1Q7Y | Genus

Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	49
sequence length	154
structure length	154
Chain Sequence	MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 154 atoms

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154 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	Structural Insights Into Peptide Bond Formation pubmed doi rcsb
molecule keywords	23S ribosomal rna
total genus	49
structure length	154
sequence length	154
ec nomenclature
pdb deposition date	2003-08-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
X	PF00327	Ribosomal_L30	Ribosomal protein L30p/L7e

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.15.30	Mainly Alpha	Orthogonal Bundle	3-methyladenine DNA Glycosylase II; Chain A, domain 3	3-methyladenine DNA Glycosylase II; Chain A, domain 3	1q7yX02
3.30.1390.20	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30; Chain: A,	Ribosomal protein L30, ferredoxin-like fold domain	1q7yX01

5JVGW 3CMAW 1YJWW 5DM6W 4IOAW 1VQLW 1QVGV 3CC2W 1VQ4W 3CC4W 2OTLW 4IOCW 4U67W 3CCVW 3CC7W 3I56W 1NJIX 1VQ8W 2ZJQW 1VQPW 1K8AX 2QEXW 1VQNW 1VQ9W 1Q82X 1N8RX 3J7ZZ 1W2BV 3G4SW 3CCRW 4WFAW 3CCEW 4IO9W 1K73X 1VQ6W 3CCQW 2ZJPW 4WFBW 1Q86X 3CPWV 5GAGa 1Q81X 3CCJW 1YITW 1BXYA 5HL7W 3CXCV 1VQKW 3PIOW 3OW2V 3CMEW 1YHQW 2OTJW 3CCMW 3I55W 3CF5W 3PIPW 3CCUW 1VQOW 3G71W 4WCEW 1K9MX 1VQ5W 4WF9W 3G6EW 5DM7W 3CCLW 1M1KX 5GAHa 3CD6W 1KC8X 1M90X 1KD1X 2ZJRW 5JVHW 1VQ7W 3DLLW 1YJNW 1Q7YX 5GAEa 5GADa 3CCSW 4UY8Z 1KQSV 1YJ9W 4WFNW 1QVFV 1VQMW 1S72W 1YIJW 2QA4W 1JJ2V 1YI2W
chains in the Genus database with same CATH superfamily

1R6QC 1MWUA 3CMAW 4BL2A 5JVGW 3O2BA 2WA8A 1YJWW 3O2HA 4YJMA 1CTFA 5DM6W 4IOAW 1VQLW 1QVGV 3CC2W 1MG9A 3G1BA 5GW7A 1VQ4W 3CC4W 2OTLW 4IOCW 4U67W 3W7XA 3CCVW 3CC7W 3I56W 1NJIX 3W7TA 1VQ8W 4CPKA 2ZJQW 1R6OC 1VQPW 3G19A 1K8AX 2QEXW 1VQNW 4YJXA 1VQ9W 1Q82X 1N8RX 3D3IA 3J7ZZ 1W2BV 3G4SW 3CCRW 4WFAW 3CCEW 4IO9W 1K73X 1VQ6W 3CCQW 2ZJPW 4WFBW 1MWTA 1VQQA 4BL3A 1Q86X 3CPWV 5GAGa 1Q81X 4YKAA 3CCJW 1YITW 1BXYA 5HL7W 3CXCV 1VQKW 3PIOW 3OW2V 3O1FA 3GQ0A 3ZG5A 3CMEW 3O2OA 5CA3A 3ZG0A 1YHQW 5M19A 2OTJW 3W7SA 1RQSA 1MWRA 5M18A 1MBVB 3CCMW 3I55W 1MWSA 3CF5W 3PIPW 3CCUW 1VQOW 3G71W 1DD4A 1LZWA 4WCEW 1DD3A 1MBXC 1K9MX 1VQ5W 3W7UA 4WF9W 3G6EW 5DM7W 3DNJA 2WA9A 3CCLW 1M1KX 5GAHa 3CD6W 1KC8X 1MBUC 1M90X 3O1FB 1KD1X 2ZJRW 1RQUA 5JVHW 1RQVA 1VQ7W 3G3PA 3DLLW 2W9RA 4CJNA 1YJNW 1Q7YX 3GQ1A 5GAEa 3ZFZA 5GADa 3CCSW 4C1NA 4DKIA 4UY8Z 1KQSV 3GW1A 5M1AA 1YJ9W 4WFNW 1QVFV 3W7WA 1VQMW 1S72W 1YIJW 2QA4W 1JJ2V 1YI2W
chains in the Genus database with same CATH topology

