1Q81X

Crystal structure of minihelix with 3' puromycin bound to a-site of the 50s ribosomal subunit.
Total Genus 51

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR
2040608010012014014012010080604020
01020304050Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYS1 (2-6)TII2 (28-31)TII1 (10-13)AH1 (15-24)AH2 (39-48)S2 (31-35)S4 (115-117)S3 (52-55)TVIII1 (72-75)AH4 (81-86)AH5 (93-102)TII3 (121-124)AH6 (143-153)3H2 (132-134)TIV2 (127-130)TI1 (48-51)S5 (139-140)AH3 (59-69)3H1 (108-110)Updating...
connected with : NaN
molecule tags Ribosome
publication title Structural Insights into Peptide Bond Formation
pubmed doi rcsb
molecule keywords 23S ribosomal rna
total genus 51
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2003-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 1q81X02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 1q81X01
1Q7YX 5GAGa 3CCRW 3J7ZZ 3CCVW 1K73X 1YJ9W 1VQ7W 3CD6W 3CPWV 1YIJW 3PIPW 1KC8X 1W2BV 5JVGW 3CC7W 1YI2W 3CCSW 3CCEW 5JVHW 3CC4W 2ZJRW 1Q81X 5GAHa 2ZJPW 1KQSV 2QEXW 1VQOW 3CC2W 4WFAW 1Q82X 1VQPW 5HL7W 1JJ2V 1K9MX 5GADa 4WFBW 1VQKW 5DM6W 5DM7W 3G4SW 1VQLW 1YHQW 4UY8Z 1VQNW 3G6EW 3CMEW 3CCLW 1BXYA 3CCQW 1YJWW 3CXCV 1N8RX 2QA4W 1M90X 2ZJQW 1NJIX 1KD1X 1VQ4W 4WF9W 1K8AX 1YJNW 3OW2V 1QVFV 1M1KX 4WCEW 2OTJW 3CF5W 3DLLW 1VQ9W 5GAEa 3CMAW 1S72W 3CCJW 1VQ6W 1QVGV 3CCUW 1Q86X 1VQ8W 1VQMW 3CCMW 3G71W 2OTLW 1YITW 3I56W 4IO9W 1VQ5W 4IOCW 3I55W 4U67W 4WFNW 3PIOW 4IOAW
chains in the Genus database with same CATH superfamily
1Q7YX 3W7UA 5GAGa 3CCRW 3W7TA 3J7ZZ 3CCVW 1DD4A 1MBUC 1K73X 1YJ9W 1MWSA 3O2HA 5M18A 1VQ7W 3CD6W 3DNJA 3CPWV 1YIJW 1RQUA 1KC8X 3G19A 3PIPW 1W2BV 5JVGW 3G1BA 3CC7W 1YI2W 5GW7A 3CCSW 3CCEW 5JVHW 3CC4W 2ZJRW 3W7SA 1RQVA 1Q81X 5GAHa 2ZJPW 1KQSV 4CJNA 2QEXW 1VQOW 3CC2W 3GQ0A 4WFAW 2WA8A 1Q82X 1VQPW 5HL7W 1JJ2V 1K9MX 5GADa 4WFBW 1VQKW 1DD3A 5DM6W 5DM7W 2WA9A 3G4SW 1VQLW 1YHQW 4UY8Z 4C1NA 1VQNW 4YJXA 3G6EW 3CMEW 4YKAA 1RQSA 4BL2A 1MG9A 3GW1A 5M19A 3CCLW 1BXYA 3O1FA 3GQ1A 1MBXC 3CCQW 1YJWW 3CXCV 1R6OC 1N8RX 1MWUA 4BL3A 2QA4W 3ZG0A 3W7WA 1M90X 2W9RA 4DKIA 2ZJQW 1NJIX 1KD1X 1MBVB 3O2OA 4YJMA 5M1AA 3O2BA 1VQ4W 4WF9W 1K8AX 1YJNW 1CTFA 3ZFZA 1R6QC 3OW2V 1QVFV 1M1KX 4CPKA 4WCEW 2OTJW 3CF5W 3DLLW 1VQ9W 5GAEa 3CMAW 3G3PA 1S72W 3CCJW 3D3IA 3O1FB 1VQQA 1VQ6W 1QVGV 3CCUW 1Q86X 1VQ8W 1VQMW 3ZG5A 3CCMW 1LZWA 3G71W 2OTLW 1YITW 3I56W 4IO9W 1VQ5W 1MWRA 5CA3A 4IOCW 3W7XA 3I55W 4U67W 4WFNW 3PIOW 1MWTA 4IOAW
chains in the Genus database with same CATH topology
1Q7YX 5GAGa 3CCRW 3J7ZZ 3CCVW 1K73X 1YJ9W 1VQ7W 3CD6W 3CPWV 1YIJW 3PIPW 1KC8X 1W2BV 5JVGW 3CC7W 1YI2W 3CCSW 3CCEW 5JVHW 3CC4W 2ZJRW 1Q81X 5GAHa 2ZJPW 1KQSV 2QEXW 1VQOW 3CC2W 4WFAW 1Q82X 1VQPW 5HL7W 1JJ2V 1K9MX 5GADa 4WFBW 1VQKW 5DM6W 5DM7W 3G4SW 1VQLW 1YHQW 4UY8Z 4C1NA 1VQNW 3G6EW 3CMEW 3CCLW 1BXYA 3CCQW 1YJWW 3CXCV 1N8RX 2QA4W 1M90X 2ZJQW 1NJIX 1KD1X 1VQ4W 4WF9W 1K8AX 1YJNW 3OW2V 1QVFV 1M1KX 4WCEW 2OTJW 3CF5W 3DLLW 1VQ9W 5GAEa 3CMAW 1S72W 3CCJW 1VQ6W 1QVGV 3CCUW 1Q86X 1VQ8W 1VQMW 3CCMW 3G71W 2OTLW 1YITW 3I56W 4IO9W 1VQ5W 4IOCW 3I55W 4U67W 4WFNW 3PIOW 4IOAW
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1Q7Y X;  5GAG a;  3CCR W;  3J7Z Z;  3CCV W;  1K73 X;  1YJ9 W;  1VQ7 W;  3CD6 W;  3CPW V;  1YIJ W;  3PIP W;  1KC8 X;  1W2B V;  5JVG W;  3CC7 W;  1YI2 W;  3CCS W;  3CCE W;  5JVH W;  3CC4 W;  2ZJR W;  1Q81 X;  5GAH a;  2ZJP W;  1KQS V;  2QEX W;  1VQO W;  3CC2 W;  4WFA W;  1Q82 X;  1VQP W;  5HL7 W;  1JJ2 V;  1K9M X;  5GAD a;  4WFB W;  1VQK W;  5DM6 W;  5DM7 W;  3G4S W;  1VQL W;  1YHQ W;  4UY8 Z;  1VQN W;  3G6E W;  3CME W;  3CCL W;  1BXY A;  3CCQ W;  1YJW W;  3CXC V;  1N8R X;  2QA4 W;  1M90 X;  2ZJQ W;  1NJI X;  1KD1 X;  1VQ4 W;  4WF9 W;  1K8A X;  1YJN W;  3OW2 V;  1QVF V;  1M1K X;  4WCE W;  2OTJ W;  3CF5 W;  3DLL W;  1VQ9 W;  5GAE a;  3CMA W;  1S72 W;  3CCJ W;  1VQ6 W;  1QVG V;  3CCU W;  1Q86 X;  1VQ8 W;  1VQM W;  3CCM W;  3G71 W;  2OTL W;  1YIT W;  3I56 W;  4IO9 W;  1VQ5 W;  4IOC W;  3I55 W;  4U67 W;  4WFN W;  3PIO W;  4IOA W; 
#chains in the Genus database with same CATH topology
 1Q7Y X;  3W7U A;  5GAG a;  3CCR W;  3W7T A;  3J7Z Z;  3CCV W;  1DD4 A;  1MBU C;  1K73 X;  1YJ9 W;  1MWS A;  3O2H A;  5M18 A;  1VQ7 W;  3CD6 W;  3DNJ A;  3CPW V;  1YIJ W;  1RQU A;  1KC8 X;  3G19 A;  3PIP W;  1W2B V;  5JVG W;  3G1B A;  3CC7 W;  1YI2 W;  5GW7 A;  3CCS W;  3CCE W;  5JVH W;  3CC4 W;  2ZJR W;  3W7S A;  1RQV A;  1Q81 X;  5GAH a;  2ZJP W;  1KQS V;  4CJN A;  2QEX W;  1VQO W;  3CC2 W;  3GQ0 A;  4WFA W;  2WA8 A;  1Q82 X;  1VQP W;  5HL7 W;  1JJ2 V;  1K9M X;  5GAD a;  4WFB W;  1VQK W;  1DD3 A;  5DM6 W;  5DM7 W;  2WA9 A;  3G4S W;  1VQL W;  1YHQ W;  4UY8 Z;  4C1N A;  1VQN W;  4YJX A;  3G6E W;  3CME W;  4YKA A;  1RQS A;  4BL2 A;  1MG9 A;  3GW1 A;  5M19 A;  3CCL W;  1BXY A;  3O1F A;  3GQ1 A;  1MBX C;  3CCQ W;  1YJW W;  3CXC V;  1R6O C;  1N8R X;  1MWU A;  4BL3 A;  2QA4 W;  3ZG0 A;  3W7W A;  1M90 X;  2W9R A;  4DKI A;  2ZJQ W;  1NJI X;  1KD1 X;  1MBV B;  3O2O A;  4YJM A;  5M1A A;  3O2B A;  1VQ4 W;  4WF9 W;  1K8A X;  1YJN W;  1CTF A;  3ZFZ A;  1R6Q C;  3OW2 V;  1QVF V;  1M1K X;  4CPK A;  4WCE W;  2OTJ W;  3CF5 W;  3DLL W;  1VQ9 W;  5GAE a;  3CMA W;  3G3P A;  1S72 W;  3CCJ W;  3D3I A;  3O1F B;  1VQQ A;  1VQ6 W;  1QVG V;  3CCU W;  1Q86 X;  1VQ8 W;  1VQM W;  3ZG5 A;  3CCM W;  1LZW A;  3G71 W;  2OTL W;  1YIT W;  3I56 W;  4IO9 W;  1VQ5 W;  1MWR A;  5CA3 A;  4IOC W;  3W7X A;  3I55 W;  4U67 W;  4WFN W;  3PIO W;  1MWT A;  4IOA W; 
#chains in the Genus database with same CATH homology
 1Q7Y X;  5GAG a;  3CCR W;  3J7Z Z;  3CCV W;  1K73 X;  1YJ9 W;  1VQ7 W;  3CD6 W;  3CPW V;  1YIJ W;  3PIP W;  1KC8 X;  1W2B V;  5JVG W;  3CC7 W;  1YI2 W;  3CCS W;  3CCE W;  5JVH W;  3CC4 W;  2ZJR W;  1Q81 X;  5GAH a;  2ZJP W;  1KQS V;  2QEX W;  1VQO W;  3CC2 W;  4WFA W;  1Q82 X;  1VQP W;  5HL7 W;  1JJ2 V;  1K9M X;  5GAD a;  4WFB W;  1VQK W;  5DM6 W;  5DM7 W;  3G4S W;  1VQL W;  1YHQ W;  4UY8 Z;  4C1N A;  1VQN W;  3G6E W;  3CME W;  3CCL W;  1BXY A;  3CCQ W;  1YJW W;  3CXC V;  1N8R X;  2QA4 W;  1M90 X;  2ZJQ W;  1NJI X;  1KD1 X;  1VQ4 W;  4WF9 W;  1K8A X;  1YJN W;  3OW2 V;  1QVF V;  1M1K X;  4WCE W;  2OTJ W;  3CF5 W;  3DLL W;  1VQ9 W;  5GAE a;  3CMA W;  1S72 W;  3CCJ W;  1VQ6 W;  1QVG V;  3CCU W;  1Q86 X;  1VQ8 W;  1VQM W;  3CCM W;  3G71 W;  2OTL W;  1YIT W;  3I56 W;  4IO9 W;  1VQ5 W;  4IOC W;  3I55 W;  4U67 W;  4WFN W;  3PIO W;  4IOA W;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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