4O46 A; 3SMK A;
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