3CC2W

The refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution with rrna sequence for the 23s rrna and genome-derived sequences for r-proteins
Total Genus 50

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR
2040608010012014014012010080604020
01020304050Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYS1 (2-6)TII2 (28-31)TII1 (10-13)AH1 (15-24)AH2 (39-48)S2 (31-35)S4 (115-117)S3 (52-55)AH3 (59-69)AH6 (143-153)TVIII1 (72-75)AH4 (81-86)AH5 (93-102)TII3 (121-124)TI1 (48-51)S5 (139-140)TIV1 (127-130)3H2 (132-134)3H1 (107-110)Updating...
connected with : NaN
molecule tags Ribosome
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
molecule keywords 50S ribosomal protein L2P
total genus 50
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2008-02-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3cc2W02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 3cc2W01
3CCJW 3CMAW 1M90X 1VQPW 1VQMW 4IO9W 1VQLW 1W2BV 3G71W 3OW2V 2OTJW 3CCEW 3I56W 1YHQW 1YJ9W 1Q81X 1VQKW 1VQ6W 4WFNW 3PIPW 1Q82X 1Q7YX 3CMEW 1KQSV 2OTLW 3G6EW 3CCQW 1YJNW 2ZJPW 1JJ2V 1QVGV 1VQ7W 1VQNW 2ZJRW 1K9MX 1YITW 3CCMW 5JVGW 3CCSW 1VQ8W 3CC7W 4U67W 5GAEa 1VQ4W 3DLLW 4WFAW 5GAGa 3CCRW 1KC8X 4WCEW 5JVHW 5HL7W 3CPWV 5GAHa 1N8RX 5DM7W 3CCUW 1VQOW 3PIOW 4UY8Z 3CC4W 1QVFV 1YIJW 3CCVW 1M1KX 2ZJQW 4WF9W 1VQ9W 3CD6W 1KD1X 3G4SW 2QA4W 1NJIX 1S72W 2QEXW 1YJWW 4IOCW 1VQ5W 4WFBW 1K73X 1BXYA 3CXCV 3CC2W 1Q86X 1YI2W 1K8AX 3I55W 5GADa 3J7ZZ 3CCLW 4IOAW 3CF5W 5DM6W
chains in the Genus database with same CATH superfamily
5M19A 3CCJW 3CMAW 1M90X 4YKAA 3W7XA 1VQPW 1VQMW 4IO9W 2W9RA 3G1BA 1VQLW 1W2BV 3G71W 3GQ0A 3OW2V 2OTJW 3O1FB 3CCEW 3I56W 1YHQW 1YJ9W 4BL3A 1Q81X 1VQKW 1VQ6W 4WFNW 3PIPW 3O2HA 3O1FA 5GW7A 1Q82X 1Q7YX 4CJNA 3CMEW 1KQSV 2OTLW 1MWSA 3G6EW 3GQ1A 3G3PA 3CCQW 1YJNW 4YJMA 2ZJPW 1JJ2V 1QVGV 3O2BA 1VQ7W 1RQUA 1VQNW 2ZJRW 1K9MX 1YITW 3CCMW 5JVGW 3CCSW 3GW1A 3ZFZA 1MG9A 1VQ8W 3CC7W 4U67W 5GAEa 1VQ4W 3DLLW 4BL2A 4WFAW 5GAGa 1MWUA 3CCRW 1DD3A 1KC8X 4WCEW 5JVHW 1MWRA 5CA3A 5HL7W 1MBXC 3CPWV 5GAHa 1N8RX 5DM7W 3CCUW 4YJXA 1CTFA 4DKIA 1DD4A 1MBUC 1MBVB 1VQOW 3PIOW 5M18A 2WA9A 4UY8Z 3CC4W 1QVFV 1YIJW 3CCVW 1LZWA 1M1KX 3D3IA 2ZJQW 4C1NA 4WF9W 1VQ9W 3CD6W 1KD1X 3O2OA 3W7TA 3G4SW 2QA4W 1NJIX 1S72W 1R6QC 2QEXW 5M1AA 3W7WA 1YJWW 4CPKA 4IOCW 1RQVA 1VQ5W 3G19A 3ZG5A 4WFBW 1R6OC 2WA8A 3W7SA 1K73X 1BXYA 1MWTA 3DNJA 3CXCV 3CC2W 1RQSA 3ZG0A 1Q86X 1VQQA 1YI2W 3W7UA 1K8AX 3I55W 5GADa 3J7ZZ 3CCLW 4IOAW 3CF5W 5DM6W
chains in the Genus database with same CATH topology
3CCJW 3CMAW 1M90X 1VQPW 1VQMW 4IO9W 1VQLW 1W2BV 3G71W 3OW2V 2OTJW 3CCEW 3I56W 1YHQW 1YJ9W 1Q81X 1VQKW 1VQ6W 4WFNW 3PIPW 1Q82X 1Q7YX 3CMEW 1KQSV 2OTLW 3G6EW 3CCQW 1YJNW 2ZJPW 1JJ2V 1QVGV 1VQ7W 1VQNW 2ZJRW 1K9MX 1YITW 3CCMW 5JVGW 3CCSW 1VQ8W 3CC7W 4U67W 5GAEa 1VQ4W 3DLLW 4WFAW 5GAGa 3CCRW 1KC8X 4WCEW 5JVHW 5HL7W 3CPWV 5GAHa 1N8RX 5DM7W 3CCUW 1VQOW 3PIOW 4UY8Z 3CC4W 1QVFV 1YIJW 3CCVW 1M1KX 2ZJQW 4C1NA 4WF9W 1VQ9W 3CD6W 1KD1X 3G4SW 2QA4W 1NJIX 1S72W 2QEXW 1YJWW 4IOCW 1VQ5W 4WFBW 1K73X 1BXYA 3CXCV 3CC2W 1Q86X 1YI2W 1K8AX 3I55W 5GADa 3J7ZZ 3CCLW 4IOAW 3CF5W 5DM6W
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3CCJ W;  3CMA W;  1M90 X;  1VQP W;  1VQM W;  4IO9 W;  1VQL W;  1W2B V;  3G71 W;  3OW2 V;  2OTJ W;  3CCE W;  3I56 W;  1YHQ W;  1YJ9 W;  1Q81 X;  1VQK W;  1VQ6 W;  4WFN W;  3PIP W;  1Q82 X;  1Q7Y X;  3CME W;  1KQS V;  2OTL W;  3G6E W;  3CCQ W;  1YJN W;  2ZJP W;  1JJ2 V;  1QVG V;  1VQ7 W;  1VQN W;  2ZJR W;  1K9M X;  1YIT W;  3CCM W;  5JVG W;  3CCS W;  1VQ8 W;  3CC7 W;  4U67 W;  5GAE a;  1VQ4 W;  3DLL W;  4WFA W;  5GAG a;  3CCR W;  1KC8 X;  4WCE W;  5JVH W;  5HL7 W;  3CPW V;  5GAH a;  1N8R X;  5DM7 W;  3CCU W;  1VQO W;  3PIO W;  4UY8 Z;  3CC4 W;  1QVF V;  1YIJ W;  3CCV W;  1M1K X;  2ZJQ W;  4WF9 W;  1VQ9 W;  3CD6 W;  1KD1 X;  3G4S W;  2QA4 W;  1NJI X;  1S72 W;  2QEX W;  1YJW W;  4IOC W;  1VQ5 W;  4WFB W;  1K73 X;  1BXY A;  3CXC V;  3CC2 W;  1Q86 X;  1YI2 W;  1K8A X;  3I55 W;  5GAD a;  3J7Z Z;  3CCL W;  4IOA W;  3CF5 W;  5DM6 W; 
#chains in the Genus database with same CATH topology
 5M19 A;  3CCJ W;  3CMA W;  1M90 X;  4YKA A;  3W7X A;  1VQP W;  1VQM W;  4IO9 W;  2W9R A;  3G1B A;  1VQL W;  1W2B V;  3G71 W;  3GQ0 A;  3OW2 V;  2OTJ W;  3O1F B;  3CCE W;  3I56 W;  1YHQ W;  1YJ9 W;  4BL3 A;  1Q81 X;  1VQK W;  1VQ6 W;  4WFN W;  3PIP W;  3O2H A;  3O1F A;  5GW7 A;  1Q82 X;  1Q7Y X;  4CJN A;  3CME W;  1KQS V;  2OTL W;  1MWS A;  3G6E W;  3GQ1 A;  3G3P A;  3CCQ W;  1YJN W;  4YJM A;  2ZJP W;  1JJ2 V;  1QVG V;  3O2B A;  1VQ7 W;  1RQU A;  1VQN W;  2ZJR W;  1K9M X;  1YIT W;  3CCM W;  5JVG W;  3CCS W;  3GW1 A;  3ZFZ A;  1MG9 A;  1VQ8 W;  3CC7 W;  4U67 W;  5GAE a;  1VQ4 W;  3DLL W;  4BL2 A;  4WFA W;  5GAG a;  1MWU A;  3CCR W;  1DD3 A;  1KC8 X;  4WCE W;  5JVH W;  1MWR A;  5CA3 A;  5HL7 W;  1MBX C;  3CPW V;  5GAH a;  1N8R X;  5DM7 W;  3CCU W;  4YJX A;  1CTF A;  4DKI A;  1DD4 A;  1MBU C;  1MBV B;  1VQO W;  3PIO W;  5M18 A;  2WA9 A;  4UY8 Z;  3CC4 W;  1QVF V;  1YIJ W;  3CCV W;  1LZW A;  1M1K X;  3D3I A;  2ZJQ W;  4C1N A;  4WF9 W;  1VQ9 W;  3CD6 W;  1KD1 X;  3O2O A;  3W7T A;  3G4S W;  2QA4 W;  1NJI X;  1S72 W;  1R6Q C;  2QEX W;  5M1A A;  3W7W A;  1YJW W;  4CPK A;  4IOC W;  1RQV A;  1VQ5 W;  3G19 A;  3ZG5 A;  4WFB W;  1R6O C;  2WA8 A;  3W7S A;  1K73 X;  1BXY A;  1MWT A;  3DNJ A;  3CXC V;  3CC2 W;  1RQS A;  3ZG0 A;  1Q86 X;  1VQQ A;  1YI2 W;  3W7U A;  1K8A X;  3I55 W;  5GAD a;  3J7Z Z;  3CCL W;  4IOA W;  3CF5 W;  5DM6 W; 
#chains in the Genus database with same CATH homology
 3CCJ W;  3CMA W;  1M90 X;  1VQP W;  1VQM W;  4IO9 W;  1VQL W;  1W2B V;  3G71 W;  3OW2 V;  2OTJ W;  3CCE W;  3I56 W;  1YHQ W;  1YJ9 W;  1Q81 X;  1VQK W;  1VQ6 W;  4WFN W;  3PIP W;  1Q82 X;  1Q7Y X;  3CME W;  1KQS V;  2OTL W;  3G6E W;  3CCQ W;  1YJN W;  2ZJP W;  1JJ2 V;  1QVG V;  1VQ7 W;  1VQN W;  2ZJR W;  1K9M X;  1YIT W;  3CCM W;  5JVG W;  3CCS W;  1VQ8 W;  3CC7 W;  4U67 W;  5GAE a;  1VQ4 W;  3DLL W;  4WFA W;  5GAG a;  3CCR W;  1KC8 X;  4WCE W;  5JVH W;  5HL7 W;  3CPW V;  5GAH a;  1N8R X;  5DM7 W;  3CCU W;  1VQO W;  3PIO W;  4UY8 Z;  3CC4 W;  1QVF V;  1YIJ W;  3CCV W;  1M1K X;  2ZJQ W;  4C1N A;  4WF9 W;  1VQ9 W;  3CD6 W;  1KD1 X;  3G4S W;  2QA4 W;  1NJI X;  1S72 W;  2QEX W;  1YJW W;  4IOC W;  1VQ5 W;  4WFB W;  1K73 X;  1BXY A;  3CXC V;  3CC2 W;  1Q86 X;  1YI2 W;  1K8A X;  3I55 W;  5GAD a;  3J7Z Z;  3CCL W;  4IOA W;  3CF5 W;  5DM6 W;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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