1VQN | Genus

Total Genus 47

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	47
sequence length	154
structure length	154
Chain Sequence	MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA. pubmed doi rcsb
molecule keywords	23S ribosomal rna
total genus	47
structure length	154
sequence length	154
ec nomenclature
pdb deposition date	2004-12-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
W	PF00327	Ribosomal_L30	Ribosomal protein L30p/L7e

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.15.30	Mainly Alpha	Orthogonal Bundle	3-methyladenine DNA Glycosylase II; Chain A, domain 3	3-methyladenine DNA Glycosylase II; Chain A, domain 3	1vqnW02
3.30.1390.20	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30; Chain: A,	Ribosomal protein L30, ferredoxin-like fold domain	1vqnW01

1N8RX 3CCJW 3CCQW 2ZJPW 1VQKW 1KQSV 4WFAW 3CCVW 2QEXW 1S72W 1VQ4W 5JVGW 1BXYA 1Q86X 5DM6W 1Q7YX 1Q82X 1YJNW 1VQ5W 3CD6W 1VQLW 3I55W 4IOAW 1W2BV 1VQ8W 4WFNW 3CCSW 1JJ2V 1K9MX 4WFBW 3CC4W 1YI2W 3CCUW 4WCEW 1QVGV 1YJ9W 5JVHW 3PIPW 4U67W 3CMEW 1YITW 3CC7W 3CF5W 3CC2W 5GADa 1VQMW 3J7ZZ 3PIOW 3CCLW 3G4SW 4IOCW 5DM7W 1Q81X 1NJIX 3OW2V 3CCRW 1KC8X 3CCEW 1VQ6W 1VQNW 3G6EW 2QA4W 1VQOW 5GAGa 2OTLW 3I56W 1M1KX 5GAHa 1YIJW 3CPWV 4WF9W 1QVFV 1K8AX 1VQ9W 3G71W 1VQPW 1YHQW 1M90X 1K73X 3DLLW 3CCMW 2ZJRW 5HL7W 2ZJQW 1VQ7W 3CMAW 1KD1X 4IO9W 4UY8Z 3CXCV 1YJWW 2OTJW 5GAEa
chains in the Genus database with same CATH superfamily

3DNJA 1RQSA 1RQUA 1N8RX 5CA3A 3O2HA 3CCJW 3W7TA 3CCQW 2ZJPW 1VQKW 1KQSV 4WFAW 3CCVW 1DD4A 2QEXW 1MBVB 1S72W 1VQ4W 5JVGW 1BXYA 1Q86X 5M19A 1Q7YX 3W7SA 1MWUA 5DM6W 1Q82X 1YJNW 1VQ5W 3CD6W 1VQLW 3I55W 1DD3A 1W2BV 4IOAW 3O1FA 2WA9A 1VQ8W 4WFNW 4CJNA 3CCSW 3O2OA 1JJ2V 1R6QC 1K9MX 1MWTA 4WFBW 4YKAA 3CC4W 1YI2W 3CCUW 4WCEW 1QVGV 1YJ9W 5JVHW 3W7WA 3PIPW 4U67W 3CMEW 1YITW 3CC7W 3G1BA 3ZG5A 3CF5W 3CC2W 5GADa 1VQMW 3J7ZZ 3PIOW 3CCLW 3G4SW 4IOCW 5DM7W 1Q81X 1MBXC 1VQQA 2W9RA 5M18A 1NJIX 3OW2V 4CPKA 3CCRW 1KC8X 3CCEW 1VQ6W 1VQNW 3G6EW 3G3PA 2QA4W 5M1AA 1VQOW 5GAGa 2OTLW 1MBUC 3W7XA 4BL3A 4BL2A 3I56W 1M1KX 4YJXA 1MWSA 5GAHa 1MWRA 1YIJW 1R6OC 3D3IA 3CPWV 4WF9W 1QVFV 1K8AX 3W7UA 1RQVA 1VQ9W 4C1NA 3G71W 1CTFA 3GQ0A 1VQPW 1YHQW 1M90X 1K73X 3DLLW 3CCMW 5GW7A 2ZJRW 1MG9A 4DKIA 5HL7W 3O1FB 2ZJQW 1VQ7W 3G19A 3CMAW 1KD1X 4YJMA 3ZG0A 3GW1A 4IO9W 2WA8A 4UY8Z 3O2BA 3GQ1A 3CXCV 1YJWW 2OTJW 3ZFZA 1LZWA 5GAEa
chains in the Genus database with same CATH topology

1N8RX 3CCJW 3CCQW 2ZJPW 1VQKW 1KQSV 4WFAW 3CCVW 2QEXW 1S72W 1VQ4W 5JVGW 1BXYA 1Q86X 5DM6W 1Q7YX 1Q82X 1YJNW 1VQ5W 3CD6W 1VQLW 3I55W 4IOAW 1W2BV 1VQ8W 4WFNW 3CCSW 1JJ2V 1K9MX 4WFBW 3CC4W 1YI2W 3CCUW 4WCEW 1QVGV 1YJ9W 5JVHW 3PIPW 4U67W 3CMEW 1YITW 3CC7W 3CF5W 3CC2W 5GADa 1VQMW 3J7ZZ 3PIOW 3CCLW 3G4SW 4IOCW 5DM7W 1Q81X 1NJIX 3OW2V 3CCRW 1KC8X 3CCEW 1VQ6W 1VQNW 3G6EW 2QA4W 1VQOW 5GAGa 2OTLW 3I56W 1M1KX 5GAHa 1YIJW 3CPWV 4WF9W 1QVFV 1K8AX 1VQ9W 4C1NA 3G71W 1VQPW 1YHQW 1M90X 1K73X 3DLLW 3CCMW 2ZJRW 5HL7W 2ZJQW 1VQ7W 3CMAW 1KD1X 4IO9W 4UY8Z 3CXCV 1YJWW 2OTJW 5GAEa
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1N8R X;  3CCJ W;  3CCQ W;  2ZJP W;  1VQK W;  1KQS V;  4WFA W;  3CCV W;  2QEX W;  1S72 W;  1VQ4 W;  5JVG W;  1BXY A;  1Q86 X;  5DM6 W;  1Q7Y X;  1Q82 X;  1YJN W;  1VQ5 W;  3CD6 W;  1VQL W;  3I55 W;  4IOA W;  1W2B V;  1VQ8 W;  4WFN W;  3CCS W;  1JJ2 V;  1K9M X;  4WFB W;  3CC4 W;  1YI2 W;  3CCU W;  4WCE W;  1QVG V;  1YJ9 W;  5JVH W;  3PIP W;  4U67 W;  3CME W;  1YIT W;  3CC7 W;  3CF5 W;  3CC2 W;  5GAD a;  1VQM W;  3J7Z Z;  3PIO W;  3CCL W;  3G4S W;  4IOC W;  5DM7 W;  1Q81 X;  1NJI X;  3OW2 V;  3CCR W;  1KC8 X;  3CCE W;  1VQ6 W;  1VQN W;  3G6E W;  2QA4 W;  1VQO W;  5GAG a;  2OTL W;  3I56 W;  1M1K X;  5GAH a;  1YIJ W;  3CPW V;  4WF9 W;  1QVF V;  1K8A X;  1VQ9 W;  3G71 W;  1VQP W;  1YHQ W;  1M90 X;  1K73 X;  3DLL W;  3CCM W;  2ZJR W;  5HL7 W;  2ZJQ W;  1VQ7 W;  3CMA W;  1KD1 X;  4IO9 W;  4UY8 Z;  3CXC V;  1YJW W;  2OTJ W;  5GAE a; 
#chains in the Genus database with same CATH topology
 3DNJ A;  1RQS A;  1RQU A;  1N8R X;  5CA3 A;  3O2H A;  3CCJ W;  3W7T A;  3CCQ W;  2ZJP W;  1VQK W;  1KQS V;  4WFA W;  3CCV W;  1DD4 A;  2QEX W;  1MBV B;  1S72 W;  1VQ4 W;  5JVG W;  1BXY A;  1Q86 X;  5M19 A;  1Q7Y X;  3W7S A;  1MWU A;  5DM6 W;  1Q82 X;  1YJN W;  1VQ5 W;  3CD6 W;  1VQL W;  3I55 W;  1DD3 A;  1W2B V;  4IOA W;  3O1F A;  2WA9 A;  1VQ8 W;  4WFN W;  4CJN A;  3CCS W;  3O2O A;  1JJ2 V;  1R6Q C;  1K9M X;  1MWT A;  