2OUWA

Crystal structure of alkylhydroperoxidase ahpd core (yp_425393.1) from rhodospirillum rubrum atcc 11170 at 1.95 a resolution
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
135
structure length
135
Chain Sequence
GMATVRLLDDAEISTLPEVKAVFDDIRATRGSDFVNNIWRGLANDPALLKRTWEQVKTVMVGEGALDPLTREMIYLAVSTANSCSYCAHSHTAAARAKGMTPAQHAEVLAIIGLAAQTNALVTAMQIPVDEAFLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Alkylhydroperoxidase AhpD core (YP_425393.1) from Rhodospirillum rubrum ATCC 11170 at 1.95 A resolution
rcsb
molecule tags Oxidoreductase
source organism Rhodospirillum rubrum
molecule keywords Alkylhydroperoxidase AhpD core
total genus 46
structure length 135
sequence length 135
chains with identical sequence B
ec nomenclature ec 1.-.-.-:
pdb deposition date 2007-02-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2ouwA00
2PRRA 2AF7A 2OUWA 1P8CA 5DIPA 2PFXA 5DIKA 3C1LA 2O4DA 1VKEA 1KNCA 2IJCA 2CWQA 1LW1A 3BEYA 1GU9A 3LVYA 3D7IA 2QEUA 4G9QA 2GMYA 2OYOA 2Q0TA 1ME5A
chains in the Genus database with same CATH superfamily
3LK41 2PRRA 3AA7A 5AFUK 3LK2A 2AF7A 3AA6A 2OUWA 1P8CA 2KZ7A 5DIPA 2ES9A 2PFXA 2O4DA 1VKEA 3AAEA 3C1LA 5DIKA 1KNCA 2IJCA 3AA1A 2CWQA 5ADXK 2JN8A 2KXPA 1LW1A 3AA0A 3BEYA 1GU9A 3AAAA 3LVYA 3D7IA 1IZNA 2QEUA 4G9QA 2GMYA 2OYOA 2Q0TA 4AKRA 1ME5A 3LK3A
chains in the Genus database with same CATH topology
3LK41 2PRRA 3AA7A 5AFUK 3LK2A 2AF7A 3AA6A 2OUWA 1P8CA 2KZ7A 5DIPA 2ES9A 2PFXA 2O4DA 1VKEA 3AAEA 3C1LA 5DIKA 1KNCA 2IJCA 3AA1A 2CWQA 5ADXK 2JN8A 2KXPA 1LW1A 3AA0A 3BEYA 1GU9A 3AAAA 3LVYA 3D7IA 1IZNA 2QEUA 4G9QA 2GMYA 2OYOA 2Q0TA 4AKRA 1ME5A 3LK3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PRR A;  2AF7 A;  2OUW A;  1P8C A;  5DIP A;  2PFX A;  5DIK A;  3C1L A;  2O4D A;  1VKE A;  1KNC A;  2IJC A;  2CWQ A;  1LW1 A;  3BEY A;  1GU9 A;  3LVY A;  3D7I A;  2QEU A;  4G9Q A;  2GMY A;  2OYO A;  2Q0T A;  1ME5 A; 
#chains in the Genus database with same CATH topology
 3LK4 1;  2PRR A;  3AA7 A;  5AFU K;  3LK2 A;  2AF7 A;  3AA6 A;  2OUW A;  1P8C A;  2KZ7 A;  5DIP A;  2ES9 A;  2PFX A;  2O4D A;  1VKE A;  3AAE A;  3C1L A;  5DIK A;  1KNC A;  2IJC A;  3AA1 A;  2CWQ A;  5ADX K;  2JN8 A;  2KXP A;  1LW1 A;  3AA0 A;  3BEY A;  1GU9 A;  3AAA A;  3LVY A;  3D7I A;  1IZN A;  2QEU A;  4G9Q A;  2GMY A;  2OYO A;  2Q0T A;  4AKR A;  1ME5 A;  3LK3 A; 
#chains in the Genus database with same CATH homology
 3LK4 1;  2PRR A;  3AA7 A;  5AFU K;  3LK2 A;  2AF7 A;  3AA6 A;  2OUW A;  1P8C A;  2KZ7 A;  5DIP A;  2ES9 A;  2PFX A;  2O4D A;  1VKE A;  3AAE A;  3C1L A;  5DIK A;  1KNC A;  2IJC A;  3AA1 A;  2CWQ A;  5ADX K;  2JN8 A;  2KXP A;  1LW1 A;  3AA0 A;  3BEY A;  1GU9 A;  3AAA A;  3LVY A;  3D7I A;  1IZN A;  2QEU A;  4G9Q A;  2GMY A;  2OYO A;  2Q0T A;  4AKR A;  1ME5 A;  3LK3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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