5JVGW 3CMAW 1YJWW 5DM6W 4IOAW 1VQLW 1QVGV 3CC2W 1VQ4W 3CC4W 2OTLW 4IOCW 4U67W 3CCVW 3CC7W 3I56W 1NJIX 1VQ8W 2ZJQW 1VQPW 1K8AX 2QEXW 1VQNW 1VQ9W 1Q82X 1N8RX 3J7ZZ 1W2BV 3G4SW 3CCRW 4WFAW 3CCEW 4IO9W 1K73X 1VQ6W 3CCQW 2ZJPW 4WFBW 1Q86X 3CPWV 5GAGa 1Q81X 3CCJW 1YITW 1BXYA 5HL7W 3CXCV 1VQKW 3PIOW 3OW2V 3CMEW 1YHQW 2OTJW 3CCMW 3I55W 3CF5W 3PIPW 3CCUW 1VQOW 3G71W 4WCEW 1K9MX 1VQ5W 4WF9W 3G6EW 5DM7W 3CCLW 1M1KX 5GAHa 3CD6W 1KC8X 1M90X 1KD1X 2ZJRW 5JVHW 1VQ7W 3DLLW 1YJNW 1Q7YX 5GAEa 5GADa 3CCSW 4C1NA 4UY8Z 1KQSV 1YJ9W 4WFNW 1QVFV 1VQMW 1S72W 1YIJW 2QA4W 1JJ2V 1YI2W
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5JVG W;  3CMA W;  1YJW W;  5DM6 W;  4IOA W;  1VQL W;  1QVG V;  3CC2 W;  1VQ4 W;  3CC4 W;  2OTL W;  4IOC W;  4U67 W;  3CCV W;  3CC7 W;  3I56 W;  1NJI X;  1VQ8 W;  2ZJQ W;  1VQP W;  1K8A X;  2QEX W;  1VQN W;  1VQ9 W;  1Q82 X;  1N8R X;  3J7Z Z;  1W2B V;  3G4S W;  3CCR W;  4WFA W;  3CCE W;  4IO9 W;  1K73 X;  1VQ6 W;  3CCQ W;  2ZJP W;  4WFB W;  1Q86 X;  3CPW V;  5GAG a;  1Q81 X;  3CCJ W;  1YIT W;  1BXY A;  5HL7 W;  3CXC V;  1VQK W;  3PIO W;  3OW2 V;  3CME W;  1YHQ W;  2OTJ W;  3CCM W;  3I55 W;  3CF5 W;  3PIP W;  3CCU W;  1VQO W;  3G71 W;  4WCE W;  1K9M X;  1VQ5 W;  4WF9 W;  3G6E W;  5DM7 W;  3CCL W;  1M1K X;  5GAH a;  3CD6 W;  1KC8 X;  1M90 X;  1KD1 X;  2ZJR W;  5JVH W;  1VQ7 W;  3DLL W;  1YJN W;  1Q7Y X;  5GAE a;  5GAD a;  3CCS W;  4UY8 Z;  1KQS V;  1YJ9 W;  4WFN W;  1QVF V;  1VQM W;  1S72 W;  1YIJ W;  2QA4 W;  1JJ2 V;  1YI2 W; 
#chains in the Genus database with same CATH topology
 1R6Q C;  1MWU A;  3CMA W;  4BL2 A;  5JVG W;  3O2B A;  2WA8 A;  1YJW W;  3O2H A;  4YJM A;  1CTF A;  5DM6 W;  4IOA W;  1VQL W;  1QVG V;  3CC2 W;  1MG9 A;  3G1B A;  5GW7 A;  1VQ4 W;  3CC4 W;  2OTL W;  4IOC W;  4U67 W;  3W7X A;  3CCV W;  3CC7 W;  3I56 W;  1NJI X;  3W7T A;  1VQ8 W;  4CPK A;  2ZJQ W;  1R6O C;  1VQP W;  3G19 A;  1K8A X;  2QEX W;  1VQN W;  4YJX A;  1VQ9 W;  1Q82 X;  1N8R X;  3D3I A;  3J7Z Z;  1W2B V;  3G4S W;  