2CWQA

Crystal structure of conserved protein ttha0727 from thermus thermophilus hb8
Total Genus 42
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
126
structure length
126
Chain Sequence
SGLVPRGSHMDRTHERVLQAMAENLGEGLPRAIPLLAEKAPGLLLEHGRSWTYAMPEKGALDEKTRTLILLGIALATGSEACVKAMAHRAKRLGLSKEALLETLKIARQAQANAVLGHAAPLLEVL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal structure of the conserved protein TTHA0727 from Thermus thermophilus HB8 at 1.9 A resolution: A CMD family member distinct from carboxymuconolactone decarboxylase (CMD) and AhpD
pubmed doi rcsb
molecule tags Structural genomics, unknown function
source organism Thermus thermophilus
molecule keywords hypothetical protein TTHA0727
total genus 42
structure length 126
sequence length 126
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2005-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2cwqA00
2PRRA 2OUWA 2OYOA 5DIKA 2O4DA 4G9QA 2QEUA 2PFXA 2IJCA 2GMYA 2Q0TA 1P8CA 1LW1A 1KNCA 3LVYA 5DIPA 3D7IA 1GU9A 1VKEA 2AF7A 3BEYA 2CWQA 3C1LA 1ME5A
chains in the Genus database with same CATH superfamily
2PRRA 2OUWA 2OYOA 5DIKA 3AA1A 2O4DA 3LK3A 5AFUK 5ADXK 4G9QA 1IZNA 2JN8A 3AA7A 2QEUA 3AAEA 3LK41 2PFXA 3AA0A 2IJCA 2GMYA 2ES9A 4AKRA 1P8CA 1LW1A 2Q0TA 1KNCA 2KZ7A 3LVYA 5DIPA 2KXPA 3D7IA 1GU9A 1VKEA 2AF7A 3AAAA 3BEYA 2CWQA 3LK2A 3C1LA 3AA6A 1ME5A
chains in the Genus database with same CATH topology
2PRRA 2OUWA 2OYOA 5DIKA 3AA1A 2O4DA 3LK3A 5AFUK 5ADXK 4G9QA 1IZNA 2JN8A 3AA7A 2QEUA 3AAEA 3LK41 2PFXA 3AA0A 2IJCA 2GMYA 2ES9A 4AKRA 1P8CA 1LW1A 2Q0TA 1KNCA 2KZ7A 3LVYA 5DIPA 2KXPA 3D7IA 1GU9A 1VKEA 2AF7A 3AAAA 3BEYA 2CWQA 3LK2A 3C1LA 3AA6A 1ME5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PRR A;  2OUW A;  2OYO A;  5DIK A;  2O4D A;  4G9Q A;  2QEU A;  2PFX A;  2IJC A;  2GMY A;  2Q0T A;  1P8C A;  1LW1 A;  1KNC A;  3LVY A;  5DIP A;  3D7I A;  1GU9 A;  1VKE A;  2AF7 A;  3BEY A;  2CWQ A;  3C1L A;  1ME5 A; 
#chains in the Genus database with same CATH topology
 2PRR A;  2OUW A;  2OYO A;  5DIK A;  3AA1 A;  2O4D A;  3LK3 A;  5AFU K;  5ADX K;  4G9Q A;  1IZN A;  2JN8 A;  3AA7 A;  2QEU A;  3AAE A;  3LK4 1;  2PFX A;  3AA0 A;  2IJC A;  2GMY A;  2ES9 A;  4AKR A;  1P8C A;  1LW1 A;  2Q0T A;  1KNC A;  2KZ7 A;  3LVY A;  5DIP A;  2KXP A;  3D7I A;  1GU9 A;  1VKE A;  2AF7 A;  3AAA A;  3BEY A;  2CWQ A;  3LK2 A;  3C1L A;  3AA6 A;  1ME5 A; 
#chains in the Genus database with same CATH homology
 2PRR A;  2OUW A;  2OYO A;  5DIK A;  3AA1 A;  2O4D A;  3LK3 A;  5AFU K;  5ADX K;  4G9Q A;  1IZN A;  2JN8 A;  3AA7 A;  2QEU A;  3AAE A;  3LK4 1;  2PFX A;  3AA0 A;  2IJC A;  2GMY A;  2ES9 A;  4AKR A;  1P8C A;  1LW1 A;  2Q0T A;  1KNC A;  2KZ7 A;  3LVY A;  5DIP A;  2KXP A;  3D7I A;  1GU9 A;  1VKE A;  2AF7 A;  3AAA A;  3BEY A;  2CWQ A;  3LK2 A;  3C1L A;  3AA6 A;  1ME5 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...