2GMYA

Crystal structure of a protein of unknown function atu0492 from agrobacterium tumefaciens, putative antioxidant defence protein ahpd
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
147
structure length
147
Chain Sequence
KTRINYAKASPEAFKAVMALENYVQSSGLEHRFIHLIKLRASIINGCAFCVDMHVKESRHDGLSEQWINLMSVWRESPVYTEQERALLGWVDAVTKIAETGAPDDAFETLRAHFSDEEIVKITVAIGAINTWNRIAVGFRSQHPVEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The crystal structure of a hypothetical protein Atu0492 from Agrobacterium tumefaciens
rcsb
molecule tags Structural genomics, unknown function
source organism Agrobacterium tumefaciens str.
molecule keywords Hypothetical protein Atu0492
total genus 61
structure length 147
sequence length 147
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2006-04-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2gmyA00
1ME5A 2CWQA 1VKEA 1LW1A 2OYOA 3C1LA 2QEUA 2O4DA 3LVYA 2IJCA 1P8CA 2PFXA 3D7IA 1GU9A 5DIKA 4G9QA 2AF7A 5DIPA 2Q0TA 1KNCA 2GMYA 3BEYA 2PRRA 2OUWA
chains in the Genus database with same CATH superfamily
1ME5A 2KXPA 2CWQA 1VKEA 1LW1A 2OYOA 3C1LA 3AAAA 2QEUA 2O4DA 3AAEA 3LK41 3AA1A 3LVYA 2JN8A 2ES9A 2IJCA 3AA0A 1P8CA 4AKRA 1IZNA 3AA7A 2PFXA 3D7IA 2KZ7A 1GU9A 5ADXK 5DIKA 5AFUK 4G9QA 2AF7A 5DIPA 2Q0TA 1KNCA 2GMYA 3BEYA 3LK2A 2PRRA 2OUWA 3AA6A 3LK3A
chains in the Genus database with same CATH topology
1ME5A 2KXPA 2CWQA 1VKEA 1LW1A 2OYOA 3C1LA 3AAAA 2QEUA 2O4DA 3AAEA 3LK41 3AA1A 3LVYA 2JN8A 2ES9A 2IJCA 3AA0A 1P8CA 4AKRA 1IZNA 3AA7A 2PFXA 3D7IA 2KZ7A 1GU9A 5ADXK 5DIKA 5AFUK 4G9QA 2AF7A 5DIPA 2Q0TA 1KNCA 2GMYA 3BEYA 3LK2A 2PRRA 2OUWA 3AA6A 3LK3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ME5 A;  2CWQ A;  1VKE A;  1LW1 A;  2OYO A;  3C1L A;  2QEU A;  2O4D A;  3LVY A;  2IJC A;  1P8C A;  2PFX A;  3D7I A;  1GU9 A;  5DIK A;  4G9Q A;  2AF7 A;  5DIP A;  2Q0T A;  1KNC A;  2GMY A;  3BEY A;  2PRR A;  2OUW A; 
#chains in the Genus database with same CATH topology
 1ME5 A;  2KXP A;  2CWQ A;  1VKE A;  1LW1 A;  2OYO A;  3C1L A;  3AAA A;  2QEU A;  2O4D A;  3AAE A;  3LK4 1;  3AA1 A;  3LVY A;  2JN8 A;  2ES9 A;  2IJC A;  3AA0 A;  1P8C A;  4AKR A;  1IZN A;  3AA7 A;  2PFX A;  3D7I A;  2KZ7 A;  1GU9 A;  5ADX K;  5DIK A;  5AFU K;  4G9Q A;  2AF7 A;  5DIP A;  2Q0T A;  1KNC A;  2GMY A;  3BEY A;  3LK2 A;  2PRR A;  2OUW A;  3AA6 A;  3LK3 A; 
#chains in the Genus database with same CATH homology
 1ME5 A;  2KXP A;  2CWQ A;  1VKE A;  1LW1 A;  2OYO A;  3C1L A;  3AAA A;  2QEU A;  2O4D A;  3AAE A;  3LK4 1;  3AA1 A;  3LVY A;  2JN8 A;  2ES9 A;  2IJC A;  3AA0 A;  1P8C A;  4AKR A;  1IZN A;  3AA7 A;  2PFX A;  3D7I A;  2KZ7 A;  1GU9 A;  5ADX K;  5DIK A;  5AFU K;  4G9Q A;  2AF7 A;  5DIP A;  2Q0T A;  1KNC A;  2GMY A;  3BEY A;  3LK2 A;  2PRR A;  2OUW A;  3AA6 A;  3LK3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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