3CCR W;  4WFA W;  3CCE W;  4IO9 W;  1K73 X;  1VQ6 W;  3CCQ W;  2ZJP W;  4WFB W;  1MWT A;  1VQQ A;  4BL3 A;  1Q86 X;  3CPW V;  5GAG a;  1Q81 X;  4YKA A;  3CCJ W;  1YIT W;  1BXY A;  5HL7 W;  3CXC V;  1VQK W;  3PIO W;  3OW2 V;  3O1F A;  3GQ0 A;  3ZG5 A;  3CME W;  3O2O A;  5CA3 A;  3ZG0 A;  1YHQ W;  5M19 A;  2OTJ W;  3W7S A;  1RQS A;  1MWR A;  5M18 A;  1MBV B;  3CCM W;  3I55 W;  1MWS A;  3CF5 W;  3PIP W;  3CCU W;  1VQO W;  3G71 W;  1DD4 A;  1LZW A;  4WCE W;  1DD3 A;  1MBX C;  1K9M X;  1VQ5 W;  3W7U A;  4WF9 W;  3G6E W;  5DM7 W;  3DNJ A;  2WA9 A;  3CCL W;  1M1K X;  5GAH a;  3CD6 W;  1KC8 X;  1MBU C;  1M90 X;  3O1F B;  1KD1 X;  2ZJR W;  1RQU A;  5JVH W;  1RQV A;  1VQ7 W;  3G3P A;  3DLL W;  2W9R A;  4CJN A;  1YJN W;  1Q7Y X;  3GQ1 A;  5GAE a;  3ZFZ A;  5GAD a;  3CCS W;  4C1N A;  4DKI A;  4UY8 Z;  1KQS V;  3GW1 A;  5M1A A;  1YJ9 W;  4WFN W;  1QVF V;  3W7W A;  1VQM W;  1S72 W;  1YIJ W;  2QA4 W;  1JJ2 V;  1YI2 W; 
#chains in the Genus database with same CATH homology
 5JVG W;  3CMA W;  1YJW W;  5DM6 W;  4IOA W;  1VQL W;  1QVG V;  3CC2 W;  1VQ4 W;  3CC4 W;  2OTL W;  4IOC W;  4U67 W;  3CCV W;  3CC7 W;  3I56 W;  1NJI X;  1VQ8 W;  2ZJQ W;  1VQP W;  1K8A X;  2QEX W;  1VQN W;  1VQ9 W;  1Q82 X;  1N8R X;  3J7Z Z;  1W2B V;  3G4S W;  3CCR W;  4WFA W;  3CCE W;  4IO9 W;  1K73 X;  1VQ6 W;  3CCQ W;  2ZJP W;  4WFB W;  1Q86 X;  3CPW V;  5GAG a;  1Q81 X;  3CCJ W;  1YIT W;  1BXY A;  5HL7 W;  3CXC V;  1VQK W;  3PIO W;  3OW2 V;  3CME W;  1YHQ W;  2OTJ W;  3CCM W;  3I55 W;  3CF5 W;  3PIP W;  3CCU W;  1VQO W;  3G71 W;  4WCE W;  1K9M X;  1VQ5 W;  4WF9 W;  3G6E W;  5DM7 W;  3CCL W;  1M1K X;  5GAH a;  3CD6 W;  1KC8 X;  1M90 X;  1KD1 X;  2ZJR W;  5JVH W;  1VQ7 W;  3DLL W;  1YJN W;  1Q7Y X;  5GAE a;  5GAD a;  3CCS W;  4C1N A;  4UY8 Z;  1KQS V;  1YJ9 W;  4WFN W;  1QVF V;  1VQM W;  1S72 W;  1YIJ W;  2QA4 W;  1JJ2 V;  1YI2 W;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1Q7YX

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations