3CCJW

Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation c2534u
Total Genus 43

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYS1 (2-6)TII2 (28-31)TII1 (10-13)AH1 (15-24)AH2 (39-48)S2 (31-35)S4 (115-117)AH3 (59-69)AH5 (93-102)AH4 (81-87)TIV3 (106-109)TIV4 (107-110)TI2 (108-111)TII3 (121-124)AH6 (143-153)TIV5 (131-134)TI4 (132-135)S3 (52-55)TIV1 (48-51)TI3 (127-130)Updating...
connected with : NaN
molecule tags Ribosome
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
molecule keywords 50S ribosomal protein L2P
total genus 43
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2008-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3ccjW02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 3ccjW01
2ZJRW 3CCEW 3G4SW 2ZJQW 3CCQW 4WF9W 1YHQW 1VQNW 5GAEa 1VQ7W 1Q7YX 1VQLW 1VQKW 1BXYA 3CCRW 1VQ9W 3OW2V 3DLLW 5JVHW 1M90X 1M1KX 3G6EW 3CCMW 1VQ5W 1VQ8W 1W2BV 1K9MX 1S72W 2QEXW 1KQSV 1YJWW 5GADa 1Q82X 3CCLW 4WFAW 1YJ9W 3J7ZZ 1N8RX 3CC4W 3CCJW 5DM7W 2OTLW 4WFBW 3I56W 1K73X 3CPWV 3CC7W 5GAGa 1Q86X 1YJNW 2OTJW 3CXCV 1KC8X 4IO9W 3I55W 5HL7W 1QVFV 2ZJPW 5DM6W 1VQPW 3CCVW 1NJIX 3CCUW 4IOCW 1Q81X 1VQOW 1VQMW 4WFNW 1VQ6W 4WCEW 3G71W 3CD6W 3CMEW 4U67W 1YITW 1KD1X 4UY8Z 5JVGW 1VQ4W 1QVGV 3CCSW 3PIOW 3CF5W 3PIPW 3CMAW 2QA4W 5GAHa 3CC2W 1YIJW 4IOAW 1JJ2V 1YI2W 1K8AX
chains in the Genus database with same CATH superfamily
2ZJRW 3CCEW 3G4SW 4C1NA 1MWRA 2WA8A 3O1FB 3ZG5A 3W7WA 3ZG0A 1MBUC 4YJXA 2ZJQW 3O1FA 3W7UA 3CCQW 4WF9W 1YHQW 1VQNW 5GAEa 1MG9A 1VQ7W 1MBXC 3W7TA 1Q7YX 1VQLW 1VQKW 1BXYA 1MWSA 3CCRW 1VQ9W 3OW2V 1R6QC 3DLLW 5JVHW 1M90X 1M1KX 4YJMA 1R6OC 1DD4A 3G6EW 3DNJA 3GW1A 3CCMW 3D3IA 1VQ5W 1VQ8W 2W9RA 1W2BV 1K9MX 1S72W 2QEXW 1KQSV 1YJWW 1CTFA 4BL2A 5GADa 1Q82X 3CCLW 4DKIA 4BL3A 4YKAA 2WA9A 4WFAW 1YJ9W 3J7ZZ 5M18A 1N8RX 3CC4W 3CCJW 1MBVB 1MWUA 5M1AA 5DM7W 4CJNA 2OTLW 4WFBW 3I56W 1K73X 3CPWV 3CC7W 1MWTA 5GAGa 1Q86X 1YJNW 5CA3A 3O2HA 2OTJW 3CXCV 3W7SA 1KC8X 4IO9W 3I55W 5HL7W 1QVFV 2ZJPW 5DM6W 1VQPW 3CCVW 1RQVA 4CPKA 1NJIX 5GW7A 3CCUW 1DD3A 3GQ0A 1VQQA 4IOCW 3ZFZA 1Q81X 1VQOW 1VQMW 4WFNW 1VQ6W 4WCEW 3G71W 3CD6W 3G1BA 3CMEW 4U67W 1YITW 1KD1X 3G19A 4UY8Z 5JVGW 1VQ4W 3W7XA 1QVGV 3CCSW 3PIOW 3CF5W 3PIPW 3CMAW 2QA4W 3O2OA 1RQSA 3GQ1A 5M19A 5GAHa 1RQUA 3CC2W 1YIJW 1LZWA 4IOAW 3G3PA 1JJ2V 3O2BA 1YI2W 1K8AX
chains in the Genus database with same CATH topology
2ZJRW 3CCEW 3G4SW 4C1NA 2ZJQW 3CCQW 4WF9W 1YHQW 1VQNW 5GAEa 1VQ7W 1Q7YX 1VQLW 1VQKW 1BXYA 3CCRW 1VQ9W 3OW2V 3DLLW 5JVHW 1M90X 1M1KX 3G6EW 3CCMW 1VQ5W 1VQ8W 1W2BV 1K9MX 1S72W 2QEXW 1KQSV 1YJWW 5GADa 1Q82X 3CCLW 4WFAW 1YJ9W 3J7ZZ 1N8RX 3CC4W 3CCJW 5DM7W 2OTLW 4WFBW 3I56W 1K73X 3CPWV 3CC7W 5GAGa 1Q86X 1YJNW 2OTJW 3CXCV 1KC8X 4IO9W 3I55W 5HL7W 1QVFV 2ZJPW 5DM6W 1VQPW 3CCVW 1NJIX 3CCUW 4IOCW 1Q81X 1VQOW 1VQMW 4WFNW 1VQ6W 4WCEW 3G71W 3CD6W 3CMEW 4U67W 1YITW 1KD1X 4UY8Z 5JVGW 1VQ4W 1QVGV 3CCSW 3PIOW 3CF5W 3PIPW 3CMAW 2QA4W 5GAHa 3CC2W 1YIJW 4IOAW 1JJ2V 1YI2W 1K8AX
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2ZJR W;  3CCE W;  3G4S W;  2ZJQ W;  3CCQ W;  4WF9 W;  1YHQ W;  1VQN W;  5GAE a;  1VQ7 W;  1Q7Y X;  1VQL W;  1VQK W;  1BXY A;  3CCR W;  1VQ9 W;  3OW2 V;  3DLL W;  5JVH W;  1M90 X;  1M1K X;  3G6E W;  3CCM W;  1VQ5 W;  1VQ8 W;  1W2B V;  1K9M X;  1S72 W;  2QEX W;  1KQS V;  1YJW W;  5GAD a;  1Q82 X;  3CCL W;  4WFA W;  1YJ9 W;  3J7Z Z;  1N8R X;  3CC4 W;  3CCJ W;  5DM7 W;  2OTL W;  4WFB W;  3I56 W;  1K73 X;  3CPW V;  3CC7 W;  5GAG a;  1Q86 X;  1YJN W;  2OTJ W;  3CXC V;  1KC8 X;  4IO9 W;  3I55 W;  5HL7 W;  1QVF V;  2ZJP W;  5DM6 W;  1VQP W;  3CCV W;  1NJI X;  3CCU W;  4IOC W;  1Q81 X;  1VQO W;  1VQM W;  4WFN W;  1VQ6 W;  4WCE W;  3G71 W;  3CD6 W;  3CME W;  4U67 W;  1YIT W;  1KD1 X;  4UY8 Z;  5JVG W;  1VQ4 W;  1QVG V;  3CCS W;  3PIO W;  3CF5 W;  3PIP W;  3CMA W;  2QA4 W;  5GAH a;  3CC2 W;  1YIJ W;  4IOA W;  1JJ2 V;  1YI2 W;  1K8A X; 
#chains in the Genus database with same CATH topology
 2ZJR W;  3CCE W;  3G4S W;  4C1N A;  1MWR A;  2WA8 A;  3O1F B;  3ZG5 A;  3W7W A;  3ZG0 A;  1MBU C;  4YJX A;  2ZJQ W;  3O1F A;  3W7U A;  3CCQ W;  4WF9 W;  1YHQ W;  1VQN W;  5GAE a;  1MG9 A;  1VQ7 W;  1MBX C;  3W7T A;  1Q7Y X;  1VQL W;  1VQK W;  1BXY A;  1MWS A;  3CCR W;  1VQ9 W;  3OW2 V;  1R6Q C;  3DLL W;  5JVH W;  1M90 X;  1M1K X;  4YJM A;  1R6O C;  1DD4 A;  3G6E W;  3DNJ A;  3GW1 A;  3CCM W;  3D3I A;  1VQ5 W;  1VQ8 W;  2W9R A;  1W2B V;  1K9M X;  1S72 W;  2QEX W;  1KQS V;  1YJW W;  1CTF A;  4BL2 A;  5GAD a;  1Q82 X;  3CCL W;  4DKI A;  4BL3 A;  4YKA A;  2WA9 A;  4WFA W;  1YJ9 W;  3J7Z Z;  5M18 A;  1N8R X;  3CC4 W;  3CCJ W;  1MBV B;  1MWU A;  5M1A A;  5DM7 W;  4CJN A;  2OTL W;  4WFB W;  3I56 W;  1K73 X;  3CPW V;  3CC7 W;  1MWT A;  5GAG a;  1Q86 X;  1YJN W;  5CA3 A;  3O2H A;  2OTJ W;  3CXC V;  3W7S A;  1KC8 X;  4IO9 W;  3I55 W;  5HL7 W;  1QVF V;  2ZJP W;  5DM6 W;  1VQP W;  3CCV W;  1RQV A;  4CPK A;  1NJI X;  5GW7 A;  3CCU W;  1DD3 A;  3GQ0 A;  1VQQ A;  4IOC W;  3ZFZ A;  1Q81 X;  1VQO W;  1VQM W;  4WFN W;  1VQ6 W;  4WCE W;  3G71 W;  3CD6 W;  3G1B A;  3CME W;  4U67 W;  1YIT W;  1KD1 X;  3G19 A;  4UY8 Z;  5JVG W;  1VQ4 W;  3W7X A;  1QVG V;  3CCS W;  3PIO W;  3CF5 W;  3PIP W;  3CMA W;  2QA4 W;  3O2O A;  1RQS A;  3GQ1 A;  5M19 A;  5GAH a;  1RQU A;  3CC2 W;  1YIJ W;  1LZW A;  4IOA W;  3G3P A;  1JJ2 V;  3O2B A;  1YI2 W;  1K8A X; 
#chains in the Genus database with same CATH homology
 2ZJR W;  3CCE W;  3G4S W;  4C1N A;  2ZJQ W;  3CCQ W;  4WF9 W;  1YHQ W;  1VQN W;  5GAE a;  1VQ7 W;  1Q7Y X;  1VQL W;  1VQK W;  1BXY A;  3CCR W;  1VQ9 W;  3OW2 V;  3DLL W;  5JVH W;  1M90 X;  1M1K X;  3G6E W;  3CCM W;  1VQ5 W;  1VQ8 W;  1W2B V;  1K9M X;  1S72 W;  2QEX W;  1KQS V;  1YJW W;  5GAD a;  1Q82 X;  3CCL W;  4WFA W;  1YJ9 W;  3J7Z Z;  1N8R X;  3CC4 W;  3CCJ W;  5DM7 W;  2OTL W;  4WFB W;  3I56 W;  1K73 X;  3CPW V;  3CC7 W;  5GAG a;  1Q86 X;  1YJN W;  2OTJ W;  3CXC V;  1KC8 X;  4IO9 W;  3I55 W;  5HL7 W;  1QVF V;  2ZJP W;  5DM6 W;  1VQP W;  3CCV W;  1NJI X;  3CCU W;  4IOC W;  1Q81 X;  1VQO W;  1VQM W;  4WFN W;  1VQ6 W;  4WCE W;  3G71 W;  3CD6 W;  3CME W;  4U67 W;  1YIT W;  1KD1 X;  4UY8 Z;  5JVG W;  1VQ4 W;  1QVG V;  3CCS W;  3PIO W;  3CF5 W;  3PIP W;  3CMA W;  2QA4 W;  5GAH a;  3CC2 W;  1YIJ W;  4IOA W;  1JJ2 V;  1YI2 W;  1K8A X;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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