2CWQA

Crystal structure of conserved protein ttha0727 from thermus thermophilus hb8
Total Genus 42
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
126
structure length
126
Chain Sequence
SGLVPRGSHMDRTHERVLQAMAENLGEGLPRAIPLLAEKAPGLLLEHGRSWTYAMPEKGALDEKTRTLILLGIALATGSEACVKAMAHRAKRLGLSKEALLETLKIARQAQANAVLGHAAPLLEVL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal structure of the conserved protein TTHA0727 from Thermus thermophilus HB8 at 1.9 A resolution: A CMD family member distinct from carboxymuconolactone decarboxylase (CMD) and AhpD
pubmed doi rcsb
molecule tags Structural genomics, unknown function
source organism Thermus thermophilus
molecule keywords hypothetical protein TTHA0727
total genus 42
structure length 126
sequence length 126
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2005-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2cwqA00
3D7IA 2Q0TA 1KNCA 2OUWA 2IJCA 3LVYA 3C1LA 1GU9A 1VKEA 2OYOA 2PFXA 4G9QA 5DIPA 1P8CA 2GMYA 3BEYA 2O4DA 1LW1A 2QEUA 1ME5A 5DIKA 2AF7A 2CWQA 2PRRA
chains in the Genus database with same CATH superfamily
2KZ7A 3D7IA 3LK2A 2Q0TA 1KNCA 2OUWA 2JN8A 2IJCA 3AAEA 3LVYA 3C1LA 1GU9A 1VKEA 2OYOA 2PFXA 4G9QA 4AKRA 3AA6A 2ES9A 3LK3A 5DIPA 1P8CA 2GMYA 1IZNA 3BEYA 2O4DA 3LK41 3AA1A 3AA0A 5AFUK 2PRRA 2QEUA 3AAAA 1ME5A 5DIKA 2AF7A 2KXPA 3AA7A 5ADXK 2CWQA 1LW1A
chains in the Genus database with same CATH topology
2KZ7A 3D7IA 3LK2A 2Q0TA 1KNCA 2OUWA 2JN8A 2IJCA 3AAEA 3LVYA 3C1LA 1GU9A 1VKEA 2OYOA 2PFXA 4G9QA 4AKRA 3AA6A 2ES9A 3LK3A 5DIPA 1P8CA 2GMYA 1IZNA 3BEYA 2O4DA 3LK41 3AA1A 3AA0A 5AFUK 2PRRA 2QEUA 3AAAA 1ME5A 5DIKA 2AF7A 2KXPA 3AA7A 5ADXK 2CWQA 1LW1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D7I A;  2Q0T A;  1KNC A;  2OUW A;  2IJC A;  3LVY A;  3C1L A;  1GU9 A;  1VKE A;  2OYO A;  2PFX A;  4G9Q A;  5DIP A;  1P8C A;  2GMY A;  3BEY A;  2O4D A;  1LW1 A;  2QEU A;  1ME5 A;  5DIK A;  2AF7 A;  2CWQ A;  2PRR A; 
#chains in the Genus database with same CATH topology
 2KZ7 A;  3D7I A;  3LK2 A;  2Q0T A;  1KNC A;  2OUW A;  2JN8 A;  2IJC A;  3AAE A;  3LVY A;  3C1L A;  1GU9 A;  1VKE A;  2OYO A;  2PFX A;  4G9Q A;  4AKR A;  3AA6 A;  2ES9 A;  3LK3 A;  5DIP A;  1P8C A;  2GMY A;  1IZN A;  3BEY A;  2O4D A;  3LK4 1;  3AA1 A;  3AA0 A;  5AFU K;  2PRR A;  2QEU A;  3AAA A;  1ME5 A;  5DIK A;  2AF7 A;  2KXP A;  3AA7 A;  5ADX K;  2CWQ A;  1LW1 A; 
#chains in the Genus database with same CATH homology
 2KZ7 A;  3D7I A;  3LK2 A;  2Q0T A;  1KNC A;  2OUW A;  2JN8 A;  2IJC A;  3AAE A;  3LVY A;  3C1L A;  1GU9 A;  1VKE A;  2OYO A;  2PFX A;  4G9Q A;  4AKR A;  3AA6 A;  2ES9 A;  3LK3 A;  5DIP A;  1P8C A;  2GMY A;  1IZN A;  3BEY A;  2O4D A;  3LK4 1;  3AA1 A;  3AA0 A;  5AFU K;  2PRR A;  2QEU A;  3AAA A;  1ME5 A;  5DIK A;  2AF7 A;  2KXP A;  3AA7 A;  5ADX K;  2CWQ A;  1LW1 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...