3CCMW

Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation g2611u
Total Genus 52

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR
2040608010012014014012010080604020
01020304050Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYS1 (2-6)TII2 (28-31)TII1 (10-13)AH1 (15-24)AH2 (39-48)S2 (31-35)S6 (115-117)S3 (52-55)AH3 (59-69)AH6 (143-153)S4 (71-72)S5 (112-113)TIV2 (72-75)AH4 (81-87)AH5 (93-102)3H1 (107-110)TII3 (121-124)TI1 (48-51)S7 (139-140)TIV3 (127-130)3H2 (132-134)Updating...
connected with : NaN
molecule tags Ribosome
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
molecule keywords 50S ribosomal protein L2P
total genus 52
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2008-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3ccmW02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 3ccmW01
2QEXW 1Q86X 1VQMW 1M90X 3PIOW 5GADa 2ZJQW 3CCMW 1VQKW 3PIPW 1VQPW 4IOCW 1Q7YX 5HL7W 1VQ5W 5DM7W 1QVFV 1K73X 4WF9W 1K8AX 3CCQW 1YITW 5DM6W 3CF5W 2OTJW 1VQ8W 2OTLW 1YJ9W 5GAHa 1BXYA 3G71W 4WFNW 1VQ4W 5GAEa 4IO9W 3I55W 1Q82X 5GAGa 4UY8Z 4WFBW 3CCUW 1KQSV 3DLLW 1M1KX 2ZJPW 3CCSW 3CC2W 1VQNW 1YJNW 1VQ9W 1VQ7W 5JVGW 3G4SW 1YJWW 4IOAW 1K9MX 3CXCV 4WFAW 5JVHW 3CCJW 1KC8X 1NJIX 3CCEW 1S72W 3I56W 3CCLW 3CCRW 1Q81X 1JJ2V 3G6EW 1YIJW 3CMEW 1VQLW 3CD6W 1VQOW 1QVGV 1KD1X 3CPWV 4U67W 1YHQW 1VQ6W 2ZJRW 1W2BV 1YI2W 3CMAW 3CCVW 3OW2V 3J7ZZ 3CC4W 3CC7W 1N8RX 2QA4W 4WCEW
chains in the Genus database with same CATH superfamily
2QEXW 1Q86X 1VQMW 1DD4A 1M90X 3O1FB 3PIOW 5GADa 2ZJQW 3CCMW 1VQKW 2W9RA 1DD3A 4CJNA 3PIPW 1VQPW 4IOCW 4DKIA 3W7SA 1Q7YX 5HL7W 1VQ5W 5DM7W 5CA3A 1QVFV 1R6OC 1K73X 4WF9W 3W7TA 3W7XA 1K8AX 3CCQW 1YITW 4YKAA 3ZFZA 5DM6W 3CF5W 2OTJW 1VQ8W 4YJXA 2OTLW 4YJMA 1YJ9W 1MBVB 1MWRA 5GAHa 1BXYA 3G71W 4WFNW 1VQ4W 1MBXC 5GAEa 4IO9W 3I55W 1Q82X 2WA9A 3D3IA 3GQ1A 1RQVA 3O1FA 5GAGa 3O2OA 1RQSA 3ZG0A 4UY8Z 4WFBW 1MWSA 1MWUA 3CCUW 1KQSV 3G3PA 3DLLW 1M1KX 2ZJPW 3CCSW 3CC2W 1VQNW 1YJNW 2WA8A 1VQ9W 3O2BA 1MBUC 1VQ7W 1RQUA 3G19A 5JVGW 3G4SW 1YJWW 4IOAW 1K9MX 3CXCV 4WFAW 5JVHW 3CCJW 1KC8X 4C1NA 1NJIX 3W7UA 3CCEW 1R6QC 1S72W 5M19A 3W7WA 3I56W 3CCLW 3GW1A 3CCRW 1Q81X 3G1BA 1VQQA 1JJ2V 4CPKA 3G6EW 1YIJW 4BL2A 3CMEW 1VQLW 3CD6W 3O2HA 1VQOW 1QVGV 1KD1X 3CPWV 1CTFA 4U67W 1YHQW 5M1AA 1LZWA 1VQ6W 2ZJRW 1W2BV 3ZG5A 1MG9A 1YI2W 5M18A 3CMAW 3CCVW 3OW2V 3GQ0A 3DNJA 3J7ZZ 3CC4W 3CC7W 1N8RX 4BL3A 2QA4W 4WCEW 5GW7A 1MWTA
chains in the Genus database with same CATH topology
2QEXW 1Q86X 1VQMW 1M90X 3PIOW 5GADa 2ZJQW 3CCMW 1VQKW 3PIPW 1VQPW 4IOCW 1Q7YX 5HL7W 1VQ5W 5DM7W 1QVFV 1K73X 4WF9W 1K8AX 3CCQW 1YITW 5DM6W 3CF5W 2OTJW 1VQ8W 2OTLW 1YJ9W 5GAHa 1BXYA 3G71W 4WFNW 1VQ4W 5GAEa 4IO9W 3I55W 1Q82X 5GAGa 4UY8Z 4WFBW 3CCUW 1KQSV 3DLLW 1M1KX 2ZJPW 3CCSW 3CC2W 1VQNW 1YJNW 1VQ9W 1VQ7W 5JVGW 3G4SW 1YJWW 4IOAW 1K9MX 3CXCV 4WFAW 5JVHW 3CCJW 1KC8X 4C1NA 1NJIX 3CCEW 1S72W 3I56W 3CCLW 3CCRW 1Q81X 1JJ2V 3G6EW 1YIJW 3CMEW 1VQLW 3CD6W 1VQOW 1QVGV 1KD1X 3CPWV 4U67W 1YHQW 1VQ6W 2ZJRW 1W2BV 1YI2W 3CMAW 3CCVW 3OW2V 3J7ZZ 3CC4W 3CC7W 1N8RX 2QA4W 4WCEW
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2QEX W;  1Q86 X;  1VQM W;  1M90 X;  3PIO W;  5GAD a;  2ZJQ W;  3CCM W;  1VQK W;  3PIP W;  1VQP W;  4IOC W;  1Q7Y X;  5HL7 W;  1VQ5 W;  5DM7 W;  1QVF V;  1K73 X;  4WF9 W;  1K8A X;  3CCQ W;  1YIT W;  5DM6 W;  3CF5 W;  2OTJ W;  1VQ8 W;  2OTL W;  1YJ9 W;  5GAH a;  1BXY A;  3G71 W;  4WFN W;  1VQ4 W;  5GAE a;  4IO9 W;  3I55 W;  1Q82 X;  5GAG a;  4UY8 Z;  4WFB W;  3CCU W;  1KQS V;  3DLL W;  1M1K X;  2ZJP W;  3CCS W;  3CC2 W;  1VQN W;  1YJN W;  1VQ9 W;  1VQ7 W;  5JVG W;  3G4S W;  1YJW W;  4IOA W;  1K9M X;  3CXC V;  4WFA W;  5JVH W;  3CCJ W;  1KC8 X;  1NJI X;  3CCE W;  1S72 W;  3I56 W;  3CCL W;  3CCR W;  1Q81 X;  1JJ2 V;  3G6E W;  1YIJ W;  3CME W;  1VQL W;  3CD6 W;  1VQO W;  1QVG V;  1KD1 X;  3CPW V;  4U67 W;  1YHQ W;  1VQ6 W;  2ZJR W;  1W2B V;  1YI2 W;  3CMA W;  3CCV W;  3OW2 V;  3J7Z Z;  3CC4 W;  3CC7 W;  1N8R X;  2QA4 W;  4WCE W; 
#chains in the Genus database with same CATH topology
 2QEX W;  1Q86 X;  1VQM W;  1DD4 A;  1M90 X;  3O1F B;  3PIO W;  5GAD a;  2ZJQ W;  3CCM W;  1VQK W;  2W9R A;  1DD3 A;  4CJN A;  3PIP W;  1VQP W;  4IOC W;  4DKI A;  3W7S A;  1Q7Y X;  5HL7 W;  1VQ5 W;  5DM7 W;  5CA3 A;  1QVF V;  1R6O C;  1K73 X;  4WF9 W;  3W7T A;  3W7X A;  1K8A X;  3CCQ W;  1YIT W;  4YKA A;  3ZFZ A;  5DM6 W;  3CF5 W;  2OTJ W;  1VQ8 W;  4YJX A;  2OTL W;  4YJM A;  1YJ9 W;  1MBV B;  1MWR A;  5GAH a;  1BXY A;  3G71 W;  4WFN W;  1VQ4 W;  1MBX C;  5GAE a;  4IO9 W;  3I55 W;  1Q82 X;  2WA9 A;  3D3I A;  3GQ1 A;  1RQV A;  3O1F A;  5GAG a;  3O2O A;  1RQS A;  3ZG0 A;  4UY8 Z;  4WFB W;  1MWS A;  1MWU A;  3CCU W;  1KQS V;  3G3P A;  3DLL W;  1M1K X;  2ZJP W;  3CCS W;  3CC2 W;  1VQN W;  1YJN W;  2WA8 A;  1VQ9 W;  3O2B A;  1MBU C;  1VQ7 W;  1RQU A;  3G19 A;  5JVG W;  3G4S W;  1YJW W;  4IOA W;  1K9M X;  3CXC V;  4WFA W;  5JVH W;  3CCJ W;  1KC8 X;  4C1N A;  1NJI X;  3W7U A;  3CCE W;  1R6Q C;  1S72 W;  5M19 A;  3W7W A;  3I56 W;  3CCL W;  3GW1 A;  3CCR W;  1Q81 X;  3G1B A;  1VQQ A;  1JJ2 V;  4CPK A;  3G6E W;  1YIJ W;  4BL2 A;  3CME W;  1VQL W;  3CD6 W;  3O2H A;  1VQO W;  1QVG V;  1KD1 X;  3CPW V;  1CTF A;  4U67 W;  1YHQ W;  5M1A A;  1LZW A;  1VQ6 W;  2ZJR W;  1W2B V;  3ZG5 A;  1MG9 A;  1YI2 W;  5M18 A;  3CMA W;  3CCV W;  3OW2 V;  3GQ0 A;  3DNJ A;  3J7Z Z;  3CC4 W;  3CC7 W;  1N8R X;  4BL3 A;  2QA4 W;  4WCE W;  5GW7 A;  1MWT A; 
#chains in the Genus database with same CATH homology
 2QEX W;  1Q86 X;  1VQM W;  1M90 X;  3PIO W;  5GAD a;  2ZJQ W;  3CCM W;  1VQK W;  3PIP W;  1VQP W;  4IOC W;  1Q7Y X;  5HL7 W;  1VQ5 W;  5DM7 W;  1QVF V;  1K73 X;  4WF9 W;  1K8A X;  3CCQ W;  1YIT W;  5DM6 W;  3CF5 W;  2OTJ W;  1VQ8 W;  2OTL W;  1YJ9 W;  5GAH a;  1BXY A;  3G71 W;  4WFN W;  1VQ4 W;  5GAE a;  4IO9 W;  3I55 W;  1Q82 X;  5GAG a;  4UY8 Z;  4WFB W;  3CCU W;  1KQS V;  3DLL W;  1M1K X;  2ZJP W;  3CCS W;  3CC2 W;  1VQN W;  1YJN W;  1VQ9 W;  1VQ7 W;  5JVG W;  3G4S W;  1YJW W;  4IOA W;  1K9M X;  3CXC V;  4WFA W;  5JVH W;  3CCJ W;  1KC8 X;  4C1N A;  1NJI X;  3CCE W;  1S72 W;  3I56 W;  3CCL W;  3CCR W;  1Q81 X;  1JJ2 V;  3G6E W;  1YIJ W;  3CME W;  1VQL W;  3CD6 W;  1VQO W;  1QVG V;  1KD1 X;  3CPW V;  4U67 W;  1YHQ W;  1VQ6 W;  2ZJR W;  1W2B V;  1YI2 W;  3CMA W;  3CCV W;  3OW2 V;  3J7Z Z;  3CC4 W;  3CC7 W;  1N8R X;  2QA4 W;  4WCE W;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
Application loaded.