2OUWA

Crystal structure of alkylhydroperoxidase ahpd core (yp_425393.1) from rhodospirillum rubrum atcc 11170 at 1.95 a resolution
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
135
structure length
135
Chain Sequence
GMATVRLLDDAEISTLPEVKAVFDDIRATRGSDFVNNIWRGLANDPALLKRTWEQVKTVMVGEGALDPLTREMIYLAVSTANSCSYCAHSHTAAARAKGMTPAQHAEVLAIIGLAAQTNALVTAMQIPVDEAFLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
source organism Rhodospirillum rubrum
publication title Crystal structure of Alkylhydroperoxidase AhpD core (YP_425393.1) from Rhodospirillum rubrum ATCC 11170 at 1.95 A resolution
rcsb
molecule keywords Alkylhydroperoxidase AhpD core
total genus 46
structure length 135
sequence length 135
chains with identical sequence B
ec nomenclature ec 1.-.-.-:
pdb deposition date 2007-02-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2ouwA00
3BEYA 1KNCA 1ME5A 3LVYA 2AF7A 2CWQA 2IJCA 2QEUA 5DIPA 3D7IA 2OUWA 2PRRA 1LW1A 1P8CA 4G9QA 1GU9A 2OYOA 3C1LA 2PFXA 2GMYA 5DIKA 2Q0TA 2O4DA 1VKEA
chains in the Genus database with same CATH superfamily
3BEYA 5ADXK 3LK41 3AA6A 1KNCA 1ME5A 3LVYA 2AF7A 2JN8A 2CWQA 2IJCA 2QEUA 3AA1A 5DIPA 1IZNA 3D7IA 2OUWA 3LK2A 2PRRA 1LW1A 3AAAA 1P8CA 3AAEA 4G9QA 1GU9A 2OYOA 3AA7A 3C1LA 5AFUK 2KZ7A 3LK3A 2PFXA 2KXPA 2GMYA 3AA0A 5DIKA 2Q0TA 2ES9A 2O4DA 1VKEA 4AKRA
chains in the Genus database with same CATH topology
3BEYA 5ADXK 3LK41 3AA6A 1KNCA 1ME5A 3LVYA 2AF7A 2JN8A 2CWQA 2IJCA 2QEUA 3AA1A 5DIPA 1IZNA 3D7IA 2OUWA 3LK2A 2PRRA 1LW1A 3AAAA 1P8CA 3AAEA 4G9QA 1GU9A 2OYOA 3AA7A 3C1LA 5AFUK 2KZ7A 3LK3A 2PFXA 2KXPA 2GMYA 3AA0A 5DIKA 2Q0TA 2ES9A 2O4DA 1VKEA 4AKRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BEY A;  1KNC A;  1ME5 A;  3LVY A;  2AF7 A;  2CWQ A;  2IJC A;  2QEU A;  5DIP A;  3D7I A;  2OUW A;  2PRR A;  1LW1 A;  1P8C A;  4G9Q A;  1GU9 A;  2OYO A;  3C1L A;  2PFX A;  2GMY A;  5DIK A;  2Q0T A;  2O4D A;  1VKE A; 
#chains in the Genus database with same CATH topology
 3BEY A;  5ADX K;  3LK4 1;  3AA6 A;  1KNC A;  1ME5 A;  3LVY A;  2AF7 A;  2JN8 A;  2CWQ A;  2IJC A;  2QEU A;  3AA1 A;  5DIP A;  1IZN A;  3D7I A;  2OUW A;  3LK2 A;  2PRR A;  1LW1 A;  3AAA A;  1P8C A;  3AAE A;  4G9Q A;  1GU9 A;  2OYO A;  3AA7 A;  3C1L A;  5AFU K;  2KZ7 A;  3LK3 A;  2PFX A;  2KXP A;  2GMY A;  3AA0 A;  5DIK A;  2Q0T A;  2ES9 A;  2O4D A;  1VKE A;  4AKR A; 
#chains in the Genus database with same CATH homology
 3BEY A;  5ADX K;  3LK4 1;  3AA6 A;  1KNC A;  1ME5 A;  3LVY A;  2AF7 A;  2JN8 A;  2CWQ A;  2IJC A;  2QEU A;  3AA1 A;  5DIP A;  1IZN A;  3D7I A;  2OUW A;  3LK2 A;  2PRR A;  1LW1 A;  3AAA A;  1P8C A;  3AAE A;  4G9Q A;  1GU9 A;  2OYO A;  3AA7 A;  3C1L A;  5AFU K;  2KZ7 A;  3LK3 A;  2PFX A;  2KXP A;  2GMY A;  3AA0 A;  5DIK A;  2Q0T A;  2ES9 A;  2O4D A;  1VKE A;  4AKR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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