4WFB W;  4YKA A;  3CC4 W;  1YI2 W;  3CCU W;  4WCE W;  1QVG V;  1YJ9 W;  5JVH W;  3W7W A;  3PIP W;  4U67 W;  3CME W;  1YIT W;  3CC7 W;  3G1B A;  3ZG5 A;  3CF5 W;  3CC2 W;  5GAD a;  1VQM W;  3J7Z Z;  3PIO W;  3CCL W;  3G4S W;  4IOC W;  5DM7 W;  1Q81 X;  1MBX C;  1VQQ A;  2W9R A;  5M18 A;  1NJI X;  3OW2 V;  4CPK A;  3CCR W;  1KC8 X;  3CCE W;  1VQ6 W;  1VQN W;  3G6E W;  3G3P A;  2QA4 W;  5M1A A;  1VQO W;  5GAG a;  2OTL W;  1MBU C;  3W7X A;  4BL3 A;  4BL2 A;  3I56 W;  1M1K X;  4YJX A;  1MWS A;  5GAH a;  1MWR A;  1YIJ W;  1R6O C;  3D3I A;  3CPW V;  4WF9 W;  1QVF V;  1K8A X;  3W7U A;  1RQV A;  1VQ9 W;  4C1N A;  3G71 W;  1CTF A;  3GQ0 A;  1VQP W;  1YHQ W;  1M90 X;  1K73 X;  3DLL W;  3CCM W;  5GW7 A;  2ZJR W;  1MG9 A;  4DKI A;  5HL7 W;  3O1F B;  2ZJQ W;  1VQ7 W;  3G19 A;  3CMA W;  1KD1 X;  4YJM A;  3ZG0 A;  3GW1 A;  4IO9 W;  2WA8 A;  4UY8 Z;  3O2B A;  3GQ1 A;  3CXC V;  1YJW W;  2OTJ W;  3ZFZ A;  1LZW A;  5GAE a; 
#chains in the Genus database with same CATH homology
 1N8R X;  3CCJ W;  3CCQ W;  2ZJP W;  1VQK W;  1KQS V;  4WFA W;  3CCV W;  2QEX W;  1S72 W;  1VQ4 W;  5JVG W;  1BXY A;  1Q86 X;  5DM6 W;  1Q7Y X;  1Q82 X;  1YJN W;  1VQ5 W;  3CD6 W;  1VQL W;  3I55 W;  4IOA W;  1W2B V;  1VQ8 W;  4WFN W;  3CCS W;  1JJ2 V;  1K9M X;  4WFB W;  3CC4 W;  1YI2 W;  3CCU W;  4WCE W;  1QVG V;  1YJ9 W;  5JVH W;  3PIP W;  4U67 W;  3CME W;  1YIT W;  3CC7 W;  3CF5 W;  3CC2 W;  5GAD a;  1VQM W;  3J7Z Z;  3PIO W;  3CCL W;  3G4S W;  4IOC W;  5DM7 W;  1Q81 X;  1NJI X;  3OW2 V;  3CCR W;  1KC8 X;  3CCE W;  1VQ6 W;  1VQN W;  3G6E W;  2QA4 W;  1VQO W;  5GAG a;  2OTL W;  3I56 W;  1M1K X;  5GAH a;  1YIJ W;  3CPW V;  4WF9 W;  1QVF V;  1K8A X;  1VQ9 W;  4C1N A;  3G71 W;  1VQP W;  1YHQ W;  1M90 X;  1K73 X;  3DLL W;  3CCM W;  2ZJR W;  5HL7 W;  2ZJQ W;  1VQ7 W;  3CMA W;  1KD1 X;  4IO9 W;  4UY8 Z;  3CXC V;  1YJW W;  2OTJ W;  5GAE a;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1VQNW

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations