1YJN | Genus

Total Genus 45

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	45
sequence length	154
structure length	154
Chain Sequence	MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance. pubmed doi rcsb
molecule keywords	23S Ribosomal RNA
total genus	45
structure length	154
sequence length	154
ec nomenclature
pdb deposition date	2005-01-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
W	PF00327	Ribosomal_L30	Ribosomal protein L30p/L7e

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.15.30	Mainly Alpha	Orthogonal Bundle	3-methyladenine DNA Glycosylase II; Chain A, domain 3	3-methyladenine DNA Glycosylase II; Chain A, domain 3	1yjnW02
3.30.1390.20	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30; Chain: A,	Ribosomal protein L30, ferredoxin-like fold domain	1yjnW01

1K73X 5JVGW 3CCSW 1YIJW 1K8AX 3CC2W 1KQSV 3G6EW 3CCQW 3I56W 1VQ7W 1KC8X 3G4SW 5HL7W 5GAEa 3PIOW 3CCUW 1VQKW 3CPWV 3I55W 4WFAW 1JJ2V 1YJ9W 1YJWW 1N8RX 3CCJW 1VQLW 1VQNW 3CD6W 3CMAW 1VQPW 5GADa 1NJIX 1YHQW 2OTLW 2ZJQW 1VQ4W 1VQMW 3CC4W 3CCVW 3DLLW 3CCEW 3CMEW 1VQ6W 3CXCV 1Q7YX 1Q81X 1K9MX 1VQ8W 1VQ5W 4IOAW 1YITW 3CCRW 3OW2V 4IOCW 2OTJW 4IO9W 4UY8Z 4WFBW 4WCEW 1W2BV 1Q82X 2ZJPW 5GAGa 3CC7W 4WF9W 2QEXW 1QVGV 1BXYA 1Q86X 3PIPW 1YI2W 3CCMW 3CCLW 1M1KX 2ZJRW 3G71W 1VQOW 1M90X 1KD1X 5DM6W 5GAHa 3CF5W 4WFNW 1VQ9W 2QA4W 1S72W 3J7ZZ 4U67W 5JVHW 1YJNW 5DM7W 1QVFV
chains in the Genus database with same CATH superfamily

1K73X 5JVGW 3CCSW 1YIJW 1K8AX 3O1FA 4YJXA 3CC2W 1KQSV 1RQUA 3G6EW 3CCQW 5M1AA 3I56W 3GQ1A 3W7UA 1VQ7W 1KC8X 3D3IA 3ZG0A 3G4SW 5HL7W 5GAEa 3PIOW 5CA3A 3CCUW 1VQKW 3CPWV 3I55W 4DKIA 4WFAW 3O2HA 3DNJA 1JJ2V 1YJ9W 1YJWW 1LZWA 1N8RX 5M18A 1MWSA 3CCJW 1VQLW 1MWTA 3G19A 3GW1A 1VQNW 3CD6W 3CMAW 1VQPW 5GADa 1NJIX 3O2BA 1MWRA 2WA9A 3W7WA 1DD4A 4CPKA 2WA8A 1YHQW 3ZFZA 4C1NA 2OTLW 1VQQA 2ZJQW 1VQ4W 1VQMW 3CC4W 3CCVW 3DLLW 5GW7A 3O1FB 1R6QC 3CCEW 3CMEW 1VQ6W 1MBVB 4YJMA 3CXCV 1Q7YX 1MBXC 1MWUA 1R6OC 1Q81X 1K9MX 4CJNA 1MG9A 4BL3A 1VQ8W 1VQ5W 4IOAW 1YITW 3CCRW 3OW2V 3W7TA 4IOCW 3G1BA 2OTJW 4IO9W 4BL2A 4UY8Z 4WFBW 4WCEW 3O2OA 1W2BV 1Q82X 2ZJPW 5M19A 1RQVA 5GAGa 3CC7W 4WF9W 2QEXW 1DD3A 1QVGV 1BXYA 1Q86X 3PIPW 1YI2W 3CCMW 3CCLW 1M1KX 2ZJRW 3G71W 1VQOW 1M90X 3GQ0A 2W9RA 1KD1X 5DM6W 3ZG5A 3W7XA 5GAHa 3CF5W 4WFNW 1VQ9W 1MBUC 3W7SA 2QA4W 4YKAA 1CTFA 1RQSA 1S72W 3J7ZZ 4U67W 5JVHW 1YJNW 5DM7W 3G3PA 1QVFV
chains in the Genus database with same CATH topology

1K73X 5JVGW 3CCSW 1YIJW 1K8AX 3CC2W 1KQSV 3G6EW 3CCQW 3I56W 1VQ7W 1KC8X 3G4SW 5HL7W 5GAEa 3PIOW 3CCUW 1VQKW 3CPWV 3I55W 4WFAW 1JJ2V 1YJ9W 1YJWW 1N8RX 3CCJW 1VQLW 1VQNW 3CD6W 3CMAW 1VQPW 5GADa 1NJIX 1YHQW 4C1NA 2OTLW 2ZJQW 1VQ4W 1VQMW 3CC4W 3CCVW 3DLLW 3CCEW 3CMEW 1VQ6W 3CXCV 1Q7YX 1Q81X 1K9MX 1VQ8W 1VQ5W 4IOAW 1YITW 3CCRW 3OW2V 4IOCW 2OTJW 4IO9W 4UY8Z 4WFBW 4WCEW 1W2BV 1Q82X 2ZJPW 5GAGa 3CC7W 4WF9W 2QEXW 1QVGV 1BXYA 1Q86X 3PIPW 1YI2W 3CCMW 3CCLW 1M1KX 2ZJRW 3G71W 1VQOW 1M90X 1KD1X 5DM6W 5GAHa 3CF5W 4WFNW 1VQ9W 2QA4W 1S72W 3J7ZZ 4U67W 5JVHW 1YJNW 5DM7W 1QVFV
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1K73 X;  5JVG W;  3CCS W;  1YIJ W;  1K8A X;  3CC2 W;  1KQS V;  3G6E W;  3CCQ W;  3I56 W;  1VQ7 W;  1KC8 X;  3G4S W;  5HL7 W;  5GAE a;  3PIO W;  3CCU W;  1VQK W;  3CPW V;  3I55 W;  4WFA W;  1JJ2 V;  1YJ9 W;  1YJW W;  1N8R X;  3CCJ W;  1VQL W;  1VQN W;  3CD6 W;  3CMA W;  1VQP W;  5GAD a;  1NJI X;  1YHQ W;  2OTL W;  2ZJQ W;  1VQ4 W;  1VQM W;  3CC4 W;  3CCV W;  3DLL W;  3CCE W;  3CME W;  1VQ6 W;  3CXC V;  1Q7Y X;  1Q81 X;  1K9M X;  1VQ8 W;  1VQ5 W;  4IOA W;  1YIT W;  3CCR W;  3OW2 V;  4IOC W;  2OTJ W;  4IO9 W;  4UY8 Z;  4WFB W;  4WCE W;  1W2B V;  1Q82 X;  2ZJP W;  5GAG a;  3CC7 W;  4WF9 W;  2QEX W;  1QVG V;  1BXY A;  1Q86 X;  3PIP W;  1YI2 W;  3CCM W;  3CCL W;  1M1K X;  2ZJR W;  3G71 W;  1VQO W;  1M90 X;  1KD1 X;  5DM6 W;  5GAH a;  3CF5 W;  4WFN W;  1VQ9 W;  2QA4 W;  1S72 W;  3J7Z Z;  4U67 W;  5JVH W;  1YJN W;  5DM7 W;  1QVF V; 
#chains in the Genus database with same CATH topology
 1K73 X;  5JVG W;  3CCS W;  1YIJ W;  1K8A X;  3O1F A;  4YJX A;  3CC2 W;  1KQS V;  1RQU A;  3G6E W;  3CCQ W;  5M1A A;  3I56 W;  3GQ1 A;  3W7U A;  1VQ7 W;  1KC8 X;  3D3I A;  3ZG0 A;  3G4S W;  5HL7 W;  5GAE a;  3PIO W;  5CA3 A;  3CCU W;  1VQK W;  3CPW V;  3I55 W;  4DKI A;  4WFA W;  3O2H A;  3DNJ A;  1JJ2 V;  1YJ9 W;  1YJW W;  1LZW A;  1N8R X;  5M18 A;  1MWS A;  3CCJ W;  1VQL W;  1MWT A;  3G19 A;  3GW1 A;  1VQN W;  3CD6 W;  