The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
34
|
sequence length |
109
|
structure length |
109
|
Chain Sequence |
VNFKDKSMPTAIEKALDFIGGMNTSASVPHSMDESTAKGILKYLHDLGVPVSPEVVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQEQLKELVLEH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Solution NMR structure of Q8ZRJ2 from Salmonella typhimurium. Northeast Structural Genomics target StR65.
rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Salmonella typhimurium
|
| molecule keywords |
Putative cytoplasmic protein
|
| total genus |
34
|
| structure length |
109
|
| sequence length |
109
|
| ec nomenclature | |
| pdb deposition date | 2006-12-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF08986 | DUF1889 | Domain of unknown function (DUF1889) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | AhpD-like | AhpD-like |
#chains in the Genus database with same CATH superfamily 2JN8 A; 2ES9 A; #chains in the Genus database with same CATH topology 1P8C A; 1ME5 A; 2AF7 A; 2O4D A; 1GU9 A; 1KNC A; 2QEU A; 1IZN A; 2KXP A; 3BEY A; 1LW1 A; 5DIP A; 3AAE A; 4G9Q A; 4AKR A; 5DIK A; 2IJC A; 2OUW A; 3AA7 A; 2OYO A; 2CWQ A; 2GMY A; 3D7I A; 5AFU K; 3LK2 A; 5ADX K; 3AA1 A; 3C1L A; 1VKE A; 2PRR A; 2JN8 A; 2PFX A; 3LVY A; 2ES9 A; 2Q0T A; 3AA6 A; 3AA0 A; 3LK4 1; 3LK3 A; 3AAA A; 2KZ7 A; #chains in the Genus database with same CATH homology 1P8C A; 1ME5 A; 2AF7 A; 2O4D A; 1GU9 A; 1KNC A; 2QEU A; 1IZN A; 2KXP A; 3BEY A; 1LW1 A; 5DIP A; 3AAE A; 4G9Q A; 4AKR A; 5DIK A; 2IJC A; 2OUW A; 3AA7 A; 2OYO A; 2CWQ A; 2GMY A; 3D7I A; 5AFU K; 3LK2 A; 5ADX K; 3AA1 A; 3C1L A; 1VKE A; 2PRR A; 2JN8 A; 2PFX A; 3LVY A; 2ES9 A; 2Q0T A; 3AA6 A; 3AA0 A; 3LK4 1; 3LK3 A; 3AAA A; 2KZ7 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
