1YJW | Genus

Total Genus 44

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	44
sequence length	154
structure length	154
Chain Sequence	MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome/antibiotic
publication title	Structures of Mlsbk Antibiotics Bound to Mutated Large Ribosomal Subunits Provide a Structural Explanation for Resistance. pubmed doi rcsb
molecule keywords	23S RIBOSOMAL RNA
total genus	44
structure length	154
sequence length	154
ec nomenclature
pdb deposition date	2005-01-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
W	PF00327	Ribosomal_L30	Ribosomal protein L30p/L7e

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.15.30	Mainly Alpha	Orthogonal Bundle	3-methyladenine DNA Glycosylase II; Chain A, domain 3	3-methyladenine DNA Glycosylase II; Chain A, domain 3	1yjwW02
3.30.1390.20	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30; Chain: A,	Ribosomal protein L30, ferredoxin-like fold domain	1yjwW01

5GAHa 1YIJW 3CC2W 1VQ5W 2QA4W 3CCSW 3CCRW 1YITW 3CCEW 1Q82X 3OW2V 1Q86X 1VQPW 1VQNW 1M1KX 1K73X 5DM6W 2ZJPW 3CMEW 4IO9W 3PIPW 1YI2W 5GAEa 1N8RX 4WFBW 1YJNW 1VQOW 2QEXW 3DLLW 1JJ2V 1YJ9W 1KC8X 1QVGV 4IOAW 1M90X 2ZJQW 2ZJRW 3CCJW 3CCMW 3CC7W 5GADa 3PIOW 1K9MX 1VQMW 1Q7YX 5JVHW 3G6EW 3CMAW 1S72W 1W2BV 3CCVW 3CC4W 1YJWW 3CXCV 4WCEW 3I55W 1VQ7W 5DM7W 1QVFV 1K8AX 1VQ9W 3CD6W 5JVGW 1YHQW 1NJIX 3G4SW 1VQLW 1VQ8W 4WFNW 2OTJW 1VQ4W 3CCQW 4WFAW 3I56W 3CF5W 3CCLW 4WF9W 1Q81X 1VQ6W 5GAGa 5HL7W 4U67W 3CPWV 1BXYA 3G71W 4UY8Z 3CCUW 1KD1X 1KQSV 1VQKW 2OTLW 3J7ZZ 4IOCW
chains in the Genus database with same CATH superfamily

5GAHa 3W7XA 1YIJW 3CC2W 1VQ5W 2QA4W 3CCSW 3CCRW 3O1FB 1YITW 4CPKA 4CJNA 3CCEW 1Q82X 3OW2V 1R6QC 1Q86X 1MWTA 1VQPW 1VQNW 1M1KX 3G19A 3O2BA 1K73X 1RQVA 5DM6W 5GW7A 2ZJPW 3O2OA 3CMEW 4IO9W 3GW1A 3PIPW 1YI2W 5GAEa 1VQQA 4BL3A 1N8RX 4C1NA 4WFBW 1YJNW 1VQOW 3ZG0A 2QEXW 3DLLW 3GQ0A 1JJ2V 1LZWA 3G1BA 1YJ9W 1KC8X 1MWSA 3W7TA 1QVGV 3DNJA 4IOAW 1M90X 2ZJQW 2ZJRW 1MBUC 4YJMA 3CCJW 3O1FA 3W7WA 3CCMW 3CC7W 5GADa 3PIOW 1K9MX 1VQMW 1Q7YX 5JVHW 3W7UA 4DKIA 3G6EW 3CMAW 1S72W 1R6OC 2WA8A 1W2BV 3CCVW 3CC4W 1YJWW 1RQUA 1MWRA 3CXCV 3W7SA 4WCEW 4YKAA 3I55W 2WA9A 3G3PA 1VQ7W 5DM7W 1QVFV 1K8AX 1VQ9W 1MBVB 1RQSA 5M1AA 3CD6W 3ZFZA 3ZG5A 5JVGW 1YHQW 1NJIX 3G4SW 1VQLW 3D3IA 1VQ8W 4WFNW 2OTJW 1VQ4W 4BL2A 5M18A 1DD3A 5M19A 3GQ1A 3CCQW 5CA3A 4WFAW 3I56W 2W9RA 3CF5W 3CCLW 4WF9W 1Q81X 1VQ6W 1MG9A 1CTFA 5GAGa 5HL7W 4U67W 3CPWV 1BXYA 3G71W 4YJXA 3CCUW 1MWUA 4UY8Z 1KD1X 1KQSV 1VQKW 2OTLW 1DD4A 3O2HA 1MBXC 3J7ZZ 4IOCW
chains in the Genus database with same CATH topology