3CMA W;  1VQP W;  5GAD a;  1NJI X;  3O2B A;  1MWR A;  2WA9 A;  3W7W A;  1DD4 A;  4CPK A;  2WA8 A;  1YHQ W;  3ZFZ A;  4C1N A;  2OTL W;  1VQQ A;  2ZJQ W;  1VQ4 W;  1VQM W;  3CC4 W;  3CCV W;  3DLL W;  5GW7 A;  3O1F B;  1R6Q C;  3CCE W;  3CME W;  1VQ6 W;  1MBV B;  4YJM A;  3CXC V;  1Q7Y X;  1MBX C;  1MWU A;  1R6O C;  1Q81 X;  1K9M X;  4CJN A;  1MG9 A;  4BL3 A;  1VQ8 W;  1VQ5 W;  4IOA W;  1YIT W;  3CCR W;  3OW2 V;  3W7T A;  4IOC W;  3G1B A;  2OTJ W;  4IO9 W;  4BL2 A;  4UY8 Z;  4WFB W;  4WCE W;  3O2O A;  1W2B V;  1Q82 X;  2ZJP W;  5M19 A;  1RQV A;  5GAG a;  3CC7 W;  4WF9 W;  2QEX W;  1DD3 A;  1QVG V;  1BXY A;  1Q86 X;  3PIP W;  1YI2 W;  3CCM W;  3CCL W;  1M1K X;  2ZJR W;  3G71 W;  1VQO W;  1M90 X;  3GQ0 A;  2W9R A;  1KD1 X;  5DM6 W;  3ZG5 A;  3W7X A;  5GAH a;  3CF5 W;  4WFN W;  1VQ9 W;  1MBU C;  3W7S A;  2QA4 W;  4YKA A;  1CTF A;  1RQS A;  1S72 W;  3J7Z Z;  4U67 W;  5JVH W;  1YJN W;  5DM7 W;  3G3P A;  1QVF V; 
#chains in the Genus database with same CATH homology
 1K73 X;  5JVG W;  3CCS W;  1YIJ W;  1K8A X;  3CC2 W;  1KQS V;  3G6E W;  3CCQ W;  3I56 W;  1VQ7 W;  1KC8 X;  3G4S W;  5HL7 W;  5GAE a;  3PIO W;  3CCU W;  1VQK W;  3CPW V;  3I55 W;  4WFA W;  1JJ2 V;  1YJ9 W;  1YJW W;  1N8R X;  3CCJ W;  1VQL W;  1VQN W;  3CD6 W;  3CMA W;  1VQP W;  5GAD a;  1NJI X;  1YHQ W;  4C1N A;  2OTL W;  2ZJQ W;  1VQ4 W;  1VQM W;  3CC4 W;  3CCV W;  3DLL W;  3CCE W;  3CME W;  1VQ6 W;  3CXC V;  1Q7Y X;  1Q81 X;  1K9M X;  1VQ8 W;  1VQ5 W;  4IOA W;  1YIT W;  3CCR W;  3OW2 V;  4IOC W;  2OTJ W;  4IO9 W;  4UY8 Z;  4WFB W;  4WCE W;  1W2B V;  1Q82 X;  2ZJP W;  5GAG a;  3CC7 W;  4WF9 W;  2QEX W;  1QVG V;  1BXY A;  1Q86 X;  3PIP W;  1YI2 W;  3CCM W;  3CCL W;  1M1K X;  2ZJR W;  3G71 W;  1VQO W;  1M90 X;  1KD1 X;  5DM6 W;  5GAH a;  3CF5 W;  4WFN W;  1VQ9 W;  2QA4 W;  1S72 W;  3J7Z Z;  4U67 W;  5JVH W;  1YJN W;  5DM7 W;  1QVF V;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1YJNW

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations