1Q86X

Crystal structure of cca-phe-cap-biotin bound simultaneously at half occupancy to both the a-site and p-site of the the 50s ribosomal subunit.
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYS1 (2-6)TII2 (28-31)TII1 (10-13)AH1 (15-24)AH2 (39-48)S6 (115-117)S2 (31-35)S3 (52-55)AH3 (59-69)AH6 (143-153)S4 (71-72)S5 (112-113)TI3 (108-111)TVIII1 (72-75)AH4 (81-87)AH5 (93-102)TIV2 (106-109)TI2 (107-110)TII3 (121-124)3H1 (132-134)TIV3 (127-130)TI1 (48-51)S7 (139-140)Updating...
connected with : NaN
molecule tags Ribosome
publication title Structural insights into peptide bond formation.
pubmed doi rcsb
molecule keywords 23S ribosomal rna
total genus 48
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2003-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 1q86X02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 1q86X01
5JVGW 1KQSV 2ZJQW 1YITW 1W2BV 3I56W 4U67W 5GAHa 1QVFV 1NJIX 1VQ9W 3CPWV 2QA4W 3CD6W 4WF9W 3CCVW 3CF5W 3CCSW 3CCJW 3PIOW 3CCUW 1VQMW 3CCRW 4IOCW 1VQPW 1M1KX 1Q86X 1N8RX 3I55W 5DM7W 4WCEW 3CXCV 1BXYA 4IO9W 1VQ4W 3G4SW 1KD1X 3CCEW 1VQ5W 5HL7W 1S72W 3OW2V 1JJ2V 1Q7YX 4IOAW 1YJNW 1Q81X 4WFAW 1VQ8W 1VQ6W 3G71W 3PIPW 1VQLW 3CCMW 1YI2W 4UY8Z 1YHQW 2OTJW 3CC2W 3CCQW 2OTLW 3J7ZZ 1YJ9W 3CCLW 1VQOW 3CMEW 3CC7W 3CC4W 1K9MX 5GAGa 1KC8X 1Q82X 1VQ7W 1M90X 5DM6W 5GAEa 1K73X 1YJWW 2ZJPW 1YIJW 4WFNW 3DLLW 5JVHW 1VQNW 1K8AX 5GADa 3CMAW 1QVGV 2QEXW 1VQKW 3G6EW 2ZJRW 4WFBW
chains in the Genus database with same CATH superfamily
3GQ1A 4DKIA 5JVGW 1CTFA 1KQSV 2ZJQW 1YITW 1R6OC 3O1FA 1W2BV 3I56W 4U67W 5GAHa 3DNJA 4CJNA 1QVFV 1NJIX 1VQ9W 3CPWV 3D3IA 2QA4W 3CD6W 4WF9W 3ZG0A 5M19A 5M1AA 3CCVW 4C1NA 4BL3A 3CF5W 5M18A 3CCSW 3CCJW 3O2HA 3PIOW 2WA8A 3G1BA 3CCUW 1VQMW 3CCRW 4IOCW 1VQPW 1M1KX 1Q86X 1N8RX 4YJXA 3O2OA 1RQVA 3I55W 3W7SA 5DM7W 4WCEW 1MBVB 1DD4A 3CXCV 4YKAA 1BXYA 4IO9W 1VQ4W 3G4SW 1KD1X 2W9RA 3CCEW 1VQ5W 1MWTA 5HL7W 3O2BA 1DD3A 1S72W 3OW2V 3G3PA 1JJ2V 1Q7YX 4IOAW 3G19A 1YJNW 1Q81X 4WFAW 2WA9A 1VQ8W 1MG9A 1VQ6W 3G71W 4YJMA 3PIPW 3GW1A 1VQLW 3CCMW 1YI2W 1MWUA 3ZFZA 4UY8Z 1YHQW 2OTJW 3CC2W 1R6QC 3CCQW 2OTLW 3J7ZZ 1YJ9W 3CCLW 4BL2A 1LZWA 1MWSA 3W7TA 1VQOW 3W7UA 3CMEW 3CC7W 3CC4W 1K9MX 5GAGa 3W7WA 1MBXC 4CPKA 1KC8X 1Q82X 1VQ7W 1M90X 5DM6W 5GAEa 1K73X 3O1FB 1YJWW 2ZJPW 1RQUA 5CA3A 1YIJW 4WFNW 3DLLW 5JVHW 1VQQA 3ZG5A 5GW7A 1RQSA 1VQNW 1K8AX 1MBUC 1MWRA 5GADa 3CMAW 1QVGV 2QEXW 1VQKW 3G6EW 2ZJRW 3W7XA 3GQ0A 4WFBW
chains in the Genus database with same CATH topology
5JVGW 1KQSV 2ZJQW 1YITW 1W2BV 3I56W 4U67W 5GAHa 1QVFV 1NJIX 1VQ9W 3CPWV 2QA4W 3CD6W 4WF9W 3CCVW 4C1NA 3CF5W 3CCSW 3CCJW 3PIOW 3CCUW 1VQMW 3CCRW 4IOCW 1VQPW 1M1KX 1Q86X 1N8RX 3I55W 5DM7W 4WCEW 3CXCV 1BXYA 4IO9W 1VQ4W 3G4SW 1KD1X 3CCEW 1VQ5W 5HL7W 1S72W 3OW2V 1JJ2V 1Q7YX 4IOAW 1YJNW 1Q81X 4WFAW 1VQ8W 1VQ6W 3G71W 3PIPW 1VQLW 3CCMW 1YI2W 4UY8Z 1YHQW 2OTJW 3CC2W 3CCQW 2OTLW 3J7ZZ 1YJ9W 3CCLW 1VQOW 3CMEW 3CC7W 3CC4W 1K9MX 5GAGa 1KC8X 1Q82X 1VQ7W 1M90X 5DM6W 5GAEa 1K73X 1YJWW 2ZJPW 1YIJW 4WFNW 3DLLW 5JVHW 1VQNW 1K8AX 5GADa 3CMAW 1QVGV 2QEXW 1VQKW 3G6EW 2ZJRW 4WFBW
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 5JVG W;  1KQS V;  2ZJQ W;  1YIT W;  1W2B V;  3I56 W;  4U67 W;  5GAH a;  1QVF V;  1NJI X;  1VQ9 W;  3CPW V;  2QA4 W;  3CD6 W;  4WF9 W;  3CCV W;  3CF5 W;  3CCS W;  3CCJ W;  3PIO W;  3CCU W;  1VQM W;  3CCR W;  4IOC W;  1VQP W;  1M1K X;  1Q86 X;  1N8R X;  3I55 W;  5DM7 W;  4WCE W;  3CXC V;  1BXY A;  4IO9 W;  1VQ4 W;  3G4S W;  1KD1 X;  3CCE W;  1VQ5 W;  5HL7 W;  1S72 W;  3OW2 V;  1JJ2 V;  1Q7Y X;  4IOA W;  1YJN W;  1Q81 X;  4WFA W;  1VQ8 W;  1VQ6 W;  3G71 W;  3PIP W;  1VQL W;  3CCM W;  1YI2 W;  4UY8 Z;  1YHQ W;  2OTJ W;  3CC2 W;  3CCQ W;  2OTL W;  3J7Z Z;  1YJ9 W;  3CCL W;  1VQO W;  3CME W;  3CC7 W;  3CC4 W;  1K9M X;  5GAG a;  1KC8 X;  1Q82 X;  1VQ7 W;  1M90 X;  5DM6 W;  5GAE a;  1K73 X;  1YJW W;  2ZJP W;  1YIJ W;  4WFN W;  3DLL W;  5JVH W;  1VQN W;  1K8A X;  5GAD a;  3CMA W;  1QVG V;  2QEX W;  1VQK W;  3G6E W;  2ZJR W;  4WFB W; 
#chains in the Genus database with same CATH topology
 3GQ1 A;  4DKI A;  5JVG W;  1CTF A;  1KQS V;  2ZJQ W;  1YIT W;  1R6O C;  3O1F A;  1W2B V;  3I56 W;  4U67 W;  5GAH a;  3DNJ A;  4CJN A;  1QVF V;  1NJI X;  1VQ9 W;  3CPW V;  3D3I A;  2QA4 W;  3CD6 W;  4WF9 W;  3ZG0 A;  5M19 A;  5M1A A;  3CCV W;  4C1N A;  4BL3 A;  3CF5 W;  5M18 A;  3CCS W;  3CCJ W;  3O2H A;  3PIO W;  2WA8 A;  3G1B A;  3CCU W;  1VQM W;  3CCR W;  4IOC W;  1VQP W;  1M1K X;  1Q86 X;  1N8R X;  4YJX A;  3O2O A;  1RQV A;  3I55 W;  3W7S A;  5DM7 W;  4WCE W;  1MBV B;  1DD4 A;  3CXC V;  4YKA A;  1BXY A;  4IO9 W;  1VQ4 W;  3G4S W;  1KD1 X;  2W9R A;  3CCE W;  1VQ5 W;  1MWT A;  5HL7 W;  3O2B A;  1DD3 A;  1S72 W;  3OW2 V;  3G3P A;  1JJ2 V;  1Q7Y X;  4IOA W;  3G19 A;  1YJN W;  1Q81 X;  4WFA W;  2WA9 A;  1VQ8 W;  1MG9 A;  1VQ6 W;  3G71 W;  4YJM A;  3PIP W;  3GW1 A;  1VQL W;  3CCM W;  1YI2 W;  1MWU A;  3ZFZ A;  4UY8 Z;  1YHQ W;  2OTJ W;  3CC2 W;  1R6Q C;  3CCQ W;  2OTL W;  3J7Z Z;  1YJ9 W;  3CCL W;  4BL2 A;  1LZW A;  1MWS A;  3W7T A;  1VQO W;  3W7U A;  3CME W;  3CC7 W;  3CC4 W;  1K9M X;  5GAG a;  3W7W A;  1MBX C;  4CPK A;  1KC8 X;  1Q82 X;  1VQ7 W;  1M90 X;  5DM6 W;  5GAE a;  1K73 X;  3O1F B;  1YJW W;  2ZJP W;  1RQU A;  5CA3 A;  1YIJ W;  4WFN W;  3DLL W;  5JVH W;  1VQQ A;  3ZG5 A;  5GW7 A;  1RQS A;  1VQN W;  1K8A X;  1MBU C;  1MWR A;  5GAD a;  3CMA W;  1QVG V;  2QEX W;  1VQK W;  3G6E W;  2ZJR W;  3W7X A;  3GQ0 A;  4WFB W; 
#chains in the Genus database with same CATH homology
 5JVG W;  1KQS V;  2ZJQ W;  1YIT W;  1W2B V;  3I56 W;  4U67 W;  5GAH a;  1QVF V;  1NJI X;  1VQ9 W;  3CPW V;  2QA4 W;  3CD6 W;  4WF9 W;  3CCV W;  4C1N A;  3CF5 W;  3CCS W;  3CCJ W;  3PIO W;  3CCU W;  1VQM W;  3CCR W;  4IOC W;  1VQP W;  1M1K X;  1Q86 X;  1N8R X;  3I55 W;  5DM7 W;  4WCE W;  3CXC V;  1BXY A;  4IO9 W;  1VQ4 W;  3G4S W;  1KD1 X;  3CCE W;  1VQ5 W;  5HL7 W;  1S72 W;  3OW2 V;  1JJ2 V;  1Q7Y X;  4IOA W;  1YJN W;  1Q81 X;  4WFA W;  1VQ8 W;  1VQ6 W;  3G71 W;  3PIP W;  1VQL W;  3CCM W;  1YI2 W;  4UY8 Z;  1YHQ W;  2OTJ W;  3CC2 W;  3CCQ W;  2OTL W;  3J7Z Z;  1YJ9 W;  3CCL W;  1VQO W;  3CME W;  3CC7 W;  3CC4 W;  1K9M X;  5GAG a;  1KC8 X;  1Q82 X;  1VQ7 W;  1M90 X;  5DM6 W;  5GAE a;  1K73 X;  1YJW W;  2ZJP W;  1YIJ W;  4WFN W;  3DLL W;  5JVH W;  1VQN W;  1K8A X;  5GAD a;  3CMA W;  1QVG V;  2QEX W;  1VQK W;  3G6E W;  2ZJR W;  4WFB W;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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