5GAHa 1YIJW 3CC2W 1VQ5W 2QA4W 3CCSW 3CCRW 1YITW 3CCEW 1Q82X 3OW2V 1Q86X 1VQPW 1VQNW 1M1KX 1K73X 5DM6W 2ZJPW 3CMEW 4IO9W 3PIPW 1YI2W 5GAEa 1N8RX 4C1NA 4WFBW 1YJNW 1VQOW 2QEXW 3DLLW 1JJ2V 1YJ9W 1KC8X 1QVGV 4IOAW 1M90X 2ZJQW 2ZJRW 3CCJW 3CCMW 3CC7W 5GADa 3PIOW 1K9MX 1VQMW 1Q7YX 5JVHW 3G6EW 3CMAW 1S72W 1W2BV 3CCVW 3CC4W 1YJWW 3CXCV 4WCEW 3I55W 1VQ7W 5DM7W 1QVFV 1K8AX 1VQ9W 3CD6W 5JVGW 1YHQW 1NJIX 3G4SW 1VQLW 1VQ8W 4WFNW 2OTJW 1VQ4W 3CCQW 4WFAW 3I56W 3CF5W 3CCLW 4WF9W 1Q81X 1VQ6W 5GAGa 5HL7W 4U67W 3CPWV 1BXYA 3G71W 4UY8Z 3CCUW 1KD1X 1KQSV 1VQKW 2OTLW 3J7ZZ 4IOCW
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5GAH a;  1YIJ W;  3CC2 W;  1VQ5 W;  2QA4 W;  3CCS W;  3CCR W;  1YIT W;  3CCE W;  1Q82 X;  3OW2 V;  1Q86 X;  1VQP W;  1VQN W;  1M1K X;  1K73 X;  5DM6 W;  2ZJP W;  3CME W;  4IO9 W;  3PIP W;  1YI2 W;  5GAE a;  1N8R X;  4WFB W;  1YJN W;  1VQO W;  2QEX W;  3DLL W;  1JJ2 V;  1YJ9 W;  1KC8 X;  1QVG V;  4IOA W;  1M90 X;  2ZJQ W;  2ZJR W;  3CCJ W;  3CCM W;  3CC7 W;  5GAD a;  3PIO W;  1K9M X;  1VQM W;  1Q7Y X;  5JVH W;  3G6E W;  3CMA W;  1S72 W;  1W2B V;  3CCV W;  3CC4 W;  1YJW W;  3CXC V;  4WCE W;  3I55 W;  1VQ7 W;  5DM7 W;  1QVF V;  1K8A X;  1VQ9 W;  3CD6 W;  5JVG W;  1YHQ W;  1NJI X;  3G4S W;  1VQL W;  1VQ8 W;  4WFN W;  2OTJ W;  1VQ4 W;  3CCQ W;  4WFA W;  3I56 W;  3CF5 W;  3CCL W;  4WF9 W;  1Q81 X;  1VQ6 W;  5GAG a;  5HL7 W;  4U67 W;  3CPW V;  1BXY A;  3G71 W;  4UY8 Z;  3CCU W;  1KD1 X;  1KQS V;  1VQK W;  2OTL W;  3J7Z Z;  4IOC W; 
#chains in the Genus database with same CATH topology
 5GAH a;  3W7X A;  1YIJ W;  3CC2 W;  1VQ5 W;  2QA4 W;  3CCS W;  3CCR W;  3O1F B;  1YIT W;  4CPK A;  4CJN A;  3CCE W;  1Q82 X;  3OW2 V;  1R6Q C;  1Q86 X;  1MWT A;  1VQP W;  1VQN W;  1M1K X;  3G19 A;  3O2B A;  1K73 X;  1RQV A;  5DM6 W;  5GW7 A;  2ZJP W;  3O2O A;  3CME W;  4IO9 W;  3GW1 A;  3PIP W;  1YI2 W;  5GAE a;  1VQQ A;  4BL3 A;  1N8R X;  4C1N A;  4WFB W;  1YJN W;  1VQO W;  3ZG0 A;  2QEX W;  3DLL W;  3GQ0 A;  1JJ2 V;  1LZW A;  3G1B A;  1YJ9 W;  1KC8 X;  1MWS A;  3W7T A;  1QVG V;  3DNJ A;  4IOA W;  1M90 X;  2ZJQ W;  2ZJR W;  1MBU C;  4YJM A;  3CCJ W;  3O1F A;  3W7W A;  3CCM W;  3CC7 W;  5GAD a;  3PIO W;  1K9M X;  1VQM W;  1Q7Y X;  5JVH W;  3W7U A;  4DKI A;  3G6E W;  3CMA W;  1S72 W;  1R6O C;  2WA8 A;  1W2B V;  3CCV W;  3CC4 W;  1YJW W;  1RQU A;  1MWR A;  3CXC V;  3W7S A;  4WCE W;  4YKA A;  3I55 W;  2WA9 A;  3G3P A;  1VQ7 W;  5DM7 W;  1QVF V;  1K8A X;  1VQ9 W;  1MBV B;  1RQS A;  5M1A A;  3CD6 W;  3ZFZ A;  3ZG5 A;  5JVG W;  1YHQ W;  1NJI X;  3G4S W;  1VQL W;  3D3I A;  1VQ8 W;  4WFN W;  2OTJ W;  1VQ4 W;  4BL2 A;  5M18 A;  1DD3 A;  5M19 A;  3GQ1 A;  3CCQ W;  5CA3 A;  4WFA W;  3I56 W;  2W9R A;  3CF5 W;  3CCL W;  4WF9 W;  1Q81 X;  1VQ6 W;  1MG9 A;  1CTF A;  5GAG a;  5HL7 W;  4U67 W;  3CPW V;  1BXY A;  3G71 W;  4YJX A;  3CCU W;  1MWU A;  4UY8 Z;  1KD1 X;  1KQS V;  1VQK W;  2OTL W;  1DD4 A;  3O2H A;  1MBX C;  3J7Z Z;  4IOC W; 
#chains in the Genus database with same CATH homology
 5GAH a;  1YIJ W;  3CC2 W;  1VQ5 W;  2QA4 W;  3CCS W;  3CCR W;  1YIT W;  3CCE W;  1Q82 X;  3OW2 V;  1Q86 X;  1VQP W;  1VQN W;  1M1K X;  1K73 X;  5DM6 W;  2ZJP W;  3CME W;  4IO9 W;  3PIP W;  1YI2 W;  5GAE a;  1N8R X;  4C1N A;  4WFB W;  1YJN W;  1VQO W;  2QEX W;  3DLL W;  1JJ2 V;  1YJ9 W;  1KC8 X;  1QVG V;  4IOA W;  1M90 X;  2ZJQ W;  2ZJR W;  3CCJ W;  3CCM W;  3CC7 W;  5GAD a;  3PIO W;  1K9M X;  1VQM W;  1Q7Y X;  5JVH W;  3G6E W;  3CMA W;  1S72 W;  1W2B V;  3CCV W;  3CC4 W;  1YJW W;  3CXC V;  4WCE W;  3I55 W;  1VQ7 W;  5DM7 W;  1QVF V;  1K8A X;  1VQ9 W;  3CD6 W;  5JVG W;  1YHQ W;  1NJI X;  3G4S W;  1VQL W;  1VQ8 W;  4WFN W;  2OTJ W;  1VQ4 W;  3CCQ W;  4WFA W;  3I56 W;  3CF5 W;  3CCL W;  4WF9 W;  1Q81 X;  1VQ6 W;  5GAG a;  5HL7 W;  4U67 W;  3CPW V;  1BXY A;  3G71 W;  4UY8 Z;  3CCU W;  1KD1 X;  1KQS V;  1VQK W;  2OTL W;  3J7Z Z;  4IOC W;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1YJWW

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations